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Volumn 4580 LNCS, Issue , 2007, Pages 4-15

Speeding up HMM decoding and training by exploiting sequence repetitions

Author keywords

Compression; Dynamic programming; HMM; Viterbi

Indexed keywords

DECODING; DISCRETE TIME CONTROL SYSTEMS; DYNAMIC PROGRAMMING; PROBLEM SOLVING; VITERBI ALGORITHM;

EID: 37849040168     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-73437-6_4     Document Type: Conference Paper
Times cited : (17)

References (22)
  • 1
    • 0030129729 scopus 로고    scopus 로고
    • Benson, G., Amir, A., Farach, M.: Let sleeping files lie: Pattern matching in Z-compressed files. Journal of Comp. and Sys. Sciences 52(2), 299-307 (1996)
    • Benson, G., Amir, A., Farach, M.: Let sleeping files lie: Pattern matching in Z-compressed files. Journal of Comp. and Sys. Sciences 52(2), 299-307 (1996)
  • 2
    • 0027800766 scopus 로고
    • HMM based optical character recognition in the presence of deterministic transformations
    • Agazzi, O., Kuo, S.: HMM based optical character recognition in the presence of deterministic transformations. Pattern recognition 26, 1813-1826 (1993)
    • (1993) Pattern recognition , vol.26 , pp. 1813-1826
    • Agazzi, O.1    Kuo, S.2
  • 4
    • 0001862769 scopus 로고
    • An inequality and associated maximization technique in statistical estimation for probabilistic functions of a Markov process
    • Baum, L.E.: An inequality and associated maximization technique in statistical estimation for probabilistic functions of a Markov process. Inequalities 3, 1-8 (1972)
    • (1972) Inequalities , vol.3 , pp. 1-8
    • Baum, L.E.1
  • 5
    • 0023472826 scopus 로고
    • Cpg-rich islands as gene markers in the vertebrate nucleus
    • Bird, A.P.: Cpg-rich islands as gene markers in the vertebrate nucleus. Trends in Genetics 3, 342-347 (1987)
    • (1987) Trends in Genetics , vol.3 , pp. 342-347
    • Bird, A.P.1
  • 7
    • 0005875621 scopus 로고
    • An improved algorithm for computing the edit distance of run length coded strings
    • Bunke, H., Csirik, J.: An improved algorithm for computing the edit distance of run length coded strings. Information Processing Letters 54, 93-96 (1995)
    • (1995) Information Processing Letters , vol.54 , pp. 93-96
    • Bunke, H.1    Csirik, J.2
  • 9
    • 33244455151 scopus 로고
    • Hidden Markov chains and the analysis of genome structure
    • Churchill, G.A.: Hidden Markov chains and the analysis of genome structure. Computers Chem. 16, 107-115 (1992)
    • (1992) Computers Chem , vol.16 , pp. 107-115
    • Churchill, G.A.1
  • 13
    • 84937429802 scopus 로고    scopus 로고
    • Karkkainen, J., Navarro, G., Ukkonen, E.: Approximate string matching over ZivLempel compressed text. In: Giancarlo, R., Sankoff, D. (eds.) CPM 2000. LNCS, 1848, pp. 195-209. Springer, Heidelberg (2000)
    • Karkkainen, J., Navarro, G., Ukkonen, E.: Approximate string matching over ZivLempel compressed text. In: Giancarlo, R., Sankoff, D. (eds.) CPM 2000. LNCS, vol. 1848, pp. 195-209. Springer, Heidelberg (2000)
  • 15
    • 24244452726 scopus 로고    scopus 로고
    • Approximate matching of run-length compressed strings
    • Proc. 12th Annual Symposium On Combinatorial Pattern Matching CPM, Springer, Heidelberg
    • Makinen, V., Navarro, G., Ukkonen, E.: Approximate matching of run-length compressed strings. In: Proc. 12th Annual Symposium On Combinatorial Pattern Matching (CPM). LNCS, vol. 1645, pp. 1-13. Springer, Heidelberg (1999)
    • (1999) LNCS , vol.1645 , pp. 1-13
    • Makinen, V.1    Navarro, G.2    Ukkonen, E.3
  • 16
    • 0942271169 scopus 로고    scopus 로고
    • A text compression scheme that allows fast searching directly in the compressed file
    • CPM, Springer, Heidelberg
    • Manber, U.: A text compression scheme that allows fast searching directly in the compressed file. In: CPM 2001. LNCS, vol. 2089, pp. 31-49. Springer, Heidelberg (2001)
    • (2001) LNCS , vol.2089 , pp. 31-49
    • Manber, U.1
  • 19
    • 84912109348 scopus 로고    scopus 로고
    • Shibata, Y., Kida, T., Fukamachi, S., Takeda, M., Shinohara, A., Shinohara, T., Arikawa, S.: Speeding up pattern matching by text compression. In: Bongiovanni, G., Petreschi, R., Gambosi, G. (eds.) CIAC 2000. LNCS, 1767, pp. 306-315. Springer, Heidelberg (2000)
    • Shibata, Y., Kida, T., Fukamachi, S., Takeda, M., Shinohara, A., Shinohara, T., Arikawa, S.: Speeding up pattern matching by text compression. In: Bongiovanni, G., Petreschi, R., Gambosi, G. (eds.) CIAC 2000. LNCS, vol. 1767, pp. 306-315. Springer, Heidelberg (2000)
  • 20
    • 34250487811 scopus 로고
    • Gaussian elimination is not optimal
    • Strassen, V.: Gaussian elimination is not optimal. Numerische Mathematik 13, 354-356 (1969)
    • (1969) Numerische Mathematik , vol.13 , pp. 354-356
    • Strassen, V.1
  • 21
    • 84935113569 scopus 로고
    • Error bounds for convolutional codes and an asymptotically optimal decoding algorithm
    • Viterbi, A.: Error bounds for convolutional codes and an asymptotically optimal decoding algorithm. IEEE Transactions on Information Theory IT-13, 260-269 (1967)
    • (1967) IEEE Transactions on Information Theory , vol.IT-13 , pp. 260-269
    • Viterbi, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.