Pathways of pyrimidine salvage in Pseudomonas and former Pseudomonas: Detection of recycling enzymes using high-performance liquid chromatography

Current Microbiology

Volumn 56, Issue 2, 2008, Pages 162-167

  Beck, Debrah A ^a   O'Donovan, Gerard A ^a  

^a UNIVERSITY OF NORTH TEXAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE; BACTERIAL ENZYME; CYTIDINE; CYTIDINE DEAMINASE; CYTOSINE; CYTOSINE DEAMINASE; NUCLEOSIDASE; PURINE; PYRIMIDINE; PYRIMIDINE NUCLEOSIDE; RIBOSE; UNCLASSIFIED DRUG; URACIL; URACIL PHOSPHORIBOSYLTRANSFERASE; URIDINE; URIDINE HYDROLASE; URIDINE KINASE; URIDINE PHOSPHORYLASE; WATER;

ARTICLE; BREVUNDIMONAS DIMINUTA; BURKHOLDERIA CEPACIA; COMAMONAS TESTOSTERONI; CONTROLLED STUDY; ENZYME ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS INDIGOFERA; PSEUDOMONAS MENDOCINA; PSEUDOMONAS PSEUDOALCALIGENES; PSEUDOMONAS PUTIDA; PSEUDOMONAS STUTZERI; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SHEWANELLA PUTREFACIENS; STENOTROPHOMONAS MALTOPHILIA;

BIOSYNTHETIC PATHWAYS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CYTIDINE DEAMINASE; CYTOSINE DEAMINASE; N-GLYCOSYL HYDROLASES; PSEUDOMONAS; PYRIMIDINES; URIDINE PHOSPHORYLASE;

ESCHERICHIA COLI; PSEUDOMONAS;

EID: 38049110040     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-007-9050-3     Document Type: Article

References (39)

