Catalytic activities of recA protein are dependent on the lattice length of the single-strand DNA ligand

Cell Cycle

Volumn 7, Issue 1, 2008, Pages 89-95

  Sussman, Raquel ^a   Sharma, Shashi K ^b   Kuzirian, Alan ^a  

^a MARINE BIOLOGICAL LABORATORY   (United States)

^b CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

Allostery; Protein DNA complex; SOS repair; Structure function

Indexed keywords

LIGAND; MONOMER; NUCLEOSIDE TRIPHOSPHATE; OLIGONUCLEOTIDE; PROTEINASE; RECA PROTEIN; SINGLE STRANDED DNA;

ALLOSTERISM; ARTICLE; CATALYSIS; DNA CONFORMATION; DNA PROTEIN COMPLEX; ENZYME ACTIVITY; PROTEIN DNA INTERACTION; PROTEIN FUNCTION; THERMODYNAMICS;

EID: 38349085873     PISSN: 15384101     EISSN: 15514005     Source Type: Journal    
DOI: 10.4161/cc.7.1.5109     Document Type: Article

References (43)

1. Little JW, Mount DW. The SOS regulatory system of Escherichia coli. Cell 1982; 29:11-22.
2. Walker GC. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev 1984; 48:60-93.
3. Witkin EM. RecA protein in the SOS response: milestones and mysteries. Biochimie 1991; 73:133-41.
4. McEntee K, Weinstock GM. The recA enzyme of Escherichia coli and recombination assays. In: Boyer PD, ed. The Enzymes, 14. New York: Academic Press, 1981; 455-70.
5. Howard-Flanders P, West SC, Stasiak A. Roll of recA protein spiral filaments in genetic recombination. Nature 1984; 309:215-9.
6. Cox M M, Lehman 1R. Enzymes of general recombination. Ann Rev Biochem 1987; 56:229-62.
7. Kowalczykowski SC, Dixon DA, Eggleston AK, Lauder SD, Rehrauer WM. Biochemistry of homologous recombination in Escherichia coli. Microbiol Rev 1994; 58:401-65.
8. Story RM, Weber IT Steitz TA. The structure of the E. coli recA protein monomer and polymer. Nature 1992; 355:318-25.
9. Story RM. Steitz TA. Structure of the recA protein-ADP complex. Nature1992; 355:374-6.
10. Craig NL Roberts JW. E. coli recA protein-directed cleavage of phage lambda repressor requires polynucleotide. Nature 1980; 283:26-30.
11. Cunningham R, Shibata T, DasGupta C, Radding CM. Single strands induce recA protein to unwind duplex DNA for homologous pairing. Nature 1979; 281:191-5.
12. Craig NL, Roberts JW. Function of nucleoside triphosphate and polynucleotide in Escherichia coli recA protein-directed cleavage of phage lambda repressor. J Biol Chem 1981; 256:8039-44.
13. McEntee K, Weinstock GM, Lehman IR. recA protein-catalyzed strand assimilation: stimulation by Escherichia coli single-stranded DNA-binding protein. Proc Natl Acad Sci 1980; 77:857-61.
14. Shibata T, DasGupta C, Cunningham RP, Williams JGK, Osber L, Radding CM. Homologous pairing in genetic recombination. The pairing reaction catalyzed by Escherichia coli recA protein. J Biol Chem 1981; 256:7565-72.
15. Resnick J, Sussman R. Escherichia coli single-strand DNA binding protein from wild type and lexC113 mutant affects in vitro proteolytic cleavage of phage lambda repressor. Proc Natl Acad Sci 1982; 79:2832-5.
16. West SC, Casuto E, Howard-Flanders P. Postreplication repair in E. coli: strand exchange reactions of gapped DNA by RecA protein. Mol Gen Genet 1982; 186:333-8.
17. Weinstock GM, McEntee K, Lehman IR. Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli. Proc Natl Acad Sci 1979; 76:126-30.
18. Bryant FR, Lehman IR. On the mechanism of renaturation of complementary DNA strands by the recA protein of Escherichia coli. Proc Natl Acad Sci 1985; 82;297-301.
19. Cohen SP, Resnick J, Sussman R. Interaction of single-strand binding protein and RecA protein at the single-stranded DNA site. J Mol Biol 1983; 167:901-9.
20. DiCapua E, Schnarr M, Ruigrok RW, Lindner P, Timmins PA. Complexes of RecA protein in solution. A study by small angle neutron scattering. J Mol Biol 1990; 214:557-70.
