-
1
-
-
0032918736
-
The protein mutant database
-
Kawabata T, Ota M, Nishikawa K, The protein mutant database, Nucleic Acids Res 27(1):355-357, 1999.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.1
, pp. 355-357
-
-
Kawabata, T.1
Ota, M.2
Nishikawa, K.3
-
2
-
-
33344468683
-
-
Ananiadou S, McNaught J eds, Artech House, London
-
Ananiadou S, McNaught J (eds.), Text Mining for Biology and Biomedicine, Artech House, London, 2006.
-
(2006)
Text Mining for Biology and Biomedicine
-
-
-
3
-
-
17244380380
-
A survey of current work in biomedical text mining
-
Cohen AM, Hersh WR, A survey of current work in biomedical text mining, Brief Bioinform 6:57-71, 2005.
-
(2005)
Brief Bioinform
, vol.6
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
4
-
-
15744374330
-
Facts from text - Is text mining ready to deliver?
-
Rebholz-Schuhmann D, Kirsch H, Couto F, Facts from text - Is text mining ready to deliver?, PLoS Biol 3:188-191, 2005.
-
(2005)
PLoS Biol
, vol.3
, pp. 188-191
-
-
Rebholz-Schuhmann, D.1
Kirsch, H.2
Couto, F.3
-
5
-
-
27744487007
-
Text mining and ontologies in biomedicine: Making sense of raw text
-
Spasic I, Ananiadou S, McNaught J, Kumar A, Text mining and ontologies in biomedicine: Making sense of raw text, Brief Bioinform 6 239-251, 2005.
-
(2005)
Brief Bioinform
, vol.6
, pp. 239-251
-
-
Spasic, I.1
Ananiadou, S.2
McNaught, J.3
Kumar, A.4
-
6
-
-
33344478239
-
Evaluation of text mining in biology
-
Baker CJO, Cheung KH eds, New York, pp
-
Hirschman L, Blaschke C, Evaluation of text mining in biology, in Baker CJO, Cheung KH (eds.), Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, Springer Science+ Business Media, New York, pp. 213-246, 2006.
-
(2006)
Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, Springer Science+ Business Media
, pp. 213-246
-
-
Hirschman, L.1
Blaschke, C.2
-
7
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
Hirschman L, Yeh A, Blaschke C, Valencia A, Overview of BioCreAtIvE: Critical assessment of information extraction for biology, BMC Bioinformatics 6(Suppl 1), 2005.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
Valencia, A.4
-
8
-
-
33751072002
-
Abbreviations in biomedical text
-
Ananiadou S, McNaught J, eds, Artech House, London, pp
-
Chang J, Schütze H, Abbreviations in biomedical text, Ananiadou S, McNaught J, (eds.), Text Mining for Biology and Biomedicine, Artech House, London, pp. 99-120, 2006.
-
(2006)
Text Mining for Biology and Biomedicine
, pp. 99-120
-
-
Chang, J.1
Schütze, H.2
-
9
-
-
1242264326
-
Automatic extraction of mutations from Medline and cross-validation with OMIM
-
Rebholz-Schuhmann D, Marcel S, Albert S, Tolle R, Casari G, Kirsch H, Automatic extraction of mutations from Medline and cross-validation with OMIM, Nucleic Acids Res 32(1):135-142, 2001.
-
(2001)
Nucleic Acids Res
, vol.32
, Issue.1
, pp. 135-142
-
-
Rebholz-Schuhmann, D.1
Marcel, S.2
Albert, S.3
Tolle, R.4
Casari, G.5
Kirsch, H.6
-
10
-
-
34547879631
-
Mutation-Finder: A high-performance system for extracting point mutation mentions from text
-
Caporaso JG, Baumgartner WA Jr, Randolph DA, Cohen KB, Hunter L, Mutation-Finder: A high-performance system for extracting point mutation mentions from text, Bioinformatics 23(14):1862-1865, 2007.
