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Volumn 105, Issue 5, 2008, Pages 188-193

Efficient algorithms for finding interleaving relationship between sequences

Author keywords

Bioinformatics; Design of algorithms; Dynamic programming; Longest common subsequence; Merged sequence

Indexed keywords

BIOINFORMATICS; DYNAMIC PROGRAMMING; GENES; PROBLEM SOLVING;

EID: 37849053920     PISSN: 00200190     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ipl.2007.08.028     Document Type: Article
Times cited : (22)

References (20)
  • 1
    • 0023247786 scopus 로고
    • Geometric applications of a matrix-searching algorithm
    • Aggarwal A., Klawe M.M., Moran S., Shor P., and Wilber R. Geometric applications of a matrix-searching algorithm. Algorithmica 2 1 (1987) 195-208
    • (1987) Algorithmica , vol.2 , Issue.1 , pp. 195-208
    • Aggarwal, A.1    Klawe, M.M.2    Moran, S.3    Shor, P.4    Wilber, R.5
  • 2
    • 0036488707 scopus 로고    scopus 로고
    • Sparse dynamic programming for longest common subsequence from fragments
    • Baker B.S., and Giancarlo R. Sparse dynamic programming for longest common subsequence from fragments. Journal of Algorithms 42 2 (2002) 231-254
    • (2002) Journal of Algorithms , vol.42 , Issue.2 , pp. 231-254
    • Baker, B.S.1    Giancarlo, R.2
  • 6
    • 0016518550 scopus 로고
    • A linear space algorithm for computing maximal common subsequence
    • Hirschberg D.S. A linear space algorithm for computing maximal common subsequence. Communications of the ACM 18 6 (1975) 341-343
    • (1975) Communications of the ACM , vol.18 , Issue.6 , pp. 341-343
    • Hirschberg, D.S.1
  • 9
    • 7244259101 scopus 로고    scopus 로고
    • Genome duplication in the teleost fish tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    • Jaillon O., et al. Genome duplication in the teleost fish tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431 7011 (2004) 946-957
    • (2004) Nature , vol.431 , Issue.7011 , pp. 946-957
    • Jaillon, O.1
  • 10
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast saccharomyces cerevisiae
    • Kellis M., Birren B.W., and Lander E.S. Proof and evolutionary analysis of ancient genome duplication in the yeast saccharomyces cerevisiae. Nature 428 6983 (2004) 617-624
    • (2004) Nature , vol.428 , Issue.6983 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 11
    • 35048833282 scopus 로고    scopus 로고
    • Two algorithms for lcs consecutive suffix alignment
    • Combinatorial Pattern Matching, Springer, Berlin, Heidelberg
    • Landau G.M., Myers E., and Ziv-Ukelson M. Two algorithms for lcs consecutive suffix alignment. Combinatorial Pattern Matching. Lecture Notes in Computer Science vol. 3109 (2004), Springer, Berlin, Heidelberg 173-193
    • (2004) Lecture Notes in Computer Science , vol.3109 , pp. 173-193
    • Landau, G.M.1    Myers, E.2    Ziv-Ukelson, M.3
  • 13
    • 0012526495 scopus 로고    scopus 로고
    • On the common substring alignment problem
    • Landau G.M., and Ziv-Ukelson M. On the common substring alignment problem. Journal of Algorithms 41 2 (2001) 338-354
    • (2001) Journal of Algorithms , vol.41 , Issue.2 , pp. 338-354
    • Landau, G.M.1    Ziv-Ukelson, M.2
  • 14
    • 84976657294 scopus 로고
    • The complexity of some problems on subsequences and supersequences
    • Maier D. The complexity of some problems on subsequences and supersequences. Journal of the ACM 25 2 (1978) 322-336
    • (1978) Journal of the ACM , vol.25 , Issue.2 , pp. 322-336
    • Maier, D.1
  • 16
    • 37849030540 scopus 로고    scopus 로고
    • C.-L. Peng, An approach for solving the constrained longest common subsequence problem, Master Thesis, Department of Computer Science and Engineering, National Sun Yat-sen University, Taiwan, July 2003
  • 17
    • 0001596047 scopus 로고    scopus 로고
    • All highest scoring paths in weighted grid graphs and their application to finding all approximate repeats in strings
    • Schmidt J.P. All highest scoring paths in weighted grid graphs and their application to finding all approximate repeats in strings. SIAM Journal on Computing 27 4 (1998) 972-992
    • (1998) SIAM Journal on Computing , vol.27 , Issue.4 , pp. 972-992
    • Schmidt, J.P.1
  • 18
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T.F., and Waterman M.S. Identification of common molecular subsequences. Journal of Molecular Biology 147 1 (1981) 195-197
    • (1981) Journal of Molecular Biology , vol.147 , Issue.1 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 19
    • 0023451832 scopus 로고
    • Systolic algorithms for the longest common subsequence problem
    • Yang C.B., and Lee R.C.T. Systolic algorithms for the longest common subsequence problem. Journal of the Chinese Institute of Engineers 10 6 (1987) 691-699
    • (1987) Journal of the Chinese Institute of Engineers , vol.10 , Issue.6 , pp. 691-699
    • Yang, C.B.1    Lee, R.C.T.2
  • 20
    • 12244307876 scopus 로고    scopus 로고
    • A fast algorithm for computing a longest common increasing subsequence
    • Yang I.-H., Huang C.-P., and Chao K.-M. A fast algorithm for computing a longest common increasing subsequence. Information Processing Letters 93 5 (2005) 249-253
    • (2005) Information Processing Letters , vol.93 , Issue.5 , pp. 249-253
    • Yang, I.-H.1    Huang, C.-P.2    Chao, K.-M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.