메뉴 건너뛰기




Volumn 74, Issue 2, 2008, Pages 516-525

Complete genomic sequence of bacteriophage φEcoM-GJ1, a novel phage that has myovirus morphology and a podovirus-like RNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

GENE ENCODING; PROTEINS; RNA;

EID: 38349133909     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00990-07     Document Type: Article
Times cited : (38)

References (49)
  • 2
    • 0036259862 scopus 로고    scopus 로고
    • Presentation of postweaning Escherichia coli diarrhea in southern Ontario, prevalence of hemolytic E. coli serogroups involved, and their antimicrobial resistance patterns
    • Amezcua, R., R. M. Friendship, C. E. Dewey, C. Gyles, and J. M. Fairbrother. 2002. Presentation of postweaning Escherichia coli diarrhea in southern Ontario, prevalence of hemolytic E. coli serogroups involved, and their antimicrobial resistance patterns. Can. J. Vet. Res. 66:73-78.
    • (2002) Can. J. Vet. Res , vol.66 , pp. 73-78
    • Amezcua, R.1    Friendship, R.M.2    Dewey, C.E.3    Gyles, C.4    Fairbrother, J.M.5
  • 3
    • 0037106445 scopus 로고    scopus 로고
    • Interaction of the ocr gene 0.3 protein of bacteriophage T7 with EcoKI restriction/modification enzyme
    • Atanasiu, C., T. J. Su, S. S. Sturrock, and D. T. Dryden. 2002. Interaction of the ocr gene 0.3 protein of bacteriophage T7 with EcoKI restriction/modification enzyme. Nucleic Acids Res. 30:3936-3944.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3936-3944
    • Atanasiu, C.1    Su, T.J.2    Sturrock, S.S.3    Dryden, D.T.4
  • 4
    • 34948860729 scopus 로고    scopus 로고
    • Causes for the intriguing presence of tRNAs in phages
    • Bailly-Bechet, M., M. Vergassola, and E. Rocha. 2007. Causes for the intriguing presence of tRNAs in phages. Genome Res. 17:1486-1495.
    • (2007) Genome Res , vol.17 , pp. 1486-1495
    • Bailly-Bechet, M.1    Vergassola, M.2    Rocha, E.3
  • 5
    • 0036468146 scopus 로고    scopus 로고
    • Intronless homing: Site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns
    • Belle, A., M. Landthaler, and D. A. Shub. 2002. Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns. Genes Dev. 16:351-362.
    • (2002) Genes Dev , vol.16 , pp. 351-362
    • Belle, A.1    Landthaler, M.2    Shub, D.A.3
  • 6
    • 0035107529 scopus 로고    scopus 로고
    • A novel group I intron-encoded endonuclease specific for the anticodon region of tRNA(fMet) genes
    • Bonocora, R. P., and D. A. Shub. 2001. A novel group I intron-encoded endonuclease specific for the anticodon region of tRNA(fMet) genes. Mol. Microbiol. 39:1299-1306.
    • (2001) Mol. Microbiol , vol.39 , pp. 1299-1306
    • Bonocora, R.P.1    Shub, D.A.2
  • 7
    • 20344382957 scopus 로고    scopus 로고
    • Here a virus, there a virus, everywhere the same virus?
    • Breitbart, M., and F. Rohwer. 2005. Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13:278-284.
    • (2005) Trends Microbiol , vol.13 , pp. 278-284
    • Breitbart, M.1    Rohwer, F.2
  • 8
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversion
    • Brüssow, H., C. Canchaya, and W. D. Hardt. 2004. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68:560-602.
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 560-602
    • Brüssow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 10
    • 38349120719 scopus 로고    scopus 로고
    • Determining DNA packaging strategy by analysis of the termini of the n chromosomes in tailed-bacteriophage virions
    • M. R. J. Clokie and A. M. Kropinski ed, in press. Humana Press, Totowa, NJ
    • Casjens, S. R., and E. B. Gilcrease. Determining DNA packaging strategy by analysis of the termini of the n chromosomes in tailed-bacteriophage virions. In M. R. J. Clokie and A. M. Kropinski (ed.), Bacteriophages: methods and protocols, in press. Humana Press, Totowa, NJ.