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1862-1865
-
-
Caporaso, J.G.1
Baumgartner Jr, W.A.2
Randolph, D.A.3
Cohen, K.B.4
Hunter, L.5
-
11
-
-
13444273448
-
-
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckman B, Ferro S, Gasteiger E, Huang II, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Reelaschi N, Yeh LSL, The Universal Protein Resource (UtiiProt), Nucleic Acids Res 33(Database issue):D154-D159, 2005.
-
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckman B, Ferro S, Gasteiger E, Huang II, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Reelaschi N, Yeh LSL, The Universal Protein Resource (UtiiProt), Nucleic Acids Res 33(Database issue):D154-D159, 2005.
-
-
-
-
12
-
-
35348933128
-
The taxonomy project
-
McEntyre J, Ostell J (eds, National Library of Medicine US, National Center for Biotechnology Information, Bethesda, MD, pp
-
Federhen S, The taxonomy project, in McEntyre J, Ostell J (eds.), The NCBI Handbook, National Library of Medicine (US), National Center for Biotechnology Information, Bethesda, MD, pp. 4-1-4-34, 2003.
-
(2003)
The NCBI Handbook
-
-
Federhen, S.1
-
13
-
-
38049073398
-
Levels of natural language processing for text mining
-
Ananiadou S, McNaught J eds, Artech House, London, pp
-
Hahn U, Wermter J, Levels of natural language processing for text mining, in Ananiadou S, McNaught J (eds.), Text Mining for Biology and Biomedicine, Artech House, London, pp. 13-41, 2006.
-
(2006)
Text Mining for Biology and Biomedicine
, pp. 13-41
-
-
Hahn, U.1
Wermter, J.2
-
14
-
-
0242606438
-
A shallow parser based on closed-class words to capture relations in biomedical text
-
Leroy G, Chen H, Martinez JD, A shallow parser based on closed-class words to capture relations in biomedical text, J Biomed Inform 36:145-158, 2003.
-
(2003)
J Biomed Inform
, vol.36
, pp. 145-158
-
-
Leroy, G.1
Chen, H.2
Martinez, J.D.3
-
15
-
-
13244267011
-
PASBio: Predicate-argument structures for event extraction in molecular biology
-
Wattarujeekrit T, Shah PK, Collier N, PASBio: Predicate-argument structures for event extraction in molecular biology, BMC Bioinformatics 5:155, 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 155
-
-
Wattarujeekrit, T.1
Shah, P.K.2
Collier, N.3
-
16
-
-
15944404318
-
Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts
-
Leroy C, Chen H, Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts, J Am Soc Inf Syst Technol (JASIST) 56(5):457-468, 2005.
-
(2005)
J Am Soc Inf Syst Technol (JASIST)
, vol.56
, Issue.5
, pp. 457-468
-
-
Leroy, C.1
Chen, H.2
-
17
-
-
84920060600
-
Ontology design for biomedical text mining
-
Baker CJO, Cheung KH eds, New York, pp
-
Witte R, Kappler T, Baker CJO, Ontology design for biomedical text mining, in Baker CJO, Cheung KH (eds.), Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, Springer Science+Business Media, New York, pp. 281-313, 2007.
-
(2007)
Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, Springer Science+Business Media
, pp. 281-313
-
-
Witte, R.1
Kappler, T.2
Baker, C.J.O.3
-
18
-
-
33644857112
-
A naphora resolution for relating protein names to proteome database entries
-
Harabagiu S, Farwell D eds, Barcelona, Spain, pp
-
Kim JJ, Park JC, BioAR: A naphora resolution for relating protein names to proteome database entries, in Harabagiu S, Farwell D (eds.), ACL 2004: Workshop on Reference Resolution and its Applications, Barcelona, Spain, pp. 79-86, 2004.
-
(2004)
ACL 2004: Workshop on Reference Resolution and its Applications
, pp. 79-86
-
-
Kim, J.J.1
Park, J.C.2
Bio, A.R.3
-
19
-
-
35349006936
-
Enhanced semantic access to the protein engineering literature using ontologies populated by text mining
-
Witte R, Kappler T, Baker CJO, Enhanced semantic access to the protein engineering literature using ontologies populated by text mining, Int J Bioinform Res Appl 3(3):389-413, 2007.
