A decade of QTL mapping for cyst nematode resistance in soybean

Crop Science

Volumn 44, Issue 4, 2004, Pages 1121-1131

  Concibido, Vergel C ^a   Diers, Brian W ^b   Arelli, Prakash R ^c  

^a MONSANTO COMPANY   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE MAX; GLYCINE SOJA; HETERODERA; HETERODERA GLYCINES;

EID: 3843063360     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2004.1121     Document Type: Review

References (68)

1. Anand, S.C. 1991. Sources of resistance to Heterodera glycines in soybean cultivars. In P.T. Colyer (ed.) Proc. Southern Soybean Disease Workers 18th Ann. Meet., Lexington, KY.
2. Anand, S.C. 1992. Registration of 'Hartwig' soybean. Crop Sci. 32:1069-1070.
3. Anand, S.C., and A.P. Rao-Arelli. 1989. Genetic analyses of soybean genotypes resistant to soybean cyst nematode race 5. Crop Sci. 29:1181-1184.
4. Anand, S.C., and K.M. Gallo. 1984. Identification of additional soybean germplasm with resistance to race 3 of the soybean cyst nematode. Plant Dis. 68:593-595.
5. Anand, S.C., K.M. Gallo, I.A. Baker, and E.E. Hartwig. 1988. Soybean plant introductions with resistance to races 4 or 5 of soybean cyst nematode. Crop Sci. 28:563-564.
6. Arelli, P.R., D.A. Sleper, P. Yue, and J.A. Wilcox. 2000. Soybean reaction to races 1 and 2 of Heterodera glycines. Crop Sci. 40:824-826.
7. Boutin, S., H. Ansari, V. Concibido, R. Denny, J. Orf, and N. Young. 1992. RFLP analysis of cyst nematode resistance in soybeans. Soybean Genet. Newsl. 19:123-127.
8. Bradley, E.B., and M. Duffy. 1982. The value of plant resistance to soybean cyst nematode: A case study of 'Forrest' soybean. Nat. Resource Economics Staff Report, USDA, Washington, DC.
9. Cai, D., M. Kleine, S. Kifle, H.J. Harloff, N.N. Sandal, K.A. Marcker, R.M. Klein-Lankhorst, E.M.J. Salentin, W. Lange, W.J. Stiekma, U. Wyss, F.M. Grundler, and C. Jung. 1997. Positional cloning of a gene for nematode resistance in sugar beet. Science 275:832-834.
10. Caldwell, B.E., C.A. Brim, and J.P. Ross. 1960. Inheritance of resistance of soybeans to the cyst nematode, Heterodera glycines. Agron. J. 52:635-636.
11. Chang, S.J.C., T.W. Doubler, V.Y. Kilo, J. Abu-Thredeih, R. Prabhu, V. Freire, R. Suttner, J. Klein, M.E. Schmidt, P.T. Gibson, and D.A. Lightfoot. 1997. Association of loci underlying field resistance to soybean sudden death syndrome (SDS) and cyst nematode (SCN) race 3. Crop Sci. 37:965-971.
12. Colgrove, A.L., G.S. Smith, J.A. Wrather, R.D. Heinz, and T.L. Niblack. 2002. Lack of predictable race shift in Heterodera glycines-infested field pots. Plant Dis. 86:1101-1108.
13. Concibido, V.C. 1995. Identification and characterization of soybean cyst nematode resistance genes using DNA markers. Ph.D. diss. (Diss. Abstr. Int. 56/10-B:5252). Univ. of Minnesota, St. Paul.
14. Concibido, V.C., R.L. Denny, S.R. Boutin, R. Hautea, J.H. Orf, and N.D. Young. 1994. DNA marker analysis of loci underlying resistance to soybean cyst nematode (Heterodera glycines Ichinohe). Crop Sci. 34:240-246.
15. Concibido, V.C., R. Denny, D. Lange, D. Danesh, J. Orf, and N. Young. 1995. The soybean cyst nematode resistance gene on linkage group G is common among sources of resistance. Soybean Genet. Newsl. 22:269-272.
16. Concibido, V.C., R. Denny, D. Lange, D. Danesh, J. Orf, and N. Young. 1997. Genome mapping on soybean cyst nematode resistance genes in 'Peking', PI90763, and PI88788 using DNA markers. Crop Sci. 37:258-264.