    • Bacteriophages: Methods and protocols
    • Casjens, S.R.1    Gilcrease, E.B.2
  • 11
    • 28544445595 scopus 로고    scopus 로고
    • Information theory based T7-like promoter models: Classification of bacteriophages and differential evolution of promoters and their polymerases
    • Chen, Z., and T. D. Schneider. 2005. Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases. Nucleic Acids Res. 33:6172-6187.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6172-6187
    • Chen, Z.1    Schneider, T.D.2
  • 12
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
    • Clauser, K. R., P. R. Baker, and A. L. Burlingame. 1999. Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 71:2871-2882.
    • (1999) Anal. Chem , vol.71 , pp. 2871-2882
    • Clauser, K.R.1    Baker, P.R.2    Burlingame, A.L.3
  • 13
    • 0020964297 scopus 로고
    • Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
    • Dunn, J. J., and F. W. Studier. 1983. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J. Mol. Biol. 166:477-535.
    • (1983) J. Mol. Biol , vol.166 , pp. 477-535
    • Dunn, J.J.1    Studier, F.W.2
  • 14
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • Eddy, S. R., and R. Durbin. 1994. RNA sequence analysis using covariance models. Nucleic Acids Res. 22:2079-2088.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 15
    • 0030598363 scopus 로고    scopus 로고
    • Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome
    • El-Mabrouk, N., and F. Lisacek. 1996. Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome. J. Mol. Biol. 264:46-55.
    • (1996) J. Mol. Biol , vol.264 , pp. 46-55
    • El-Mabrouk, N.1    Lisacek, F.2
  • 16
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. 1. Accuracy assessment
    • Ewing, B., L. Hillier, M. C. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using phred. 1. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 17
    • 26044455874 scopus 로고    scopus 로고
    • Escherichia coli in postweaning diarrhea in pigs: An update on bacterial types, pathogenesis, and prevention strategies
    • Fairbrother, J. M., E. Nadeau, and C. L. Gyles. 2005. Escherichia coli in postweaning diarrhea in pigs: an update on bacterial types, pathogenesis, and prevention strategies. Anim. Health Res. Rev. 6:17-39.
    • (2005) Anim. Health Res. Rev , vol.6 , pp. 17-39
    • Fairbrother, J.M.1    Nadeau, E.2    Gyles, C.L.3
  • 18
    • 0032577269 scopus 로고    scopus 로고
    • Genome structure of mycobacteriophage D29: Implications for phage evolution
    • Ford, M. E., G. J. Sardis, A. E. Belanger, R. W. Hendrix, and G. F. Hatfull. 1998. Genome structure of mycobacteriophage D29: implications for phage evolution. J. Mol. Biol. 279:143-164.
    • (1998) J. Mol. Biol , vol.279 , pp. 143-164
    • Ford, M.E.1    Sardis, G.J.2    Belanger, A.E.3    Hendrix, R.W.4    Hatfull, G.F.5
  • 19
    • 0037414474 scopus 로고    scopus 로고
    • Association between the porcine Escherichia coli F18 receptor genotype and phenotype and susceptibility to colonisation and postweaning diarrhoea caused by E. coli O138:F18
    • Frydendahl, K., J. T. Kare, A. J. Strodl, M. Fredholm, and G. Evans. 2003. Association between the porcine Escherichia coli F18 receptor genotype and phenotype and susceptibility to colonisation and postweaning diarrhoea caused by E. coli O138:F18. Vet. Microbiol. 93:39-51.
    • (2003) Vet. Microbiol , vol.93 , pp. 39-51
    • Frydendahl, K.1    Kare, J.T.2    Strodl, A.J.3    Fredholm, M.4    Evans, G.5
  • 20
    • 38349172074 scopus 로고    scopus 로고
    • The T1-like bacteriophages
    • R. L. Calendar ed, Oxford University Press, New York, NY
    • German, G. J., R. Misra, and A. M. Kropinski. 2006. The T1-like bacteriophages, p. 211-224. In R. L. Calendar (ed.), The bacteriophages. Oxford University Press, New York, NY.