1. Auling G, Moss B (1984) Metabolism of pyrimidine bases and nucleosides in the corynebacteria, Brevibacterium ammoniagenes and Micrococcus luteus. J Bacteriol 158:733-736
2. Beck DA (1995) Pyrimidine salvage enzymes in microorganisms: labyrinths of enzymatic diversity. PhD thesis, University of North Texas, Denton, TX
3. Beck DA, Jordan BG, O'Donovan GA (1996) HPLC analysis of the pyrimidine salvage enzymes, uridine hydrolase and uridine phosphorylase, in enterics. In: Abstracts K-218, American Society for Microbiology, 96th General Meeting, p 573
4. Brichta DM, Azad KN, Ralli P, O'Donovan GA (2004) Pseudomonas aeruginosa dihydroorotases: a tale of three pyrCs. Arch Microbiol 182:7-17
5. Chaney SG, Boyer PD (1972) Incorporation of water oxygens into intracellular nucleotides and RNA II predominantly hydrolytic RNA turnover in Escherichia coli. J Mol Biol 64:581-591
6. Chu C-P, West TP (1990) Pyrimidine ribonucleoside catabolism in Pseudomonas fluorescens biotype A. Antonie van Leeuwenhoek 57:253-257
7. Cudny H, Deutscher MP (1980) Apparent involvement of ribonuclease D in the 3′ processing of tRNA precursors. Proc Natl Acad Sci USA 77:837-841
8. Deutscher MP, Reuven NB (1991) Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 88:3277-3280
9. Deutscher MP, Marchall GT, Cudny H (1988) RNase PH: An Escherichia coli phosphate-dependent nuclease distinct from polynucleotide phosphorylase. Proc Natl Acad Sci USA 85:4710-4714
10. Donovan WP, Kushner SR (1986) Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc Natl Acad Sci USA 83:120-124
11. Duffy JJ, Chaney SG, Boyer PD (1972) Incorporation of water oxygens into intracellular nucleotides and RNA. I. Predominantly non-hydrolytic RNA turnover in Bacillus subtilis. J Mol Biol 64:565-579
12. Dutta PK, Shanley MS, O'Donovan GA (1990) Assay of cytosine and cytidine deaminases by means of reversed-phase high performance liquid chromatography. J Chromatogr 512:395-401
13. Fields CJ (2002) Comparative biochemistry and genetic analysis of nucleoside hydrolase in Escherichia coli, Pseudomonas aeruginosa and Pseudomonas fluorescens. PhD thesis, University of North Texas, Denton, TX
14. Kim S, West TP (1991) Pyrimidine catabolism in Pseudomonas aeruginosa. FEMS Microbiol Lett 77:175-179
15. Lee Y-S (1991) Pyrimidine metabolism in bacteria: physiological properties of nucleoside hydrolase and uridine kinase. PhD thesis, University of North Texas, Denton, TX
16. Miller JH (1992) Experiments in microbial genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, p 432
17. Neuhard J (1983) Utilization of preformed pyrimidine bases and nucleosides. In: Munch-Petersen A (ed) Metabolism of nucleotides, nucleosides and nucleobases in microorganisms. Academic Press, New York, pp 95-148
18. Neuhard J, Nygaard P (1987) Purines and pyrimidines. In: Neidhardt FC (ed), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, pp 445-473
19. Nygaard P (1993) Purine and pyrimidine salvage pathways. In: Sonenshein AL, Hoch JA, Losick R (eds) Bacillus subtilis and other Gram positive bacteria. American Society for Microbiology, Washington, p 359-378
20. O'Donovan GA, Shanley MS (1995) Pyrimidine metabolism in Pseudomonas. Paths Pyrimidines Int Newslett 3:49-59
21. Ornston LN, Stanier RY (1966) The conversion of catechol and protocatechuate to β-ketoadipate by Pseudomonas putida. J Biol Chem 16:3776-3786
22. Palleroni NJ, Kunisawa R, Contopoulou R, Doudoroff M (1973) Nucleic acid homologies in the genus Pseudomonas. Int J Syst Bacteriol 23:333-339
23. Palleroni NJ, Holmes B (1981) Pseudomonas cepacia sp nov, nom rev. Int J Syst Bacteriol 31:479-481
24. Petersen C, Moller LB (2001) The RihA, RihB and RihC ribonucleoside hydrolases of Escherichia coli. J Biol Chem 276:884-894
25. Sakai T, Omata S (1976) Distribution of enzymes related to cytidine degradation in bacteria. Agric Biol Chem 40:1893-1895
26. Schaechter M (2007) Biology of infectious agents. In: Engleberg NC, Di Rita V, Dermody TS (eds) Schaechter's mechanisms of microbial disease, 3rd ed. Lippincott, Williams and Wilkins, Philadelphia
27. Stanier RY, Palleroni NJ, Doudoroff M (1966) The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43:159-271
28. Tritz GJ (1987) NAD Biosynthesis and recycling. In: Neidhardt FC (ed) Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology American Society for Microbiology, Washington, pp 557-563
29. Vogels GD, van der Drift C (1976) Degradation of purines and pyrimidines by microorganisms. Bacterial Rev 40:403-468
30. West TP (1988) Metabolism of pyrimidine bases and nucleosides by Pseudomonas fluorescens biotype F. Microbios 56:27-36
31. West TP (1992) Pyrimidine base and ribonucleoside catabolic enzyme activities of the Pseudomonas diminuta group. FEMS Microbiol Lett 99:305-310
32. West TP (1996) Degradation of pyrimidine ribonucleosides by Pseudomonas aeruginosa Antonie van Leeuwenhoek 69:331-335
33. West TP (1997) Reductive catabolism of uracil and thymine by Burkholderia cepacia. Arch Microbiol 168:237-239
34. West TP (2001) Pyrimidine base catabolism in Pseudomonas putida biotype B. Antonie van Leeuwenhoek 80:163-167
35. West TP, Chu C-P (1986) Utilization of pyrimidine and pyrimidine analogues by fluorescent pseudomonads. Microbios 47:149-157
36. West TP, Traut TW, Shanley MS, O'Donovan GA (1985) A Salmonella typhimurium defective in uracil catabolism and β-alanine synthesis. J Gen Microbiol 131:1083-1090
37. Xu G, West TP (1992) Reductive catabolism of pyrimidine bases by Pseudomonas stutzeri. J Gen Microbiol 138:2459-2463
38. Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T, Arakawa M (1992) Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb nov. Microbiol Immunol 36:1251-1275
39. Yamamoto S, Kasai H, Arnold D, Jackson R W, Vivian A, Harayama S (2000) Phylogeny of the genus Pseudomonas: intragenic structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146:2385-2394