Mass spectrometry based proteomic analysis of human stem cells: A brief review

Experimental and Molecular Medicine

Volumn 39, Issue 6, 2007, Pages 690-695

  Choi, Moon Young ^a   Yoo, Jin An ^a   So, Hyun Kim ^a   Si, Hun Roh ^a   Hyun, Kyung Ju ^a   Soon, Sun Hong ^b   Jeong, Hill Park ^a   Kyoung, Jin Cho ^c   Dal, Woong Choi ^c   Sung, Won Kwon ^a  

^a Seoul National University   (South Korea)

^b Inha University School of Medicine   (South Korea)

^c Korea University   (South Korea)

Author keywords

Adipocytes; Electrophoresis, gel, two dimensional; Embryonic stem cells; Human neuronal stem cells; Mass spectrometry; Mesenchymal stem cells; Proteomics

Indexed keywords

BIOLOGICAL MARKER;

CELL DIFFERENTIATION; CELL DIVISION; CELL REGENERATION; CELL RENEWAL; CELL TYPE; CONTROLLED STUDY; EMBRYONIC STEM CELL; HUMAN; HUMAN CELL; MASS SPECTROMETRY; MESENCHYMAL STEM CELL; MOLECULAR BIOLOGY; MOLECULAR GENETICS; NEURAL STEM CELL; PLURIPOTENT STEM CELL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; SHORT SURVEY; STEM CELL; TECHNIQUE; TWO DIMENSIONAL ELECTROPHORESIS;

EID: 38049169164     PISSN: 12263613     EISSN: 20926413     Source Type: Journal    
DOI: 10.1038/emm.2007.75     Document Type: Short Survey

References (46)

