PCR primers for specific detection of Phytophthora cinnamomi

Australasian Plant Pathology

Volumn 37, Issue 1, 2008, Pages 69-71

  O'Brien, P A ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PHYTOPHTHORA CINNAMOMI;

EID: 37849007045     PISSN: 08153191     EISSN: None     Source Type: Journal    
DOI: 10.1071/AP07082     Document Type: Article

References (21)

1. Bilodeau GJ, Lévesque CA, de Cock AWAM, Duchaine C, Brière S, Uribe P, Martin FN, Hamelin RC (2007) Molecular Detection of Phytophthora ramorum by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons. Phytopathology 97, 632-642. doi: 10.1094/PHYTO-97-5-0632
2. Braid MD, Daniels LM, Kitts CL (2003) Removal of PCR inhibitors from soil DNA by chemical flocculation. Journal of Microbiological Methods 52, 389-393. doi: 10.1016/S0167-7012(02)00210-5
3. Cho JC, Lee DH, Cho YC, Kim SJ (1996) Direct extraction of DNA from soil for amplification of IDS rRNA gene sequences by polymerase chain reaction. Journal of Microbiology (Seoul, Korea) 34, 229-235.
4. Cullen D, Hirsch P (1998) Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biology & Biochemistry 30, 983-993. doi: 10.1016/S0038-0717(98)00001-7
5. Dobrowolski MP, O'Brien PA (1993) Use of RAPD-PCR to isolate a species specific DNA probe for Phytophthora cinnamomi. FEMS Microbiology Letters 113, 43-47. doi: 10.1111/j.1574-6968.1993.tb06485.x
6. Driessen SA, O'Brien PA, Hardy GES (2004) Diversity of Puccinia boroniae assessed by teliospore morphology and restriction fragment patterns of ribosomal DNA. Australasian Plant Pathology 33, 77-82. doi: 10.1071/AP03091
7. Duncan S, Barton JE, O'Brien PA (1993) Analysis of variation in isolates of Rhizoctonia solani by random amplified polymorphic DNA assay. Mycological Research 97, 1075-1082.
8. Frackman S, Kobs G, Simpson D, Storts D (1998) Betaine and DMSO: enhancing agents for PCR. Promega Notes 65, 27-30.
9. Graham G, Meyers P, Henry R (1994) A simplified method for preparation of fungal DNA for PCR and RAPD analysis. BioTechniques 16, 48-50.
10. Grote D, Olmos A, Kofoet A, Tuset J, Bertolini E, Cambra M (2002) Specific and sensitive detection of Phytophthora nicotianae by simple and nested-PCR. European Journal of Plant Pathology 108, 197-207. doi: 10.1023/A:1015139410793
11. Hayden K, Ivors K, Wilkinson C, Garbelotto M (2006) TaqMan chemistry for Phytophthora ramorum detection and quantification, with a comparison of diagnostic methods. Phytopathology 96, 846-854. doi: 10.1094/PHYTO-96-0846
12. Huberli D, Tommerup IC, Hardy GESJ (2000) False-negative isolations or absence of lesions may cause mis-diagnosis of diseased plants infected with Phytophthora cinnamomi. Australasian Plant Pathology 29, 164-169. doi: 10.1071/AP00029
13. Hussain S, Lees AK, Duncan JM, Cooke DEL (2005) Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil. Plant Pathology 54, 373-382. doi: 10.1111/j.1365-3059.2005.01175.x
14. Ioos R, Laugustin L, Schenck N, Rose S, Husson C, Frey P (2006) Usefulness of single copy genes containing introns in Phytophthora for the development of detection tools for the regulated species P. ramorum and P. fragariae. European Journal of Plant Pathology 116, 171-176. doi: 10.1007/s10658-006-9051-2
15. Lane CR, Hughes KJD, Beales PA (2005) Development of a PCR diagnostic assay and isolate profiling for anew Phytophthora species (P. kernoviae) threatening UK trees and ornamentals. CSL, PH0310, York.
16. Marks GC, Kassaby FY (1974) Detection of Phytophthora cinnamomi in soil. Australian Forestry 63, 198-203.
17. Sambrook J, Fritsch EF, Maniatis T (1989) 'Molecular cloning: a laboratory manual.' 2nd edn. (Cold Spring Harbor Laboratory: Cold Spring Harbor, NY)
18. Shearer BL, Crane CE, Barrett S, Cochrane A (2007) Phytophthora cinnamomi invasion, a major threatening process to conservation of flora diversity in the South-west Botanical Province of Western Australia. Australian Journal of Botany 55, 225-238. doi: 10.1071/BT06019
19. Stammler G, Seemuller E (1994) Detection of Phytophthora fragariae var. rubi in infected raspberry roots by PCR. In 'Modern assays for plant pathogenic fungi'. (Eds A Schots, FM Dewey, R Oliver) pp. 135-139. (CAB International: Oxford)
20. Tomlinson JA, Barker I, Boonham N (2007) Faster, simpler, more-specific methods for improved molecular detection of Phytophthora ramorum in the field. Applied and Environmental Microbiology 73, 4040-4047. doi: 10.1128/AEM.00161-07
21. Williams JGK, Hanafey MK, Rafalski JA, Tingey SV (1993) Genetic analysis using Random Amplified Polymorphic DNA markers. In 'Methods in enzymology'. pp. 704-740. (Academic Press: New York)