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Volumn 4695 LNBI, Issue , 2007, Pages 80-95

Stochastic simulation of biological systems with dynamical compartment structure

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; DYNAMICAL SYSTEMS; SEMANTICS; STOCHASTIC MODELS;

EID: 38049174546     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-75140-3_6     Document Type: Conference Paper
Times cited : (14)

References (22)
  • 1
    • 0035235039 scopus 로고    scopus 로고
    • Representation and simulation of biochemical processes using the pi-calculus process algebra
    • Regev, A., Silverman, W., Shapiro, E.Y.: Representation and simulation of biochemical processes using the pi-calculus process algebra. In: Pacific Symposium on Biocomputing, pp. 459-470 (2001)
    • (2001) Pacific Symposium on Biocomputing , pp. 459-470
    • Regev, A.1    Silverman, W.2    Shapiro, E.Y.3
  • 2
    • 0035888407 scopus 로고    scopus 로고
    • Application of a stochastic name-passing calculus to representation and simulation of molecular processes
    • Priami, C., Regev, A., Shapiro, E.Y., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf. Process. Lett. 80(1), 25-31 (2001)
    • (2001) Inf. Process. Lett , vol.80 , Issue.1 , pp. 25-31
    • Priami, C.1    Regev, A.2    Shapiro, E.Y.3    Silverman, W.4
  • 4
    • 38049167675 scopus 로고    scopus 로고
    • A correct abstract machine for the stochastic pi-calculus
    • Phillips, A., Cardelli, L.: A correct abstract machine for the stochastic pi-calculus. In: Bioconcur'04, ENTCS (2004)
    • (2004) Bioconcur'04, ENTCS
    • Phillips, A.1    Cardelli, L.2
  • 5
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81(25), 2340-2361 (1977)
    • (1977) J. Phys. Chem , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 6
    • 26444592298 scopus 로고    scopus 로고
    • Cardelli, L.: Brane calculi. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), 3082, pp. 257-278. Springer, Heidelberg (2005) [22]
    • Cardelli, L.: Brane calculi. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol. 3082, pp. 257-278. Springer, Heidelberg (2005) [22]
  • 7
    • 26444448026 scopus 로고    scopus 로고
    • Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), 3082, pp. 20-33. Springer, Heidelberg (2005) [22]
    • Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol. 3082, pp. 20-33. Springer, Heidelberg (2005) [22]
  • 8
    • 38049126843 scopus 로고    scopus 로고
    • Stochastic approaches in P systems for simulating biological systems
    • Gutiérrez-Naranjo, M.A, Paun, G, Riscos-Núñez, A, Romero-Campero, F.J, eds, January 30, February 3
    • Cazzaniga, P., Pescini, D., Romero-Campero, F.J., Besozzi, D., Mauri, G.: Stochastic approaches in P systems for simulating biological systems. In: Gutiérrez-Naranjo, M.A., Paun, G., Riscos-Núñez, A., Romero-Campero, F.J. (eds.) Fourth Brainstorming Week on Membrane Computing, Sevilla, Fénix Editora, January 30 - February 3, 2006, vol. I, pp. 145-164 (2006)
    • (2006) Fourth Brainstorming Week on Membrane Computing, Sevilla, Fénix Editora , vol.1 , pp. 145-164
    • Cazzaniga, P.1    Pescini, D.2    Romero-Campero, F.J.3    Besozzi, D.4    Mauri, G.5
  • 10
    • 44049113210 scopus 로고
    • A calculus of mobile processes, i
    • Milner, R., Parrow, J., Walker, D.: A calculus of mobile processes, i. Inf. Comput. 100(1), 1-40 (1992)