17. Concibido, V.C., R.L. Denny, D.A. Lange, J.H. Orf, and N.D. Young. 1996a. Targeted comparative genome analysis and qualitative mapping of a major partial resistance gene to soybean cyst nematode. Theor. Appl. Genet. 93:234-241.
18. Concibido, V.C., N.D. Young, D.A. Lange, R.L. Denny, and J.H. Orf. 1996b. RFLP mapping and marker-assisted selection of soybean cyst nematode resistance in PI 209332. Crop Sci. 36:1643-1650.
19. Cregan, P.B., T. Jarvik, A.L. Bush, R.C. Shoemaker, K.G. Lark, A.L. Kahler, T.T. VanToai, D.G. Lohnes, J. Chung, and J.E. Specht. 1999a. An integrated genetic linkage map of the soybean genome. Crop Sci. 39:1464-1490.
20. Cregan, P.B., J. Mudge, E.W. Fickus, D. Danesh, R. Denny, and N.D. Young. 1999b. Two simple sequence repeat markers to select for soybean cyst nematode resistance conditioned by the rhg1 locus. Theor. Appl. Genet. 99:811-818.
21. Diers, B.W., and P.R. Arelli. 1999. Management of parasitic nematodes of soybean through genetic resistance. p. 300-306. In H.E. Kauffman (ed.) Proc. World Soybean Res. Conf., 6th. Chicago, IL. 4-7 Aug 1999. Superior Printing, Champaign, IL.
22. Diers, B.W., A.P. Rao-Arelli, and T. Kisha. 1997a. Genetic mapping of soybean cyst nematode resistance genes from PI 88788. Soybean Genet. Newsl. 24:194-195.
23. Diers, B.W., H.T. Skorupska, A.P. Rao-Arelli, and S.R. Cianzio. 1997b. Genetic relationships among soybean plant introductions with resistance to soybean cyst nematode. Crop Sci. 37:1966-1972.
24. Dixon, M.S., D.A. Jones, J.S. Keddie, CM. Thomas, K. Harrison, and J.D.G. Jones. 1996. The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84:451-459.
25. Dong, K., K.R. Barker, and C.H. Opperman. 1997. Genetics of soybean-Heterodera glycines interactions. J. Nematol. 29:509-522.
26. Epps, J.M., and E.E. Hartwig. 1972. Reaction of soybean varieties and strains to race 4 of the soybean cyst nematode. (Abstr.). J. Nematol. 4:222.
27. Ferreira, A.R., K.R. Foutz, and P. Keim. 2000. Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map. J. Hered. 91:392-396.
28. Golden, A.M., J.M. Epps, R.D. Riggs, L.A. Duclos, J.A. Fox, and R.L. Bernard. 1970. Terminology and identity of intraspecific forms of the soybean cyst nematode (Heterodera glycines). Plant Dis. Rep. 54:544-546.
29. Hauge, B.M., M.L. Wang, J.D. Parsons, and L.D. Parnell. inventors; Monsanto Company, assignee. 2001. Nucleic acid molecules and other molecules associated with soybean cyst nematode resistance. U.S. Pat. App. Pub. No. 20030005491.
30. Heer, J.A., H.T. Knap, R. Mahalingam, E.R. Shipe, P.R. Arelli, and B.F. Matthews. 1998. Molecular markers for resistance to Heterodera glycines in advanced soybean germplasm. Mol. Breed. 4:359-367.
31. Hymowitz, T., and R.J. Singh. 1987. Taxonomy and speciation. p. 23-48. In J.R. Wilcox (ed.) Soybean: Improvement, production and uses. 2nd ed. Agron. Mongr. 16. ASA, CSSA, and SSSA, Madison, WI.
32. Keim, P., B.W. Diers, T.C. Olson, and R.C. Shoemaker. 1990. RFLP mapping in soybean: Association between marker loci and variation in quantitative traits. Genetics 126:735-742.
33. Keim, P., J.M. Schupp, S.E. Travis, K. Clayton, T. Zhu, L. Shi, A. Ferreira, and D.M. Webb. 1997. A high-density soybean genetic map based on AFLP markers. Crop Sci. 37:537-543.
