메뉴 건너뛰기




Volumn 4580 LNCS, Issue , 2007, Pages 142-149

Finding compact structural motifs

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION ALGORITHMS; BIOINFORMATICS; COMPUTATIONAL COMPLEXITY; GENETIC ALGORITHMS; PROBLEM SOLVING;

EID: 37849047019     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-73437-6_16     Document Type: Conference Paper
Times cited : (7)

References (20)
  • 1
    • 0035838976 scopus 로고    scopus 로고
    • Aloy, P., Querol, E., Aviles, F.X., Sternberg, M.J.: Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. Journal of Molecular Biology 311, 395-C408 (2001)
    • Aloy, P., Querol, E., Aviles, F.X., Sternberg, M.J.: Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. Journal of Molecular Biology 311, 395-C408 (2001)
  • 5
    • 0031792943 scopus 로고    scopus 로고
    • Geometric invariant core for the vl and vh domains of immunoglobulin molecules
    • Gelfand, I., Kister, A., Kulikowski, C., Stoyanov, O.: Geometric invariant core for the vl and vh domains of immunoglobulin molecules. Protein Engineering 11, 1015-1025 (1998)
    • (1998) Protein Engineering , vol.11 , pp. 1015-1025
    • Gelfand, I.1    Kister, A.2    Kulikowski, C.3    Stoyanov, O.4
  • 6
    • 0010222891 scopus 로고
    • Average core structure and variability measures for protein families: Application to the immunoglobins
    • Gerstein, M., Altman, R.B.: Average core structure and variability measures for protein families: application to the immunoglobins. Journal of Molecular Biology 112, 535-542 (1995)
    • (1995) Journal of Molecular Biology , vol.112 , pp. 535-542
    • Gerstein, M.1    Altman, R.B.2
  • 7
    • 0028871926 scopus 로고
    • Dali: A network tool for protein structure comparison
    • Holm, L., Sander, C.: Dali: a network tool for protein structure comparison. Trends Biochem Sci. 20(11), 478-480 (1995)
    • (1995) Trends Biochem Sci , vol.20 , Issue.11 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 9
    • 4344656723 scopus 로고    scopus 로고
    • Approximate protein structural alignment in polynomial time
    • Kolodny, R., Linial, N.: Approximate protein structural alignment in polynomial time. Proc. Natl Acad. Sci. 101, 12201-12206 (2004)
    • (2004) Proc. Natl Acad. Sci , vol.101 , pp. 12201-12206
    • Kolodny, R.1    Linial, N.2
  • 12
    • 4544278737 scopus 로고    scopus 로고
    • Hard problems in similarity searching
    • Moan, C., Rusu, I.: Hard problems in similarity searching. Discrete Appl. Math. 144(1-2), 213-227 (2004)
    • (2004) Discrete Appl. Math , vol.144 , Issue.1-2 , pp. 213-227
    • Moan, C.1    Rusu, I.2
  • 13
    • 0032945191 scopus 로고    scopus 로고
    • Cora-topological fingerprints for protein structural familie
    • Orengo, C.: Cora-topological fingerprints for protein structural familie. Protein Science 8, 699-715 (1999)
    • (1999) Protein Science , vol.8 , pp. 699-715
    • Orengo, C.1
  • 14
    • 0029948001 scopus 로고    scopus 로고
    • Ssap: Sequential structure alignment program for protein structure comparison
    • Orengo, C., Taylor, W.: Ssap: Sequential structure alignment program for protein structure comparison. Methods in Enzymology 266, 617-635 (1996)
    • (1996) Methods in Enzymology , vol.266 , pp. 617-635
    • Orengo, C.1    Taylor, W.2
  • 15
    • 33645465515 scopus 로고    scopus 로고
    • The multiple common point set problem and its application to molecule binding pattern detection
    • Shatsky, M., Shulman-Peleg, A., Nussinov, R., Wolfson, H.: The multiple common point set problem and its application to molecule binding pattern detection. Journal of Computational Biology 13(2), 407-428 (2006)
    • (2006) Journal of Computational Biology , vol.13 , Issue.2 , pp. 407-428
    • Shatsky, M.1    Shulman-Peleg, A.2    Nussinov, R.3    Wolfson, H.4
  • 16
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension ce of the optimal path
    • Shindyalov, I.N., Bourne, P.E.: Protein structure alignment by incremental combinatorial extension ce of the optimal path. Protein Eng. 11(9), 739-747 (1998)
    • (1998) Protein Eng , vol.11 , Issue.9 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 17
    • 0000840656 scopus 로고
    • Structural similarity of dna-binding domains ofbacteriophage repressors and the globin core
    • Subbiah, S., Laurents, D.V., Levitt, M.: Structural similarity of dna-binding domains ofbacteriophage repressors and the globin core. Current Biology 3, 141-148 (1993)
    • (1993) Current Biology , vol.3 , pp. 141-148
    • Subbiah, S.1    Laurents, D.V.2    Levitt, M.3
  • 18
    • 33745766839 scopus 로고    scopus 로고
    • A parameterized algorithm for protein structure alignment
    • Xu, J., Jiao, F., Berger, B.: A parameterized algorithm for protein structure alignment. In: RECOMB, pp. 488-499 (2006)
    • (2006) RECOMB , pp. 488-499
    • Xu, J.1    Jiao, F.2    Berger, B.3
  • 19
    • 8444245971 scopus 로고    scopus 로고
    • Approximate multiple protein structure alignment using the sum-of-pairs distance
    • Ye, J., Janardan, R.: Approximate multiple protein structure alignment using the sum-of-pairs distance. Journal of Computational Biology 11(5), 986-1000 (2004)
    • (2004) Journal of Computational Biology , vol.11 , Issue.5 , pp. 986-1000
    • Ye, J.1    Janardan, R.2
  • 20
    • 17644392830 scopus 로고    scopus 로고
    • Tm-align: A protein structure alignment algorithm based on the tm-score
    • Zhang, Y., Skolnick, J.: Tm-align: a protein structure alignment algorithm based on the tm-score. Nucleic Acids Research 33, 2302-2309 (2005)
    • (2005) Nucleic Acids Research , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.