    • (2006) The bacteriophages , pp. 211-224
    • German, G.J.1    Misra, R.2    Kropinski, A.M.3
  • 21
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 23
    • 33645302913 scopus 로고    scopus 로고
    • 1, lytic for Xanthomonas oryzae pv. oryzae, changes its host range by duplication and deletion of the small domain in the deduced tail fiber gene
    • 1, lytic for Xanthomonas oryzae pv. oryzae, changes its host range by duplication and deletion of the small domain in the deduced tail fiber gene. J. Gen. Plant Pathol. 72:111-118.
    • (2006) J. Gen. Plant Pathol , vol.72 , pp. 111-118
    • Inoue, Y.1    Matsuura, T.2    Ohara, T.3    Azegami, K.4
  • 24
    • 34547686403 scopus 로고    scopus 로고
    • Isolation and characterization of nine bacteriophages that lyse O149 enterotoxigenic Escherichia coli
    • Jamalludeen, N., R. P. Johnson, R. Friendship, A. M. Kropinski, E. Lingohr, and C. L. Gyles. 2007. Isolation and characterization of nine bacteriophages that lyse O149 enterotoxigenic Escherichia coli. Vet. Microbiol. 124:47-57.
    • (2007) Vet. Microbiol , vol.124 , pp. 47-57
    • Jamalludeen, N.1    Johnson, R.P.2    Friendship, R.3    Kropinski, A.M.4    Lingohr, E.5    Gyles, C.L.6
  • 27
    • 0036567507 scopus 로고    scopus 로고
    • Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort
    • Landthaler, M., U. Begley, N. C. Lau, and D. A. Shub. 2002. Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Res. 30:1935-1943.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1935-1943
    • Landthaler, M.1    Begley, U.2    Lau, N.C.3    Shub, D.A.4
  • 28
    • 0037901842 scopus 로고    scopus 로고
    • The nicking homing endonuclease 1-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille
    • Landthaler, M., and D. A. Shub. 2003. The nicking homing endonuclease 1-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille. Nucleic Acids Res. 31:3071-3077.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3071-3077
    • Landthaler, M.1    Shub, D.A.2
  • 30
    • 1842559901 scopus 로고    scopus 로고
    • PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes
    • Lavigne, R., W. D. Sun, and G. Volckaert. 2004. PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes. Bioinformatics 20:629-6135.
    • (2004) Bioinformatics , vol.20 , pp. 629-6135
    • Lavigne, R.1    Sun, W.D.2    Volckaert, G.3
  • 31
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 35
    • 0035043999 scopus 로고    scopus 로고
    • No syringes please, ejection of phage T7 DNA from the virion is enzyme driven
    • Molineux, I. J. 2001. No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol. Microbiol. 40:1-8.
    • (2001) Mol. Microbiol , vol.40 , pp. 1-8
    • Molineux, I.J.1
  • 36
    • 24044517514 scopus 로고    scopus 로고
    • Enterotoxigenic Escherichia coli in veterinary medicine
    • Nagy, B., and P. Z. Fekete. 2005. Enterotoxigenic Escherichia coli in veterinary medicine. Int. J. Med. Microbiol. 295:443-454.
    • (2005) Int. J. Med. Microbiol , vol.295 , pp. 443-454
    • Nagy, B.1    Fekete, P.Z.2
  • 37
    • 0342614926 scopus 로고    scopus 로고
    • Codon usage tabulated from the international DNA sequence databases: Status for the year 2000
    • Nakamura, Y., T. Gojobori, and T. Ikemura. 2000. Codon usage tabulated from the international DNA sequence databases: status for the year 2000. Nucleic Acids Res. 28:292.