    • (1992) Inf. Comput , vol.100 , Issue.1 , pp. 1-40
    • Milner, R.1    Parrow, J.2    Walker, D.3
  • 11
    • 44049114041 scopus 로고
    • A calculus of mobile processes, ii
    • Milner, R., Parrow, J., Walker, D.: A calculus of mobile processes, ii. Inf. Comput. 100(1), 41-77 (1992)
    • (1992) Inf. Comput , vol.100 , Issue.1 , pp. 41-77
    • Milner, R.1    Parrow, J.2    Walker, D.3
  • 13
    • 4544292270 scopus 로고    scopus 로고
    • On the expressive power of polyadic synchronisation in pi-calculus
    • Carbone, M., Maffeis, S.: On the expressive power of polyadic synchronisation in pi-calculus. Nord. J. Comput. 10(2), 70-98 (2003)
    • (2003) Nord. J. Comput , vol.10 , Issue.2 , pp. 70-98
    • Carbone, M.1    Maffeis, S.2
  • 14
    • 0011091058 scopus 로고    scopus 로고
    • Priority in process algebra
    • Bergstra, J, Ponse, A, Smolka, S, eds, Elsevier Science Publishers, Amsterdam
    • Cleaveland, R., Lüttgen, G., Natarajan, V.: Priority in process algebra. In: Bergstra, J., Ponse, A., Smolka, S. (eds.) Handbook of Process Algebra, pp. 711-765. Elsevier Science Publishers, Amsterdam (2001)
    • (2001) Handbook of Process Algebra , pp. 711-765
    • Cleaveland, R.1    Lüttgen, G.2    Natarajan, V.3
  • 17
    • 33751065165 scopus 로고    scopus 로고
    • A time-dependent extension of gillespie algorithm for biochemical stochastic π-calculus
    • New York, NY, USA, pp, ACM Press, New York
    • Lecca, P.: A time-dependent extension of gillespie algorithm for biochemical stochastic π-calculus. In: SAC '06: Proceedings of the 2006 ACM symposium on Applied computing, New York, NY, USA, pp. 137-144. ACM Press, New York (2006)
    • (2006) SAC '06: Proceedings of the 2006 ACM symposium on Applied computing , pp. 137-144
    • Lecca, P.1
  • 18
    • 20844455677 scopus 로고    scopus 로고
    • Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases
    • Elf, J., Ehrenberg, M.: Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases. Systems Biology 1(2), 230-236 (2004)
    • (2004) Systems Biology , vol.1 , Issue.2 , pp. 230-236
    • Elf, J.1    Ehrenberg, M.2
  • 20
    • 84876559742 scopus 로고    scopus 로고
    • Cazzaniga, P., Pescini, D., Besozzi, D., Mauri, G.: Tau leaping stochastic simulation method in p systems. In: Hoogeboom, H.J., Pǎun, G., Rozenberg, G., Salomaa, A. (eds.) WMC 2006. LNCS, 4361, pp. 298-313. Springer, Heidelberg (2006)
    • Cazzaniga, P., Pescini, D., Besozzi, D., Mauri, G.: Tau leaping stochastic simulation method in p systems. In: Hoogeboom, H.J., Pǎun, G., Rozenberg, G., Salomaa, A. (eds.) WMC 2006. LNCS, vol. 4361, pp. 298-313. Springer, Heidelberg (2006)
  • 21
    • 31544465969 scopus 로고    scopus 로고
    • Efficient step size selection for the tauleaping simulation method
    • Cao, Y., Gillespie, D.T., Petzold, L.R.: Efficient step size selection for the tauleaping simulation method. Journal of Chemical Physics 124(4) (2006)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4
    • Cao, Y.1    Gillespie, D.T.2    Petzold, L.R.3
  • 22
    • 38049142305 scopus 로고    scopus 로고
    • Danos, V., Schachter, V. (eds.): CMSB 2004. LNCS (LNBI), 3082, pp. 26-28. Springer, Heidelberg (2005)
    • Danos, V., Schachter, V. (eds.): CMSB 2004. LNCS (LNBI), vol. 3082, pp. 26-28. Springer, Heidelberg (2005)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.