-
(2007)
Int J Bioinform Res Appl
, vol.3
, Issue.3
, pp. 389-413
-
-
Witte, R.1
Kappler, T.2
Baker, C.J.O.3
-
20
-
-
1542400018
-
Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors
-
Horn F. Lau AL, Cohen FE, Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors, Bioinformatics 20(4):557-568, 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 557-568
-
-
Horn, F.1
Lau, A.L.2
Cohen, F.E.3
-
21
-
-
25144510918
-
Combining biological databases and text mining to support new bioinformatics applications
-
10th International Conference on Applications of Natural Language to Information Systems NLDB, Springer, Berlin, pp, June 15-17
-
Witte R, Baker CJO, Combining biological databases and text mining to support new bioinformatics applications, in 10th International Conference on Applications of Natural Language to Information Systems (NLDB), Lecture Notes in Computer Science, Vol. 3513, Springer, Berlin, pp. 310-321, June 15-17, 2005.
-
(2005)
Lecture Notes in Computer Science
, vol.3513
, pp. 310-321
-
-
Witte, R.1
Baker, C.J.O.2
-
22
-
-
0345863907
-
BRENDA, the enzyme database: Updates and major new developents
-
Database issue:D431-D433
-
Schomburg I, Chang A, Ebeling C, Gremse M, Heldt C, Huhn G, Schomburg D, BRENDA, the enzyme database: Updates and major new developents, Nucleic Acids Res 32(Database issue):D431-D433, 2004.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Schomburg, I.1
Chang, A.2
Ebeling, C.3
Gremse, M.4
Heldt, C.5
Huhn, G.6
Schomburg, D.7
-
23
-
-
33746675631
-
Integration and curation of reaction kinetics data
-
Proceedings of the 3rd International Workshop on Data integration in the Life Sciences 2006 DILS'06, Springer, Hinxton, UK, pp
-
Wittig U, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Anstein S, Saric J, Rojas I, SABIO-RK: Integration and curation of reaction kinetics data, in Proceedings of the 3rd International Workshop on Data integration in the Life Sciences 2006 (DILS'06), Lecture Notes in Bioinformatics, No. 4075, Springer, Hinxton, UK, pp. 94-103, 2007.
-
(2007)
Lecture Notes in Bioinformatics
, vol.4075
, pp. 94-103
-
-
Wittig, U.1
Golebiewski, M.2
Kania, R.3
Krebs, O.4
Mir, S.5
Weidemann, A.6
Anstein, S.7
Saric, J.8
Rojas, I.9
SABIO-RK10
-
24
-
-
35648948373
-
Knowledge discovery for biology with Taverna
-
Baker CJO, Cheung KH eds, New York, pp
-
Goble C, Wolstencroft K, Goderis A, Hull D, Zhao J, Alper P, Lord P, Wroe C, Bethajjame K, Turi D, Stevens R, Oinn T, De Roure D, Knowledge discovery for biology with Taverna, in Baker CJO, Cheung KH (eds.), Semantic Web: Revolutionizing Knomledge Discovery in the Life Sciences Springer Science+Business Media, New York, pp. 355-395, 2007.
-
(2007)
Semantic Web: Revolutionizing Knomledge Discovery in the Life Sciences Springer Science+Business Media
, pp. 355-395
-
-
Goble, C.1
Wolstencroft, K.2
Goderis, A.3
Hull, D.4
Zhao, J.5
Alper, P.6
Lord, P.7
Wroe, C.8
Bethajjame, K.9
Turi, D.10
Stevens, R.11
Oinn, T.12
De Roure, D.13
-
25
-
-
8444253793
-
Anaphora resolution in biomedical literature
-
Alicante, Spain
-
Castaño J, Zhang J, Pustejovsky J, Anaphora resolution in biomedical literature, International Symposium on Reference Resolution, Alicante, Spain, 2002.
