Sequencing and Reverse Transcription-Polymerase Chain Reaction (RT-PCR) Analysis of Four Hydrogenase Gene Clusters from an Obligately Autotrophic Hydrogen-Oxidizing Bacterium, Hydrogenobacter thermophilus TK-6

Journal of Bioscience and Bioengineering

Volumn 104, Issue 6, 2007, Pages 470-475

  Ueda, Yasufumi ^a   Yamamoto, Masahiro ^a   Urasaki, Takashi ^a   Arai, Hiroyuki ^a   Ishii, Masaharu ^a   Igarashi, Yasuo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

hydrogenase; Hydrogenobacter thermophilus; reductive TCA cycle

Indexed keywords

CARBON DIOXIDE; CLONING; GENES; HYDROGEN; TRANSCRIPTION;

GENE CLUSTERS; HYDROGENASE; HYDROGENOBACTER THERMOPHILUS; REDUCTIVE TCA CYCLE;

ENZYMES;

CARBON DIOXIDE; HYDROGEN; HYDROGENASE;

ARTICLE; AUTOTROPHY; BACTERIAL GROWTH; BACTERIAL STRAIN; CARBON DIOXIDE FIXATION; CHEMOLITHOAUTOTROPH; CITRIC ACID CYCLE; DENITRIFYING BACTERIUM; GENE CLUSTER; GENE EXPRESSION; GENE SEQUENCE; HYDROGENOBACTER THERMOPHILUS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; REDUCTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; THERMOPHILIC BACTERIUM;

AQUIFOLIACEAE; HYDROGEN; HYDROGENASE; MULTIGENE FAMILY; OXIDATION-REDUCTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); HYDROGENOBACTER THERMOPHILUS;

EID: 38149134386     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.104.470     Document Type: Article

References (24)

1. Kawasumi T., Igarashi Y., Kodama T., and Minoda Y. Isolation of strictly thermophilic and obligately autotrophic hydrogen bacteria. Agric. Biol. Chem. 44 (1980) 1985-1986
2. Kawasumi T., Igarashi Y., Kodama T., and Minoda Y. Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen oxidizing bacterium. Int. J. Syst. Bacteriol. 34 (1984) 5-10
3. Pitulle C., Yang Y., Marchiani M., Moore E.R., Siefert J.L., Aragno M., Jurtshuk Jr. P., and Fox G.E. Phylogenetic position of the genus Hydrogenobacter. Int. J. Syst. Bacteriol. 44 (1994) 620-626
4. 2 assimilation via the reductive tricarboxylic acid cycle in an obligately autotrophic, aerobic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus. Arch Microbiol. 141 (1985) 198-203
5. Cammack R., Frey M., and Robson R. Hydrogen as a fuel (2001), Taylor & Francis, London and New York
6. Deckert G., Warren P.V., Gaasterland T., Young W.G., Lenox A.L., Graham D.E., Overbeek R., Snead M.A., Keller M., Aujay M., Huber R., Feldman R.A., Short J.M., Olson G.J., and Swanson R.V. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 392 (1998) 353-358
7. Brugna-Guiral M., Tron P., Nitschke W., Stetter K.O., Burlat B., Guigliarelli B., Bruschi M., and Giudici-Orticoni M.T. [NiFe] hydrogenases from the hyperthermophilic bacterium Aquifex aeolicus: properties, function, and phylogenetics. Extremophiles 7 (2003) 145-157
8. Guiral M., Aubert C., and Giudici-Orticoni M.T. Hydrogen metabolism in the hyperthermophilic bacterium Aquifex aeolicus. Biochem. Soc. Trans. 33 (2005) 22-24
9. Guiral M., Tron P., Aubert C., Gloter A., Iobbi-Nivol C., and Giudici-Orticoni M.T. A membrane-bound multienzyme, hydrogen-oxidizing, and sulfur-reducing complex from the hyperthermophilic bacterium Aquifex aeolicus. J. Biol. Chem. 280 (2005) 42004-42015
10. Ishii M., Takishita S., Iwasaki T., Peerapornpisal Y., Yoshino J., Kodama T., and Igarashi Y. Purification and characterization of membrane-bound hydrogenase from Hydrogenobacter thermophilus TK-6, an obligately autotrophic, thermophilic, hydrogen-oxidizing bacterium. Biosci. Biotechnol. Biochem. 64 (2000) 492-502
11. Shiba H., Kawasumi T., Igarashi Y., Kodama T., and Minoda Y. The deficient carbohydrate metabolic pathways and the incomplete tricarboxylic acid cycle in an obligately autotrophic hydrogen-oxidizing bacterium. Agric. Biol. Chem. 46 (1982) 2341-2345
12. Suzuki M., Cui Z.J., Ishii M., and Igarashi Y. Nitrate respiratory metabolism in an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6. Arch. Microbiol. 175 (2001) 75-78
13. Sambrook J., Fritsch E.F., and Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. (1999), Cold Spring Harbor Laboratory, New York
14. Ikeda T., Yamamoto M., Arai H., Ohmori D., Ishii M., and Igarashi Y. Two tandemly arranged Ferredoxin genes in the Hydrogenobacter thermophilus genome: comparative characterization of the recombinant [4Fe-4S] ferredoxins. Biosci. Biotechnol. Biochem. 69 (2005) 1172-1177
15. Vignais P.M., Billoud B., and Meyer J. Classification and phylogeny of hydrogenases. FEMS Microbiol. Rev. 25 (2001) 455-501
16. Wu L.F., and Mandrand M.A. Microbial hydrogenases: primary structure, classification, signatures and phylogeny. FEMS Microbiol. Rev. 10 (1993) 243-269
17. Wu L.F., Chanal A., and Rodrigue A. Membrane targeting and translocation of bacterial hydrogenases. Arch. Microbiol. 173 (2000) 319-324
18. Bernhard M., Benelli B., Hochkoeppler A., Zannoni D., and Friedrich B. Functional and structural role of the cytochrome b subunit of the membrane-bound hydrogenase complex of Alcaligenes eutrophus H16. Eur. J. Biochem. 248 (1997) 179-186
19. Volbeda A., Charon M.H., Piras C., Hatchikian E.C., Frey M., and Fontecilla-Camps J.C. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature 373 (1995) 580-587
20. Tamagnini P., Axelsson R., Lindberg P., Oxelfelt F., Wunschiers R., and Lindblad P. Hydrogenases and hydrogen metabolism of cyanobacteria. Microbiol. Mol. Biol. Rev. 66 (2002) 1-20
21. Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17 (2001) 1244-1245
22. Jeanmougin F., Thompson J.D., Gouy M., Higgins D.G., and Gibson T.J. Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23 (1998) 403-405
23. 2 sensing in Alcaligenes eutrophus. Proc. Natl. Acad. Sci. USA 95 (1998) 12474-12479
24. Ferber D.M., Moy B., and Maier R.J. Bradhyrhizobium japonicum hydrogen-ubiquinone oxidoreductase activity: quinone specificity, inhibition by quinone analogs, and evidence for separate sites of electron acceptor reactivity. Biochim. Biophys. Acta 1229 (1995) 334-346