1. Aebersold R, Cravatt BF. Proteomics - advances, applications and the challenges that remain. Trends Biotechnol 2002;20:S1-2
2. Amos TA, Gordon MY. Sources of human hematopoietic stem cells for transplantation. Cell Transplant 1995;4:547-69
3. Baharvand H, Ashtiani SK, Taee A, Massumi M, Valojerdi MR, Yazdi PE, Moradi SZ, Farrokhi A. Generation of new human embryonic stem cell lines with diploid and triploid karyotypes. Dev Growth Differ 2006a;48:117-28
4. Baharvand H, Hajheidari M, Ashtiani SK, Salekdeh GH. Proteomic signature of human embryonic stem cells. Proteomics 2006b;6:3544-49
5. Bottcher T, Mix E, Koczan D, Bauer P, Pahnke J, Peters S, Weinelt S, Knoblich R, Strauss U, Cattaneo E, Thiesen HJ, Rolfs A. Gene expression profiling of ciliary neurotrophic factor-overexpressing rat striatal progenitor cells (ST14A) indicates improved stress response during the early stage of differentiation. J Neurosci Res 2003;73:42-53
6. Camp HS, Ren D, Leff T. Adipogenesis and fat-cell function in obesity and diabetes. Trends Mol Med 2002;8:442-7
7. Choudhary J, Grant SG. Proteomics in postgenomic neuroscience: the end of the beginning. Nat Neurosci 2004;7:440-5
8. Chung JW, Kim GY, Mun YC, Ahn JY, Seong CM, Kim JH. Leukotriene B4 pathway regulates the fate of the hematopoietic stem cells. Exp Mol Med 2005;37:45-50
9. Crowley-Weber CL, Payne CM, Gleason-Guzman M, Watts GS. Development and molecular characterization of HCT-116 cell lines resistant to the tumor promoter and multiple stress-inducer, deoxycholate. Carcinogenesis 2002;23:2063-80
10. Elliott ST, Crider DG, Garnham CP, Boheler KR, Van Eyk JE. Two-dimensional gel electrophoresis database of murine R1 embryonic stem cells. Proteomics 2004;4:3813-32
11. Evans CA, Tonge R, Blinco D, Pierce A, Shaw J, Lu Y, Hamzah HG, Gray A, Downes CP, Gaskell SJ, Spooncer E, Whetton AD. Comparative proteomics of primitive hematopoietic cell populations reveals differences in expression of proteins regulating motility. Blood 2004;103:3751-9
12. Feldmann RE Jr, Bieback K, Maurer MH, Kalenka A, Bürgers HF, Gross B, Hunzinger C, Klüter H, Kuschinsky W, Eichler H. Stem cell proteomes: a profile of human mesenchymal stem cells derived from umbilical cord blood. Electrophoresis 2005;26:2749-58
13. Gurok U, Steinhoff C, Lipkowitz B, Ropers HH, Scharff C, Nuber UA. Gene expression changes in the course of neural progenitor cell differentiation. J Neurosci 2004;24:5982-02
14. Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 1999;17:994-9
15. Hayman MW, Przyborski SA. Proteomic identification of biomarkers expressed by human pluripotent stem cells. Biochem Biophys Res Commun 2004;316:918-23
16. Hoffrogge R, Mikkat S, Scharf C, Beyer S, Christoph H, Pahnke J, Mix E, Berth M, Uhrmacher A, Zubrzycki IZ, Miljan E, Völker U, Rolfs A. 2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReNcell VM). Proteomics 2006;6:1833-47
17. Hood L. Systems biology: integrating technology, biology, and computation. Mech Ageing Dev 2003;124:9-16
18. Husi H, Grant SG. Proteomics of the nervous system. Trends Neurosci 2001;24:259-66
19. Kim SI, Vöshol H, van Oostrum J, Hastings TG. Neuroproteomics: expression profiling of the brain's proteomes in health and disease. Neurochem Res 2004;29:1317-31
20. Kwak DH, Yu K, Kim SM, Lee DH, Kim SM, Jung JU, Seo JW, Kim N, Lee S, Jung KY, You HK, Kim HA, Choo YK. Dynamic changes of gangliosides expression during the differentiation of embryonic and mesenchymal stem cells into neural cells. Exp Mol Med 2006;38:668-76
21. Lee HK, Lee BH, Park SA, Kim CW. The proteomic analysis of an adipocyte differentiated from human mesenchymal stem cells using two-dimensional gel electrophoresis. Proteomics 2006;6:1223-9
22. Lee YH, Han H, Chang SB, Lee SW. Isotope-coded N-terminal sulfonation of peptides allows quantitative proteomic analysis with increased de novo peptide sequencing capability. Rapid Commun Mass Spectrom 2004;18:3019-27
23. Levchenko A. Proteomics takes stem cell analyses to another level. Nat Biotechnol 2005;23:828-30
24. Lubec G, Krapfenbauer K, Fountoulakis M. Proteomics in brain research: potentials and limitations. Prog Neuro-biol 2003;69:193-211
25. Ma L, Sun B, Hood L, Tian Q. Molecular profiling of stem cells. Clinica Chimica Acta 2007;378:24-32
26. Maurer MH, Feldmann RE Jr, Futterer CD, Kuschinsky W. The proteome of neural stem cells from adult rat hippocampus. Proteome Sci 2003;1:1-4
27. Miyachi K, Fritzler MJ, Tan EM. Autoantibody to a nuclear antigen in proliferating cells. J Immunol 2005;121:2228-34
28. Mueller SM, Glowacki J. Age-related decline in the osteogenic potential of human bone marrow cells cultured in three-dimensional collagen sponges. J Cell Biochem 2001;82:583-90
29. Nagano K, Taoka M, Yamauchi Y, Itagaki C, Shinkawa T, Nunomura K, Okamura N, Takahashi N, Izumi T, Isobe T. Large-scale identification of proteins expressed in mouse embryonic stem cells. Proteomics 2005;5:1346-61
30. Nuttall ME, Gimble JM. Is there a therapeutic opportunity to either prevent or treat osteopenic disorders by inhibiting marrow adipogenesis? Bone 2000;27:177-84
31. Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 2002;1:376-86
32. Pahnke J, Mix E, Knoblich R, Müller J, Zschiesche M, Schubert B, Koczan D, Bauer P, Böttcher T, Thiesen HJ, Lazarov L, Wree A, Rolfs A. Overexpression of glial cell line-derived neurotrophic factor induces genes regulating migration and differentiation of neuronal progenitor cells. Exp Cell Res 2004;297:484-94
33. Pazman C, Castelli JC, Wen X, Somogyi R. Large-scale identification of differentially expressed genes during neurogenesis. Neuroreport 2000;11:719-24
34. Pearce A, Svendsen CN. Characterisation of stem cell expression using two-dimensional electrophoresis. Electrophoresis 1999;20:969-70
35. Prosperi MT, Ferbus D, Rouillard D, Goubin G. The pag gene product, a physiological inhibitor of c-abl tyrosine kinase, is overexpressed in cells entering S phase and by contact with agents inducing oxidative stress. FEBS Lett 1998;423:39-44
36. Rohlff C. Proteomics in molecular medicine: applications in central nervous systems disorders. Electrophoresis 2000;21:1227-34
37. Rohlff C. Proteomics in neuropsychiatric disorders. Int J Neuropsychopharmacol 2001;4:93-102
38. Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004;3:1154-69
39. Sekiya I, Larson BL, Vuoristo JT, Cui JG, Prockop DJ. Adipogenic differentiation of human adult stem cells from bone marrow stroma (MSCs). J Bone Miner Res 2004;19:256-64
40. Seshi B. An integrated approach to mapping the proteome of the human bone marrow stromal cell. Proteomics 2006;6:5169-82
41. Shapland C, Hsuan JJ, Totty NF, Lawson D. Purification and properties of transgelin: a transformation and shape change sensitive actin-gelling protein. J Cell Biol 1993;121:1065-73
42. Stenderup K, Justesen J, Clausen C, Kassem M. Aging is associated with decreased maximal life span and accelerated senescence of bone marrow stromal cells. Bone 2003;33:919-26
43. Stewart Il, Thomson T, Figeys D. 18O labeling: a tool for proteomics. Rapid Commun Mass Spectrom 2001;15:2456-65
44. Takasaki Y, Fishwild D, Tan EM. Characterization of proliferating cell nuclear antigen recognized by autoantibodies in lupus sera. J Exp Med 1984;159:981-92
45. Taylor CM, Marta CB, Claycomb RJ, Han DK, Rasband MN, Coetzee T, Pfeiffer SE. Proteomic mapping provides powerful insights into functional myelin biology. Proc Natl Acad Sci USA 2004;101:4643-8
46. Wang D, Park JS, Chu JS, Krakowski A, Luo K, Chen DJ, Li S. Proteomic profiling of bone marrow mesenchymal stem cells upon transforming growth factor beta1 stimulation. J Biol Chem 2004;279:43725-34