34. Lightfoot, D., and K. Meksem. inventors. 2002. Isolated polynucleotides and polypeptides relating to loci underlying resistance to soybean cyst nematode and soybean sudden death syndrome and methods employing same. U.S. Pat. Application Publ. No. 2002144310.
35. Mahalingam, R., and H.T. Skorupska. 1995. DNA markers for resistance to Heterodera glycines race-3 in soybean cultivar 'Peking'. Breed. Sci. 45:435-443.
36. Maison, A.L., and L.F. Williams. 1965. Evidence of a fourth gene for resistance to the soybean cyst nematode. Crop Sci. 5:477.
37. Meksem, K., P. Pangiotis, D. Hyten, V. Njiti, D.A. Lightfoot, and P. Arelli. 2001. Forrest resistance to soybean cyst nematode is bigenic: Saturation mapping of the rhg1 and Rhg4 loci. Theor. Appl. Genet. 103:710-717.
38. Mudge, J., P.B. Cregan, J.P. Kenworthy, W.J. Kenworthy, J.H. Orf, and N.D. Young. 1997. Two microsatellite markers that flank the major soybean cyst nematode resistance locus. Crop Sci. 37:1611-1615.
39. Myers, G.O., and S.C. Anand. 1991. Inheritance of resistance and genetic relationships among soybean plant introductions to races of soybean cyst nematode. Euphytica 55:197-201.
40. Niblack, T.L., P.R. Arelli, G.R. Noel, C.H. Opperman, J. Orf, D.P. Schmitt, J.G. Shannon, and G.L. Tylka. 2002. A revised classification scheme for genetically diverse populations of Heterodera glycines. J. Nematol. 34:279-288.
41. Nickell, C.D., G.R. Noel, T.R. Cary, D.J. Thomas, and R.A. Leitz. 1999. Registration of 'Ina' soybean. Crop Sci. 39:1533.
42. Orf, J.H., and D.H. MacDonald. 1995. Registration of 'Faribault' soybean. Crop Sci. 35:1227.
43. Prabhu, R.R., V.N. Njiti, B. Bell Johnson, J.E. Johnson, M.E. Schmidt, J.H. Klein, and D.A. Lightfoot. 1999. Selecting soybean cultivars for dual resistance to soybean cyst nematode and sudden death syndrome using two DNA markers. Crop Sci. 39:982-987.
44. Qiu, B.X., P.R. Arelli, and D.A. Sleper. 1999. RFLP markers associated with soybean cyst nematode resistance and seed composition in a 'Peking' x 'Essex' population. Theor. Appl. Genet. 98:356-364.
45. Rao-Arelli, A.P. 1994. Inheritance of resistance to Heterodera glycines race 3 in soybean accessions. Plant Dis. 78:898-900.
46. Rao-Arelli, A.P., and S.C. Anand. 1988. Genetic relationships among soybean plant introductions for resistance to race 3 of soybean cyst nematode. Crop Sci. 28:650-652.
47. Rao-Arelli, A.P., S.C. Anand, and G.O. Myers. 1989. Partial dominance of susceptibility in soybean to soybean cyst nematode races 3, 4, and 5. Crop Sci. 29:1562-1564.
48. Rao-Arelli, A.P., S.C. Anand, and J.A. Wrather. 1992a. Soybean resistance to soybean cyst nematode race 3 is conditioned by an additional dominant gene. Crop Sci. 32:862-864.
49. Rao-Arelli, A.P., J.A. Wilcox, O. Myers, Jr., and P.T. Gibson. 1997. Soybean germplasm resistant to races 1 and 2 of Heterodera glycines. Crop Sci. 37:1367-1369.
50. Rao-Arelli, A.P., J.A. Wrather, and S.C. Anand. 1992b. Genetic diversity among isolates of Heterodera glycines and sources of resistance in soybeans. Plant Dis. 76:894-896.
51. Riggs, R.D., and D.P. Schmitt. 1987. Nematodes. p. 757-778. In J.R. Wilcox (ed.) Soybeans: Improvement, production, and uses. 2nd ed. Agron. Mongr. 16. ASA, CSSA, and SSSA, Madison, WI.
52. Ross, J.P., and C.A. Brim. 1957. Resistance of soybeans to the soybean cyst nematode as determined by a double-row method. Plant Dis. Rep. 41:923-924.
