메뉴 건너뛰기




Volumn 35, Issue 21, 2007, Pages 7324-7335

Mechanistic insights from the crystal structures of a feast/famine regulatory protein from Mycobacterium tuberculosis H37Rv

Author keywords

[No Author keywords available]

Indexed keywords

APOLIPOPROTEIN; ASPARAGINE DERIVATIVE; LEUCINE; LEUCINE RESPONSIVE REGULATORY PROTEIN; METHIONINE; PHENYLALANINE; THYROXINE; TRYPTOPHAN;

EID: 37549028005     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm850     Document Type: Article
Times cited : (32)

References (46)
  • 3
    • 0028111825 scopus 로고
    • Leucine responsive regulatory protein, a global regulator of metabolism in Escherichia coli
    • Calvo,J.M. and Mathews,R.G. (1994) Leucine responsive regulatory protein, a global regulator of metabolism in Escherichia coli. Microbiol. Rev., 58, 466-490.
    • (1994) Microbiol. Rev , vol.58 , pp. 466-490
    • Calvo, J.M.1    Mathews, R.G.2
  • 6
    • 0025730904 scopus 로고
    • Characterization of Lrp, an Escherichia coli regulatory protein that mediates a global response to leucine
    • Willins,D.A., Ryan,C.W., Platko,J.V. and Calvo,J.M. (1991) Characterization of Lrp, an Escherichia coli regulatory protein that mediates a global response to leucine. J. Biol. Chem., 266 10768-10774.
    • (1991) J. Biol. Chem , vol.266 , pp. 10768-10774
    • Willins, D.A.1    Ryan, C.W.2    Platko, J.V.3    Calvo, J.M.4
  • 7
    • 0028936476 scopus 로고
    • Characterization of bkdR-DNA binding in the expression of the bkd operon of Pseudomonas putida
    • Madhusudhan,K.T., Huang,N. and Sokatch,J.R. (1995) Characterization of bkdR-DNA binding in the expression of the bkd operon of Pseudomonas putida. J. Bacteriol., 177, 636-641.
    • (1995) J. Bacteriol , vol.177 , pp. 636-641
    • Madhusudhan, K.T.1    Huang, N.2    Sokatch, J.R.3
  • 8
    • 0033591426 scopus 로고    scopus 로고
    • An Lrp type transcriptional regulator from Agrobacterium tumefaciens condenses more than 100 nucleotides of DNA into globular nucleoprotein complexes
    • Jafri,S., Evoy,S., Cho,K., Craighead,H.G. and Winans,S.C. (1999) An Lrp type transcriptional regulator from Agrobacterium tumefaciens condenses more than 100 nucleotides of DNA into globular nucleoprotein complexes. J. Mol. Biol., 288, 811-824.
    • (1999) J. Mol. Biol , vol.288 , pp. 811-824
    • Jafri, S.1    Evoy, S.2    Cho, K.3    Craighead, H.G.4    Winans, S.C.5
  • 9
    • 0035965134 scopus 로고    scopus 로고
    • Leucine-regulated self-association of leucine responsive regulatory protein (Lrp) Escherichia coli
    • Chen,S., Rosner,M.H. and Calvo,J.M. (2001) Leucine-regulated self-association of leucine responsive regulatory protein (Lrp) Escherichia coli. J. Mol. Biol., 312, 625-635.
    • (2001) J. Mol. Biol , vol.312 , pp. 625-635
    • Chen, S.1    Rosner, M.H.2    Calvo, J.M.3
  • 11
    • 0022342556 scopus 로고
    • AsnC - an autogenously regulated activator of asparagines synthetase A transcription in E. coli
    • Kolling,R. and Lother,H. (1985) AsnC - an autogenously regulated activator of asparagines synthetase A transcription in E. coli. J. Bacteriol., 164, 310-315.
    • (1985) J. Bacteriol , vol.164 , pp. 310-315
    • Kolling, R.1    Lother, H.2
  • 12
    • 0022429761 scopus 로고
    • Site directed mutagenesis of the Escherichia coli chromosome near oriC: Identification and characterization of asnC, a regulatory element in E. coli asparagines metabolism
    • de Wind,N., de Jong,M., Meijer,M. and Stuitje,A.R. (1985) Site directed mutagenesis of the Escherichia coli chromosome near oriC: identification and characterization of asnC, a regulatory element in E. coli asparagines metabolism. Nucleic Acids Res., 13, 8797-8811.
    • (1985) Nucleic Acids Res , vol.13 , pp. 8797-8811
    • de Wind, N.1    de Jong, M.2    Meijer, M.3    Stuitje, A.R.4
  • 13
    • 0036270739 scopus 로고    scopus 로고
    • Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling
    • Betts,J.C., Lukey,P.T., Robb,L.C., McAdam,R.A. and Duncan,K. (2002) Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling. Mol. Microbiol., 43, 717-731.
    • (2002) Mol. Microbiol , vol.43 , pp. 717-731
    • Betts, J.C.1    Lukey, P.T.2    Robb, L.C.3    McAdam, R.A.4    Duncan, K.5
  • 14
    • 16644370432 scopus 로고    scopus 로고
    • Cloning, expression, purification and crystallization of a transcriptional regulatory protein (Rv3291c) from Mycobacterium tuberculosis H37Rv