21. Menetski JP, Kowalczykowski SC. Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors. J Mol Biol 1985; 181:281-95.
22. Resnick J, Sussman R. Cobalt: an effector of E. coli recA protein activity. Nucleic Acids Res 1982; 10: 5239-53.
23. Little JW. Autodigestion of lexA and phage lambda repressors. Proc Natl Acad Sci 1984; 81:1375-9.
24. Riggs AD, Bourgeois S, Cohn M. The lac repressor-operator interaction. 3. Kinetic studies. J Mol Biol 1970; 53:401-17.
25. Phyzicky EM, Roberts JW. Induction of SOS functions: regulation of proteolytic activity of E. coli RecA protein by interaction with DNA and nucleoside triphosphate. Cell 1981; 25:259-67.
26. Craig NL, Roberts JW. Function of nucleoside triphosphate and polynucleotide in Escherichia coli recA protein-directed cleavage of phage lambda repressor. J Biol Chem 1981; 256:8039-44.
27. Konola JT, Nastri HG, Logan KM, Knight K L. Mutations at Pro67 in the RecA protein P-loop motif differentially modify coprotease function and separate coprotease from recombination activities. J Biol Chem 1995; 270:8411-9.
28. Hsieh P, Camerini-Otero CS, Camerini-Otero RD. The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA. Proc Natl Acad Sci 1992; 89:6492-6.
29. Weinstock EM, McEntee K, Lehman IR. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Steady state kinetic analysis of ATP hydrolysis. J Biol Chem 1981; 256:8845-9.
30. Record MT, Lohman TM, deHaseth PL. Ion effects on ligand-nucleic acid interactions. J Mol Biol 1976; 107:145-58.
31. Lohman TM, deHaseth PL, Record MT. Analysis of ion concentration effects of the kinetics of protein-nucleic acid interactions. Application to lac repressor-operator interactions. Biophys Chem 1978; 8:281-94.
32. Record MT, deHaseth PL, Lohman TM. Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme. Biochemistry 1977; 16:4791-6.
33. Morrical SW, Lee J, Cox MM. Continuous association of Escherichia coli single-stranded DNA binding protein with stable complexes of recA protein and single-stranded DNA. Biochemistry. 1986; 25:1482-94.
34. Muniyappa M, Williams K, Chase JW, Radding CM. Active nucleoprotein filaments of single-stranded binding protein and recA protein on single-stranded DNA have a regular repeat in structure. Nucleic Acids Res 1990; 18:3967-73.
35. Register JC, Griffith J. RecA protein filaments can juxtapose DNA ends: an activity that may reflect a function in DNA repair. Proc Natl Acad Sci 1986; 83:624-8.
36. Takahashi M, Kubista M, Norden B. Binding stoichiometry and structure of RecA-DNA complexes studied by flow linear dichroism and fluorescence spectroscopy. Evidence for multiple heterogeneous DNA co-ordination. J Mol Biol 1989; 205:137-47.
37. Lauder SD, Kowalczykowski SC. Asymetry in the recA protein-DNA filament. J. Biol. Chem. 1991; 266:5450-8.
38. DiCapua E, Engel A, Stasiak A, Koller T. Characterization of complexes between recA protein and duplex DNA by electron microscopy. J Mol Biol 1982; 157:87-103.
39. Egelman EH, Stasiak A. Structure of helical RecA-DNA complexes. II. Local conformational changes visualized in bundles of RecA-ATP gamma S filaments J Mol Biol; 1988; 200:329-49.
40. Egelman EH, Yu X. The location of DNA in RecA-DNA helical filaments. Science 1989; 245:404-6.
41. DiCapua E, Cuillel M, Hewat E, Schnarr M, Timmins PA, Ruigrock WH. Activation of recA protein. The open helix model for LexA cleavage. J Mol.Biol 1992; 226:707-19.
42. Yu X, Egelman EH. The LexA repressor binds within the deep helical groove of the activated RecA filament. J Mol Biol 1993; 231:29-40.
43. Kowalczykowski SC, Bear DG, von Hippel PH. Single-Stranded DNA Binding Proteins. In: Boyer P. D, ed. The Enzymes, vol.14. New York: Academic Press 1981; 374-444.