    • (2000) Nucleic Acids Res , vol.28 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 38
    • 0344154624 scopus 로고    scopus 로고
    • Virulence genes of O149 enterotoxigenic Escherichia coli from outbreaks of postweaning diarrhea in pigs
    • Noamani, B. N., J. M. Fairbrother, and C. L. Gyles. 2003. Virulence genes of O149 enterotoxigenic Escherichia coli from outbreaks of postweaning diarrhea in pigs. Vet. Microbiol. 97:87-101.
    • (2003) Vet. Microbiol , vol.97 , pp. 87-101
    • Noamani, B.N.1    Fairbrother, J.M.2    Gyles, C.L.3
  • 39
    • 0032948726 scopus 로고    scopus 로고
    • Arg introns among α-purple bacteria: evidence for horizontal transmission and transposition of a group 1 intron. J. Bacteriol. 181:1049-1053.
    • Arg introns among α-purple bacteria: evidence for horizontal transmission and transposition of a group 1 intron. J. Bacteriol. 181:1049-1053.
  • 40
    • 0030690292 scopus 로고    scopus 로고
    • Origin and evolution of group I introns in cyanobacterial tRNA genes
    • Paquin, B., S. D. Kathe, S. A. Nierzwicki-Bauer, and D. A. Shub. 1997. Origin and evolution of group I introns in cyanobacterial tRNA genes. J. Bacteriol. 179:6798-6806.
    • (1997) J. Bacteriol , vol.179 , pp. 6798-6806
    • Paquin, B.1    Kathe, S.D.2    Nierzwicki-Bauer, S.A.3    Shub, D.A.4
  • 41
    • 1242296995 scopus 로고    scopus 로고
    • The genome and proteome of coliphage T1
    • Roberts, M. D., N. L. Martin, and A. M. Kropinski. 2004. The genome and proteome of coliphage T1. Virology 318:245-266.
    • (2004) Virology , vol.318 , pp. 245-266
    • Roberts, M.D.1    Martin, N.L.2    Kropinski, A.M.3
  • 43
    • 38349183583 scopus 로고    scopus 로고
    • Sayers, J. R. 2006. Bacteriophage T5, p. 268-276. In R. Calendar (ed.), The bacteriophages. Oxford University Press, New York, NY.
    • Sayers, J. R. 2006. Bacteriophage T5, p. 268-276. In R. Calendar (ed.), The bacteriophages. Oxford University Press, New York, NY.
  • 44
    • 0036239912 scopus 로고    scopus 로고
    • Bacteriophage SP6 is closely related to phages K1-5, K5, and K1E but encodes a tail protein very similar to that of the distantly related P22
    • Scholl, D., S. Adhya, and C. R. Merril. 2002. Bacteriophage SP6 is closely related to phages K1-5, K5, and K1E but encodes a tail protein very similar to that of the distantly related P22. J. Bacteriol. 184:2833- 2836.
    • (2002) J. Bacteriol , vol.184 , pp. 2833-2836
    • Scholl, D.1    Adhya, S.2    Merril, C.R.3
  • 46
    • 0020956015 scopus 로고
    • Effectiveness of phages in treating experimental Escherichia coli diarrhoea in calves, piglets and lambs
    • Smith, H. W., and M. B. Huggins. 1983. Effectiveness of phages in treating experimental Escherichia coli diarrhoea in calves, piglets and lambs. J. Gen. Microbiol. 129:2659-2675.
    • (1983) J. Gen. Microbiol , vol.129 , pp. 2659-2675
    • Smith, H.W.1    Huggins, M.B.2
  • 48
    • 0029879482 scopus 로고    scopus 로고
    • Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t
    • van Sinderen, D., H. Karsens, J. Kok, P. Terpstra, M. H. Ruiters, G. Venema, and A. Nauta. 1996. Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t. Mol. Microbiol. 19:1343-1355.
    • (1996) Mol. Microbiol , vol.19 , pp. 1343-1355
    • van Sinderen, D.1    Karsens, H.2    Kok, J.3    Terpstra, P.4    Ruiters, M.H.5    Venema, G.6    Nauta, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.