    • Shrivastava,T., Kumar,S. and Ramachandran,R. (2004) Cloning, expression, purification and crystallization of a transcriptional regulatory protein (Rv3291c) from Mycobacterium tuberculosis H37Rv. Acta Crystallogr., D60, 1874-1876.
    • (2004) Acta Crystallogr , vol.D60 , pp. 1874-1876
    • Shrivastava, T.1    Kumar, S.2    Ramachandran, R.3
  • 15
    • 0030947960 scopus 로고    scopus 로고
    • A mycobacterial extracytoplasmic function sigma factor involved in survival following stress
    • Wu,Q.L., Kong,D.Q., Lam,K. and Husson,R.N. (1997) A mycobacterial extracytoplasmic function sigma factor involved in survival following stress. J. Bacteriol., 179, 2922-2929.
    • (1997) J. Bacteriol , vol.179 , pp. 2922-2929
    • Wu, Q.L.1    Kong, D.Q.2    Lam, K.3    Husson, R.N.4
  • 16
    • 33745285330 scopus 로고    scopus 로고
    • Identification of cell cycle regulators in Mycobacterium tuberculosis by inhibition of septum formation and global transcriptional analysis
    • Slayden,R.A., Knudson,D.L. and Belisle,J.T. (2006) Identification of cell cycle regulators in Mycobacterium tuberculosis by inhibition of septum formation and global transcriptional analysis. Microbiology 152, 1789-1797.
    • (2006) Microbiology , vol.152 , pp. 1789-1797
    • Slayden, R.A.1    Knudson, D.L.2    Belisle, J.T.3
  • 17
    • 10544251055 scopus 로고    scopus 로고
    • Effects of nutrition and growth rate on Lrp levels in Escherichia coli
    • Landgraf,J.R., Wu,J. and Calvo,J.M. (1996) Effects of nutrition and growth rate on Lrp levels in Escherichia coli. J. Bacteriol., 178, 6930-6936.
    • (1996) J. Bacteriol , vol.178 , pp. 6930-6936
    • Landgraf, J.R.1    Wu, J.2    Calvo, J.M.3
  • 18
    • 0345701347 scopus 로고    scopus 로고
    • Genes required for mycobacterial growth defined by high density mutagenesis
    • Sassetti,C.M., Boyd,D.H. and Rubin,E.J. (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol. Microbiol., 48, 77-84.
    • (2003) Mol. Microbiol , vol.48 , pp. 77-84
    • Sassetti, C.M.1    Boyd, D.H.2    Rubin, E.J.3
  • 19
    • 33846839291 scopus 로고    scopus 로고
    • Structure of the Escherichia coli Leucine-responsive regulatory protein Lrp reveals a novel octameric assembly
    • de Los Rios,S. and Perona,J.J. (2007) Structure of the Escherichia coli Leucine-responsive regulatory protein Lrp reveals a novel octameric assembly. J. Mol. Biol., 366, 1589-1602.
    • (2007) J. Mol. Biol , vol.366 , pp. 1589-1602
    • de Los Rios, S.1    Perona, J.J.2
  • 24
    • 1542267826 scopus 로고    scopus 로고
    • The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription
    • Koike,H., Ishijima,S.A., Clowney,L. and Suzuki,M. (2004) The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription. Proc. Natl Acad. Sci. USA, 101 2840-2845.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2840-2845
    • Koike, H.1    Ishijima, S.A.2    Clowney, L.3    Suzuki, M.4
  • 25
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford,M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248-254.
    • (1976) Anal. Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 27
    • 0028103275 scopus 로고    scopus 로고
    • Collaborative Computing Project No. 4. (1994) The CCP4 suite: Program for protein crystallography. Acta Crystallogr., D50, 760-763.
    • Collaborative Computing Project No. 4. (1994) The CCP4 suite: Program for protein crystallography. Acta Crystallogr., D50, 760-763.
  • 28
    • 0033119895 scopus 로고    scopus 로고
    • Automated MAD and MIR structure solution
    • Terwilliger,T.C. and Berendzen,J. (1999) Automated MAD and MIR structure solution. Acta Crystallogr., D55, 849-861.
    • (1999) Acta Crystallogr , vol.D55 , pp. 849-861
    • Terwilliger, T.C.1    Berendzen, J.2
  • 29
    • 0033896691 scopus 로고    scopus 로고
    • Maximum likelihood density modification
    • Terwilliger,T.C. (2000) Maximum likelihood density modification. Acta Crystallogr., D56, 965-972.
    • (2000) Acta Crystallogr , vol.D56 , pp. 965-972
    • Terwilliger, T.C.1
  • 30
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model building by template matching and iterative fragment extension
    • Terwilliger,T.C. (2003) Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr., D59, 38-44.
    • (2003) Acta Crystallogr , vol.D59 , pp. 38-44
    • Terwilliger, T.C.1
  • 31
    • 0000356656 scopus 로고
