Structural and functional diversity of soil microbes is affected by elevated [CO2] and N addition in a poplar plantation

Journal of Soils and Sediments

Volumn 7, Issue 6, 2007, Pages 399-405

  Lagomarsino, Alessandra ^a   Knapp, Brigette A ^b   Moscatelli, M Cristina ^a   De Angelis, Paolo ^a   Grego, Stefano ^a   Insam, Heribert ^b  

^a UNIVERSITY OF TUSCIA   (Italy)

^b UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

CLPP; Community level physiological profiling; Elevated CO2 ; Microbial communities; MicroResp CLPP; N fertilization; PCR denaturing gradient gel electrophoresis; PCR DGGE; Poplars; Soil microbes

Indexed keywords

CARBON DIOXIDE; COMMUNITY STRUCTURE; FERTILIZER APPLICATION; FUNGUS; GENETIC STRUCTURE; MICROBIAL COMMUNITY; NITROGEN; SOIL MICROORGANISM;

EURASIA; EUROPE; ITALY; SOUTHERN EUROPE;

BACTERIA (MICROORGANISMS); FUNGI; POPULUS; POPULUS ALBA; POPULUS NIGRA; POPULUS X CANADENSIS;

EID: 37549051393     PISSN: 14390108     EISSN: None     Source Type: Journal    
DOI: 10.1065/jss2007.04.223     Document Type: Article

References (37)

1. Agnelli A, Ascher J, Corti G, Ceccherini MT, Nannipieri P, Pietramellara G (2004): Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA. Soil Biol Biochem 36, 859-868
2. 2 growth enhancement. Plant Soil 187, 119-131
3. 2 enrichment (FACE) enhances biomass production in a short-rotation poplar plantation (POPFACE). Tree Phys 23, 805-814
4. Campbell CD, Chapman SJ, Cameron CM, Davidson MS, Potts JM (2003): A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrates amendments so as to determine the Physiological Profiles of Soil Microbial Communities by using the whole soil. Appl Environ Microbiol 3593-3599
5. 2 on plant nutrition and soil organic matter. Plant Soil 187, 277-288
6. 3. Oecol 147, 143-154
7. 2 enrichment (POPFACE). Glob Change Biol 11, 1-12
8. Degens BP (1999): Catabolic response profiles differ between microorganisms grown in soils. Soil Biol Biochem 31, 475-477
9. Felske A, Engelen B, Nübel U, Backhaus H (1996): Direct ribosomal isolation from soil to extract bacterial rRNA for community analysis. Appl Environ Microbiol 62, 4162-4167
10. Fontaine S, Bardoux G, Abbadie L, Mariotti A (2004): Carbon input to soil may decrease soil carbon content. Ecology letters 7, 314-320
11. Fu S, Cheng W (2002): Rhizosphere priming effects on the decomposition of soil organic matter in C4 and C3 grassland soils. Plant Soil 238, 289-294
12. Gomes NCM, Fagbola O, Costa R, Rumjanek NG, Buchner A, Mendona-Hagler L, Smalla C (2003): Dynamics of fungal communities in bulk and Maize rhizosphere soil in the Tropics. Appl Environ Microbiol 69, 3758-3766
13. 2 on the metabolic diversity of microbial communities in N-limited grass swards. Plant Soil 203, 289-300
14. Griffiths BS, Ritz K, Ebblewhite N, Paterson E, Killham K (1998): Ryegrass rhizosphere microbial community structure under elevated carbon dioxide concentrations, with observation of wheat rhizosphere. Soil Biol Biochem 30, 315-321
15. Heinemeyer O, Insam H, Kaiser EA, Walenzik G (1989): Soil microbial biomass measurements: An automated technique based on infrared analysis. Plant Soil 116, 191-195
16. 2 in an artificial tropical ecosystem. J Microb Meth 36, 45-54
17. Insam H, Goberna M (2004): Community level physiological profiles (Biolog substrate use tests) of environmental samples. In: Akkermans ADL, van Elsas JD, DeBruijn FJ (eds), Molecular Microbial Ecology Manual, Second Edition, Kluwer Academic Publishers, 5.3.2: 1-8
18. Johansson M (2001): Composition of the saprotrophic fungi in Calluna heathland soil and the influence of ammonium nitrate application. Water Air Soil Pollut: Focus 1, 231-239
19. 2 on the fungal community in a coastal Scrub Oak forest soil investigated with Terminal-Restriction Fragment Length Polymorphism Analysis. Appl Environ Microbiol 68, 4370-4376
20. Kowalchuk G (1999): Fungal community analysis using denaturing gradient gel elettrophoresis (DGGE). In: Akkermans ADL, van Elsas JD, De Bruijn FG (eds), Molecular Microbial Ecology Manual, vol. 3.4.6. Kluwer Academic Publisher, Dordrecht, pp 1-16
21. Kuzyakov Y (2002): Review: Factors affecting rhizosphere priming effects. J Plant Nutr Soil Sc 165, 382-396
22. 2 and nitrogen fertilization. Sc Total Env 372, 256-265
23. 2 using a free air enrichment system POPFACE. Glob Change Biol 9, 838-848
24. 2 alter community-level physiological profiles and enzyme activities in alpine grassland. J Microb Meth 36, 35-43
25. Merckx RA, Dijkstra A, Den Hartog A, Van Veen JA (1987): Production of root-derived material and associated microbial growth in soil at different nutrient levels. Biol Fert Soils 5, 126-132
26. 2. Appl Soil Ecol 30, 162-173
27. Moscatelli MC, Lagomarsino A, Marinari S, De Angelis P, Grego S (2005b): Soil microbial indices as bioindicators of environmental changes in a poplar plantation. Ecol indicators 5, 171-179
28. Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003): Microbial diversity and soil functions. Eur J Soil Sci 54, 655-670
29. Paul E.A, Clark FE (1989): Soil Microbiology and Biochemistry, Academic Press, San Diego, CA
30. 2 Acta Oecologia 18, 377-381
31. Pennanen T, Caul S, Daniell TJ, Griffiths BS, Ritz K, Wheatley RE (2004): Community-level responses of metabolically-active soil microorganisms to the quantity and quality of substrate inputs. Soil Biol Biochem 36, 841-848
32. Rouhier H, Read DJ (1998): Plant and fungal responses to elevated atmospheric carbon dioxide in mycorrhizal seedlings of Pinus Sylvestris. Environ Exp Bot 40, 237-246
33. Sarathchandra SU, Ghani A, Yeates GW, Burch G, Cox NR (2001): Effects of nitrogen and phosphate fertilizers on microbial and nematode diversity in pasture soils. Soil Biol Biochem 33, 953-964
34. Vainio EJ, Hantula J, (2000): Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol Res 104, 927-936
35. 2 levels. Ecol Appl 1, 175-181
36. 2 enrichment and nitrogen fertilization. Plant Soil 234, 99-108
37. 2, fine roots and the response of soil microorganisms: A review and hypothesis. New Phytol 147, 201-222