Sharp melting transitions in DNA hybrids without aggregate dissolution: Proof of neighboring-duplex cooperativity

Journal of the American Chemical Society

Volumn 129, Issue 50, 2007, Pages 15535-15540

  Gibbs Davis, Julianne M ^a   Schatz, George C ^a   Nguyen, SonBinh T ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOLUTION; NANOPARTICLES; PHASE TRANSITIONS; THERMOANALYSIS;

AGGREGATE SYSTEM; MELTING TRANSITIONS; THERMODYNAMIC MODEL;

DNA;

DNA HYBRID; DOUBLE STRANDED DNA; GOLD; NANOPARTICLE; POLYMER;

ARTICLE; DISSOLUTION; DNA MODIFICATION; HYBRIDIZATION; MELTING POINT; MOLECULAR INTERACTION; PHASE TRANSITION; QUANTITATIVE ANALYSIS; THERMAL ANALYSIS; THERMODYNAMICS;

BASE SEQUENCE; DNA; IONS; MODELS, CHEMICAL; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; TRANSITION TEMPERATURE;

EID: 37849041009     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja073034g     Document Type: Article

References (34)

1. Rosi, N. L.; Mirkin, C. A. Chem. Rev. 2005, 105, 1547-1562.
2. Kanan, M. W.; Rozenman, M. M.; Sakurai, K.; Snyder, T. M.; Liu, D. R. Nature 2004, 431, 545-549.
3. Kinbara, K.; Aida, T. Chem. Rev. 2005, 105, 1377-1400.
4. Dupraz, C. J. F.; Nickels, P.; Beierlein, U.; Huynh, W. U.; Simmel, F. C. Superlattices Microstruct. 2004, 33, 369-379.
5. Park, S.-J.; Taton, T. A.; Mirkin, C. A. Science 2002, 295, 1503-1506.
6. Taton, T. A.; Lu, G.; Mirkin, C. A. J. Am. Chem. Soc. 2001, 123, 5164-5165.
7. Taton, T. A.; Mirkin, C. A.; Letsinger, R. L. Science 2000, 289, 1757-1760.
8. Gibbs, J. M.; Park, S.-J.; Anderson, D. R.; Watson, K. J.; Nguyen, S. T.; Mirkin, C. A. J. Am. Chem. Soc. 2005, 127, 1170-1178.
9. Watson, K. J.; Park, S. J.; Nguyen, S. T.; Mirkin, C. A. J. Am. Chem. Soc. 2001, 123, 5592-5593.
10. Shchepinov, M. S.; Mir, K. U.; Elder, J. K.; Frank-Kamenetskii, M. D.; Southern, E. M. Nucleic Acids Res. 1999, 27, 3035-3041.
11. Park, S. Y.; Stroud, D. Phys. Rev. B 2003, 67, 212202/1-212202/4.
12. Kiang, C. H. Physica A 2003, 321, 164-169.
13. Lukatsky, D. B.; Frenkel, D. Phys. Rev. Lett. 2004, 92, 068302/1-068302/4.
14. Sun, Y.; Harris, N. C.; Kiang, C. H. Physica A 2005, 354, 1-9.
15. Long, H.; Kudlay, A.; Schatz, G. C. J. Phys. Chem. B 2006, 110, 2918-2926.
16. Lehn, J.-M. Prog. Polym. Sci. 2005, 30, 814-831.
17. Yount, W. C.; Juwarker, H.; Craig, S. L. J. Am. Chem. Soc. 2003, 125, 15302-15303.
18. Jin, R.; Wu, G.; Li, Z.; Mirkin, C. A.; Schatz, G. C. J. Am. Chem. Soc. 2003, 125, 1643-1654.
19. Czlapinski, J. L.; Sheppard, T. L. J. Am. Chem. Soc. 2001, 123, 8618-8619.
20. Li, X.; Liu, D. R. Angew. Chem., Int. Ed. 2004, 43, 4848-4870.
21. Storhoff, J. J.; Lazarides, A. A.; Mucic, R. C.; Mirkin, C. A.; Letsinger, R. L.; Schatz, G. C. J. Am. Chem. Soc. 2000, 122, 4640-4650.
22. Park, S. Y.; Lee, J.-S.; Georganopoulou, D. C.; Mirkin, C. A.; Schatz, G. C. J. Phys. Chem. B 2006, 110, 12673-12681.
23. Purrello, R.; Raudino, A.; Scolaro, L. M.; Loisi, A.; Bellacchio, E.; Lauceri, R. J. Phys. Chem. B 2000, 104, 10900-10908.
24. Long, H.; Schatz, G. C. Mater. Res. Soc. Symp. Proc. 2003, 735, C10.1.1.
25. Krakauer, H.; Sturtevant, J. M. Biopolymers 1968, 6, 491-512.
26. Record, M. T., Jr. Biopolymers 1967, 5, 975-992.
27. Park, S. Y.; Gibbs-Davis, J. M.; Nguyen, S. T.; Schatz, G. C. J. Phys. Chem. B 2007, 111, 8785-8791.
28. Borer, P. N.; Dengler, B.; Tinoco, I., Jr.; Uhlenbeck, O. C. J. Mol. Biol. 1974, 86, 843-853.
29. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601-1620.
30. Previously we found that the melting behavior of a DNA:polymer-DNA duplex was in fact very similar to that of the unmodified DNA:DNA duplex of the same sequence. See ref 8.
31. Vasiliskov, V. A.; Prokopenko, D. V.; Mirzabekov, A. D. Nucleic Acids Res. 2001, 29, 2303-2313.
32. Silverman, A. P.; Kool, E. T. Chem. Rev. 2006, 106, 3775-3789.
33. Robertson, A.; Sinclair, A. J.; Philp, D. Chem. Soc. Rev. 2000, 29, 141-152.
34. Ye, J.; Gat, Y.; Lynn, D. G. Angew. Chem., Int. Ed. 2000, 39, 3641-3643.