    • A graphic model building and refinement system for macromolecules
    • Jones,T.A. (1989) A graphic model building and refinement system for macromolecules. J. Appl. Crystallogr., 11, 268-272.
    • (1989) J. Appl. Crystallogr , vol.11 , pp. 268-272
    • Jones, T.A.1
  • 32
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov,G.N., VaginA,A. and Dodson,E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr., D53, 240-245.
    • (1997) Acta Crystallogr , vol.D53 , pp. 240-245
    • Murshudov, G.N.1    VaginA, A.2    Dodson, E.J.3
  • 33
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereo-chemical quality of protein structures
    • Laskowski,R.A., MacArthur,M.W., Moss,D.S. and Thornton,J.M. (1993) PROCHECK: A program to check the stereo-chemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 35
    • 0013800421 scopus 로고
    • The interaction of a naphthalene dye with apomyoglobin and apohemoglobin. A fluorescent probe of non-polar binding sites
    • Stryer,L. (1965) The interaction of a naphthalene dye with apomyoglobin and apohemoglobin. A fluorescent probe of non-polar binding sites. J. Mol. Biol., 13, 482-495.
    • (1965) J. Mol. Biol , vol.13 , pp. 482-495
    • Stryer, L.1
  • 36
    • 33748605299 scopus 로고    scopus 로고
    • Direct evidence for a glutamate switch necessary for substrate recognition: Crystal structure of lysine ε-aminotransferase (Rv3290c) from Mycobacterium tuberculosis
    • Tripathi,S.M. and Ramachandran,R. (2006) Direct evidence for a glutamate switch necessary for substrate recognition: Crystal structure of lysine ε-aminotransferase (Rv3290c) from Mycobacterium tuberculosis. J. Mol. Biol., 362, 877-886.
    • (2006) J. Mol. Biol , vol.362 , pp. 877-886
    • Tripathi, S.M.1    Ramachandran, R.2
  • 37
    • 0001679473 scopus 로고    scopus 로고
    • Align: A program to superimpose protein coordinates, accounting for insertion and deletion
    • Cohen,G.E. (1997) Align: A program to superimpose protein coordinates, accounting for insertion and deletion. J. Appl. Crystallogr., 30, 1160-1161.
    • (1997) J. Appl. Crystallogr , vol.30 , pp. 1160-1161
    • Cohen, G.E.1
  • 41
    • 0027285868 scopus 로고
    • Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure
    • Wang,Q. and Calvo,J.M. (1993) Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure. EMBO J., 12, 2495-2501.
    • (1993) EMBO J , vol.12 , pp. 2495-2501
    • Wang, Q.1    Calvo, J.M.2
  • 42
    • 0343340048 scopus 로고    scopus 로고
    • Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA
    • Tapias,A., Lopez,G. and Ayora,S. (2000) Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA. Nucleic Acids Res., 28, 552-559.
    • (2000) Nucleic Acids Res , vol.28 , pp. 552-559
    • Tapias, A.1    Lopez, G.2    Ayora, S.3
  • 43
    • 0038136948 scopus 로고    scopus 로고
    • Contribution of DNA conformation and topology in right handed DNA wrapping by the Bacillus subtilis LrpC protein
    • Beloin,C., Jeusset,J., Revet,B., Mirambeau,G., Le Hegarat,F. and Le Cam,E. (2003) Contribution of DNA conformation and topology in right handed DNA wrapping by the Bacillus subtilis LrpC protein. J. Biol. Chem., 278, 5333-5342.
    • (2003) J. Biol. Chem , vol.278 , pp. 5333-5342
    • Beloin, C.1    Jeusset, J.2    Revet, B.3    Mirambeau, G.4    Le Hegarat, F.5    Le Cam, E.6
  • 44
    • 0036041669 scopus 로고    scopus 로고
    • Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers
    • Chen,S. and Calvo,J.M. (2002) Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers. J. Mol. Biol., 318, 1031-1042.
    • (2002) J. Mol. Biol , vol.318 , pp. 1031-1042
    • Chen, S.1    Calvo, J.M.2
  • 45
    • 0036773752 scopus 로고    scopus 로고
    • The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosis
    • Parish,T. and Stoker,N.G. (2002) The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosis. Microbiology, 148, 3069-3077.
    • (2002) Microbiology , vol.148 , pp. 3069-3077
    • Parish, T.1    Stoker, N.G.2
  • 46
    • 33847705622 scopus 로고    scopus 로고
    • Mycobacterial shikimate pathway enzymes as targets for drug design
    • Ducati,R.G., Basso,L.A. and Santos,D.S. (2007) Mycobacterial shikimate pathway enzymes as targets for drug design. Curr. Drug Targets, 8, 423-435.
    • (2007) Curr. Drug Targets , vol.8 , pp. 423-435
    • Ducati, R.G.1    Basso, L.A.2    Santos, D.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.