-
(2002)
International Symposium on Reference Resolution
-
-
Castaño, J.1
Zhang, J.2
Pustejovsky, J.3
-
27
-
-
39049184445
-
Bootstrapping the recognition and anaphoric linking of namcd entities in Drosophila articles
-
Vlachos A, Gasperin C, Lewin I, Briscoe T, Bootstrapping the recognition and anaphoric linking of namcd entities in Drosophila articles, Pac Symp Biocomput: 100-111, 2006.
-
(2006)
Pac Symp Biocomput
, vol.100-111
-
-
Vlachos, A.1
Gasperin, C.2
Lewin, I.3
Briscoe, T.4
-
29
-
-
0005540823
-
-
Addison-Wesley Longman, Boston, MA
-
Baeza-Yates R, Ribeiro-Neto B, Modern Information Retrieval, Addison-Wesley Longman, Boston, MA, 1999.
-
(1999)
Modern Information Retrieval
-
-
Baeza-Yates, R.1
Ribeiro-Neto, B.2
-
30
-
-
0003612818
-
-
MIT Press, Cambridge, MA
-
Manning CD, Schütze H, Foundations of Statistical Natural Language Processing, MIT Press, Cambridge, MA, 1999.
-
(1999)
Foundations of Statistical Natural Language Processing
-
-
Manning, C.D.1
Schütze, H.2
-
31
-
-
26944501715
-
ROUGE: A package for automatic evaluation of summaries
-
Barcelona, Spain, July 25-26
-
Lin CY, ROUGE: A package for automatic evaluation of summaries, in Proceedings of Workshop or, Text Summarization Branches Out (WAS 2004) Barcelona, Spain, July 25-26, 2004. http://www.isi.edu/~cyl/ ROUGE/
-
(2004)
Proceedings of Workshop or, Text Summarization Branches Out (WAS 2004)
-
-
Lin, C.Y.1
-
32
-
-
38049051945
-
2005 using Basic Elements
-
Hovy E, Lin C, Zhou L, Evaluating DUC 2005 using Basic Elements, Proceedings of the HLT/EMNLP WorkShop on Text Summarization, DUC 2005 Vancouver, Canada, October 9-40, 2005.
-
(2005)
Proceedings of the HLT/EMNLP WorkShop on Text Summarization, DUC 2005 Vancouver, Canada, October 9-40
-
-
Hovy, E.1
Lin, C.2
Zhou, L.3
Evaluating, D.U.C.4
-
33
-
-
85013202438
-
Evaluating content selection in summarization: The pyramid method
-
Nenkova A, Passonneau RJ, Evaluating content selection in summarization: The pyramid method, Proc HLT/NAACL, pp. 145-152, 2004.
-
(2004)
Proc HLT/NAACL
, pp. 145-152
-
-
Nenkova, A.1
Passonneau, R.J.2
-
34
-
-
85086719044
-
A model-theoretic coreference scoring scheme
-
Vilain M, Burger J, Aberdeen J, Connolly D, Hirschman L, A model-theoretic coreference scoring scheme, in MUC6 '95: Proceedings of the 6th, Conference on Message Understanding, pp. 45-52, 1995.
-
(1995)
MUC6 '95: Proceedings of the 6th, Conference on Message Understanding
, pp. 45-52
-
-
Vilain, M.1
Burger, J.2
Aberdeen, J.3
Connolly, D.4
Hirschman, L.5
-
35
-
-
80053254849
-
On coreference resolution performance Dietrics
-
Vancouver, Canada, pp, October
-
Luo X, On coreference resolution performance Dietrics, in Proceedings of Human Language Technology Conference and Conferencee on Empirical Methods in Natural Language Processing, Vancouver, Canada, pp. 25-32, October 2005.
-
(2005)
Proceedings of Human Language Technology Conference and Conferencee on Empirical Methods in Natural Language Processing
, pp. 25-32
-
-
Luo, X.1
|