Investigating the structural and functional consequences of circular permutation on lipase B from Candida antarctica

ChemBioChem

Volumn 8, Issue 16, 2007, Pages 1989-1996

  Qian, Zhen ^a   Fields, Christina J ^a   Lutz, Stefan ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

Candida antarctica; Circular permutation; Fluorescence spectroscopy; Kinetics; Lipases; Structure activity relationships

Indexed keywords

LIPASE B;

ARTICLE; CANDIDA ANTARCTICA; CONTROLLED STUDY; ENANTIOSELECTIVITY; KINETICS; NONHUMAN; PRIORITY JOURNAL; SPECTROSCOPY; THERMOSTABILITY; WILD TYPE;

ALCOHOLS; BINDING SITES; CANDIDA; CARBOXYLIC ACIDS; CATALYSIS; CIRCULAR DICHROISM; ISOENZYMES; KINETICS; LIPASE; MODELS, MOLECULAR; MOLECULAR STRUCTURE; PROTEIN ENGINEERING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; STEREOISOMERISM; STRUCTURE-ACTIVITY RELATIONSHIP;

CANDIDA ANTARCTICA;

EID: 37549058473     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.200700373     Document Type: Article

References (41)

1. a) K. J. Woycechowsky, K. Vamvaca, D. Hilvert, Adv. Enzymol. Relat. Area. Mol. Biol. 2007, 75, 241-294;
2. b) R. A. Chica, N. Doucet, J. N. Pelletier, Curr. Opin. Biotechnol. 2005, 16, 378-384.
3. a) M. Holmquist, Curr. Protein Pept. Sci. 2000, 1, 209-235;
4. b) M. Nardini, B. W. Dijkstra, Curr. Opin. Struct. Biol. 1999, 9, 732-737.
5. a) P. Berglund, Biomol. Eng. 2001, 18, 13-22;
6. U. T. Bornscheuer, R. J. Kazlauskas, Hydrolases in Organic Synthesis: Regio- and Stereoselective Biotransformations, Wiley-VCH, Weinheim, 1999;
7. b) M. Freemantle, Chem. Eng. News 2004, 82, 25;
8. c) P. Villeneuve, J. M. Muderhwa, J. Graille, M. J. Haas, J. Mol. Catal. B Enzym. 2000, 9, 113-148.
9. a) E. Henke, U. T. Bornscheuer, Biol. Chem. 1999, 380, 1029-1033;
10. b) G. P. Horsman, A. M. F. Liu, E. Henke, U. T. Bornscheuer, R. J. Kazlauskas, Chem. Eur. J. 2003, 9, 1933-1939;
11. c) D. B. Janssen, Curr. Opin. Chem. Biol. 2004, 8, 150-159;
12. d) Y. Koga, K. Kato, H. Nakano, T. Yamane, J. Mol. Biol. 2003, 331, 585-592;
13. e) K. Liebeton, A. Zonta, K. Schimossek, M. Nardini, D. Lang, B. W. Dijkstra, M. T. Reetz, K. E. Jaeger, Chem. Biol. 2000, 7, 709-718;
14. f) S. Patkar, J. Vind, E. Kelstrup, M. W. Christensen, A. Svendsen, K. Borch, O. Kirk, Chem. Phys. Lipids 1998, 93, 95-101;
15. g) D. Rotticci, J. C. Rotticci-Mulder, S. Denman, T. Norin, K. Huit, ChemBioChem 2001, 2, 766-770;
16. h) L. Rui, L. Cao, W. Chen, K. F. Reardon, T. K. Wood, J. Biol. Chem. 2004, 279, 46810-46817;
17. i) W. C. Suen, N. Zhang, L. Xiao, V. Madison, A. Zaks, Protein Eng. Des. Sel. 2004, 17, 133-140;
18. j) B. van Loo, J. H. Spelberg, J. Kingma, T. Sonke, M. G. Wubbolts, D. B. Janssen, Chem. Biol. 2004, 11, 981-990.
19. J. Ottosson, J. C. Rotticci-Mulder, D. Rotticci, K. Huit, Protein Sci. 2001, 10, 1769-1774.
20. a) M. Hahn, K. Piotukh, R. Borriss, U. Heinemann, Proc. Natl. Acad. Sci. USA 1994, 91, 10417-10421;
21. b) B. A. Manjasetty, J. Hennecke, R. Glockshuber, U. Heinemann, Acta Crystallogr. Sect. D Biol. Crystallogr. 2004, 60, 304-309.
22. U. Pieper, K. Hayakawa, Z. Li, O. Herzberg, Biochemistry 1997, 36, 8767-8774.
23. P. Tougard, T. Bizebard, M. Ritco-Vonsovici, P. Minard, M. Desmadril, Acta Crystallogr. Sect. D Biol. Crystallogr. 2002, 58, 2018-2023.
24. a) A. Jeltsch, J. Mol. Evol. 1999, 49, 161-164;
25. b) Y. Lindqvist, G. Schneider, Curr. Opin. Struct. Biol. 1997, 7, 422-427;
26. c) C. P. Ponting, R. B. Russell, Trends Biochem. Sci. 1995, 20, 179-180.
27. a) G. S. Baird, D. A. Zacharias, R. Y. Tsien, Proc. Natl. Acad. Sci. USA 1999, 96, 11241-11246;
28. b) R. Graf, H. K. Schachman, Proc. Natl. Acad. Sci. USA 1996, 93, 11591-11596.
29. a) J. Hennecke, P. Sebbel, R. Glockshuber, J. Mol. Biol. 1999, 286, 1197-1215;
30. b) M. Iwakura, T. Nakamura, C. Yamane, K. Maki, Nat. Struct. Biol. 2000, 7, 580-585;
31. c) K. Wieligmann, B. Norledge, R. Jaenicke, E. M. Mayr, J. Mol. Biol. 1998, 280, 721-729.
32. Z. Qian, S. Lutz, J. Am. Chem. Soc. 2005, 127, 13466-13467.
33. P. T. Beernink, Y. R. Yang, R. Graf, D. S. King, S. S. Shah, H. K. Schachman, Protein Sci. 2001, 10, 528-537.
34. T. Hisano, K. I. Kasuya, Y. Tezuka, N. Ishii, T. Kobayashi, M. Shiraki, E. Oroudjev, H. Hansma, T. Iwata, Y. Doi, T. Saito, K. Miki, J. Mol. Biol. 2006, 356, 993-1004.
35. J. Uppenberg, M. T. Hansen, S. Patkar, T. A. Jones, Structure 1994, 2, 293-308.
36. R. J. Kazlauskas, Trends Biotechnol. 1994, 12, 464-472.
37. a) A. Lobley, L. Whitmore, B. A. Wallace, Bioinformatics 2002, 18, 211-212;
38. b) L. Whitmore, B. A. Wallace, Nucleic Acids Res. 2004, 32, W668-W673.
39. V. Chu, S. Freitag, I. Le Trong, R. E. Stenkamp, P. S. Stayton, Protein Sci. 1998, 7, 848-859.
40. a) R. Fujii, Y. Utsunomiya, J. Hiratake, A. Sogabe, K. Sakata, Biochim. Biophys. Acta Mol. Cell Biol. Lipids 2003, 1631, 197-205;
41. b) D. Rotticci, T. Norin, K. Huit, M. Martinelle, Biochim. Biophys. Acta Mol. Cell Biol. Lipids 2000, 1483, 132-140.