Microbial Community that Catalyzes Partial Nitrification at Low Oxygen Atmosphere as Revealed by 16S rRNA and amoA Genes

Journal of Bioscience and Bioengineering

Volumn 104, Issue 6, 2007, Pages 525-528

  Chuang, Hui Ping ^a   Imachi, Hiroyuki ^b   Tandukar, Madan ^c   Kawakami, Shuji ^a   Harada, Hideki ^c   Ohashi, Akiyoshi ^d  

^a NAGAOKA UNIVERSITY OF TECHNOLOGY   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c TOHOKU UNIVERSITY   (Japan)

^d HIROSHIMA UNIVERSITY   (Japan)

Author keywords

16S rRNA; ammonium oxidizing bacteria; amoA gene; fluorescence; in situ hybridization; partial nitrification

Indexed keywords

CATALYST ACTIVITY; CLONING; FLUORESCENCE; GENES; NITRIFICATION; OXYGEN;

16S RRNA; AMMONIUM-OXIDIZING BACTERIA; IN SITU HYBRIDIZATION; PARTIAL NITRIFICATION;

BACTERIA;

AMMONIA; OXYGEN; RNA 16S;

AMOA GENE; ARTICLE; ATMOSPHERE; BACTEROIDES; CATALYSIS; ECOLOGICAL NICHE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE; MICROBIAL COMMUNITY; MICROORGANISM; MOLECULAR CLONING; NITRIFICATION; NITROSOMONAS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLUM; UNINDEXED SEQUENCE;

BACTEROIDETES; CATALYSIS; NITRITES; NITROSOMONAS; OXYGEN; RNA, RIBOSOMAL, 16S;

BACTEROIDETES; NITROSOMONAS;

EID: 38149070129     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.104.525     Document Type: Article

References (16)

1. Schmidt I., Sliekers O., Schmid M., Bock E., Fuerst J., Kuenen J.G., Jetten M.S.M., and Strous M. New concepts of microbial treatment processes for the nitrogen removal in wastewater. FEMS Microbiol. Rev. 27 (2003) 481-492
2. Bernet N., Dangjong N., Delgenes J.P., and Moletta R. Nitrification at low oxygen concentration in biofilm reactor. J. Environ. Eng. 127 (2001) 266-271
3. Chuang H.P., Ohashi A., Imachi H., Tandukar M., and Harada H. Effective partial nitrification to nitrite by down-flow hanging sponge reactor under limited oxygen condition. Water Res. 41 (2007) 295-302
4. Imachi H., Sekiguchi Y., Kamagata Y., Loy A., Qiu Y.L., Hugenholtz P., Kimura N., Wagner M., Ohashi A., and Harada H. Non-sulfate-reducing, syntrophic bacteria affiliated with Desulfotomaculum cluster I are widely distributed in methanogenic environments. Appl. Environ. Microbiol. 72 (2006) 2080-2091
5. Hatamoto M., Imachi H., Ohashi A., and Harada H. Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludge. Appl. Environ. Microbiol. 73 (2007) 1332-1340
6. Rottauwe J.H., Witzel K.P., and Liesack W. The ammonia monooxygenase structure gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63 (1997) 4704-4712
7. Francis C.A., Roberts K.J., Beman J.M., Santoro A.E., and Oakley B.B. Ubiquity and diversity of ammonia-oxidizing Archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. USA 102 (2005) 14683-14688
8. Yamada T., Sekiguchi Y., Imachi H., Kamagata Y., Ohashi A., and Harada H. Diversity, localization, and physiological properties of filamentous microbes belonging to Chloroflexi subphylum I in mesophilic and thermophilic sludge granules. Appl. Environ. Microbiol. 71 (2005) 7493-7503
9. Mobarry B., Wagner M., Urbain V., Rittmann B., and Stahl D.A. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol. 62 (1996) 2156-2162
10. Wagner M., Gath G., Koops H.P., Flood J., and Anamm R. In situ analysis of nitrifying bacteria in sewage treatment plants. Water Sci. Technol. 34 (1996) 237-244
11. Kubota K., Ohashi A., Imachi H., and Harada H. Visualization of mcr mRNA in a methanogen by fluorescence in situ hybridization with an oligonucleotide probe and two-pass tyramide signal amplification (Two-pass TSA-FISH). J. Microbiol. Methods 66 (2006) 521-528
12. Yamagata A., Kato J., Hirota R., Kiroda A., Ikeda T., Takiguchi N., and Ohtake H. Isolation and characterization of two cryptic plasmids in the ammonia-oxidizing bacterium Nitrosomonas sp. strain ENI-11. J. Bacteriol. 181 (1999) 3375-3381
13. Kuai L., and Verstraete W. Ammonium removal by the oxygen-limited autotrophic nitrification-denitrification system. Appl. Environ. Microbiol. 64 (1998) 4500-4506
14. Wrage N., Velthof G.L., van Beusichem M.L., and Oenema O. Role of nitrifier denitrification in the production of nitrous oxide. Soil Biol. Biochem. 33 (2001) 1723-1732
15. Van Schie P.M., and Young L.Y. Isolation and characterization of phenol-degrading denitrifying bacteria. Appl. Environ. Microbiol. 64 (1998) 2432-2438
16. Teira E., Reinthaler T., Pernthaler A., Pernthaler J., and Herndl G. Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl. Environ. Microbiol. 70 (2004) 4411-4412