53. Schuster, I., R.V. Abdelnoor, S.R.R. Marin, V.P. Carvalho, R.A.S. Kiihl, J.F.V. Silva, C.S. Sediyama, E.G. Barros, and M.A. Moreira. 2001. Identification of a new major QTL associated with resistance to soybean cyst nematode (Heterodera glycines). Theor. Appl. Genet. 102:91-96.
54. Shoemaker, R.C., K. Polzin, J. Labate, J. Specht, E.C. Brummer, T. Olson, N. Young, V. Concibido, and J. Wilcox, J.P. Tamulonis, G. Kochert and H.R. Boerma. 1996. Genome duplication in soybean (Glycine subgenus soja) Genetics 144:329-338.
55. Shoemaker, R.C., and T.C. Olson. 1993. Molecular linkage map of soybean (Glycine max L. Merr.). p. 6.131-6-138. In S.J. O'Brien (ed.) Genetic maps: Locus maps of complex genomes. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
56. Skorupska, H.T., I.S. Choi, A.P. Rao-Arelli, and W.C. Bridges. 1994. Resistance to soybean cyst nematode and molecular polymorphism in various sources of 'Peking' soybean. Euphytica 75:63-70.
57. Vierling, R.A., J. Faghihi, V.R. Ferris, and J.M. Ferris. 1996a. Association of RFLP markers conferring broad-based resistance to the soybean cyst nematode (Heterodera glycines). Theor. Appl. Genet. 92:83-86.
58. Vierling, R.A., J. Faghihi, and V.R. Ferris. and J.M Ferris, inventors; Purdue Research Foundation, assignee. 1996b. Methods for conferring broad-based soybean cyst nematode resistance to a soybean line. U.S. Pat. No. 6,096,944. Date issued: 1 Aug. 2000.
59. Wang, D., P.R. Arelli, R.C. Shoemaker, and B.W. Diers. 2001. Loci underlying resistance to race 3 of soybean cyst nematode in Glycine soja plant introduction 468916. Theor. Appl. Genet. 103:561-566.
60. Webb, D.M. inventor; Pioneer Hi-Bred International, Inc., assignee. 2003. Quantitative trait loci associated with cyst nematode resistance and uses thereof. U.S. patent 6,538,175. Date issued 25 Mar. 2003.
61. Webb, D.M., B.M. Baltazar, A.P. Rao-Arelli, J. Schupp, K. Clayton, P. Keim, and W.D. Beavis. 1995. Genetic mapping of soybean cyst nematode race-3 resistance loci in soybean PI437.654. Theor. Appl. Genet. 91:574-581.
62. Weismann, J.M., B.F. Matthews, and T.E. Devine. 1992. Molecular markers located proximal to the soybean cyst nematode resistance gene, Rhg4. Theor. Appl. Genet. 85:136-138.
63. Wrather, J.A., T.R. Anderson, D.M. Arsyad, Y. Tan, L.D. Ploper, A. Porta-Puglia, H.H. Ram, and J.T. Yorinori. 2001. Soybean disease loss estimates for the top ten soybean-producing countries in 1998. Can. J. Plant Pathol. 23:115-121.
64. Young, L.D. 1990. Soybean germplasm evaluated for resistance to races 3, 5, and 14 of soybean cyst nematode. Crop Sci. 30:735-736.
65. Young, L.D., and T.C. Kilen. 1994. Genetic relationships among plant introductions for resistance to soybean cyst nematode race 5. Crop Sci. 34:936-939.
66. Yue, P., P.R. Arelli, and D.A. Sleper. 2001a. Molecular characterization of resistance to Heterodera glycines in soybean PI 438489B. Theor. Appl. Genet. 102-921-928.
67. Yue, P., D.A. Sleper, and P.R. Arelli. 2001b. Mapping resistance to multiple races of Heterodera glycines in soybean PI 89772. Crop Sci. 41:1589-1595.
68. Zaitsev, V.S., B.S. Naroditsky, and E.E. Khavkin. 2001. Homologs of the genes for receptor kinase-like proteins conferring plant resistance to pathogens. Comparative analysis of the homologs of the rice gene Xa21 in Triticeae Institute of Agricultural Biotechnology, 42 Timiryazevskaya ul., Moscow 127550, Russia. http://www.ncbi. nlm.nih.gov.