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Volumn 24, Issue 1, 2008, Pages 10-14

Gaining and losing the thermophilic adaptation in prokaryotes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITION; CORRESPONDENCE ANALYSIS; EVOLUTIONARY ADAPTATION; HORIZONTAL GENE TRANSFER; MESOPHILE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; SHORT SURVEY; THERMOPHILE; THERMOSTABILITY;

EID: 37349101689     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tig.2007.10.005     Document Type: Short Survey
Times cited : (20)

References (25)
  • 1
    • 0035312933 scopus 로고    scopus 로고
    • Identification of thermophilic species by the amino acid compositions deduced from their genomes
    • Kreil D.P., and Ouzounis C.A. Identification of thermophilic species by the amino acid compositions deduced from their genomes. Nucleic Acids Res. 29 (2001) 1608-1615
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1608-1615
    • Kreil, D.P.1    Ouzounis, C.A.2
  • 2
    • 0037019808 scopus 로고    scopus 로고
    • Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis
    • Tekaia F., et al. Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis. Gene 297 (2002) 51-60
    • (2002) Gene , vol.297 , pp. 51-60
    • Tekaia, F.1
  • 3
    • 0242290154 scopus 로고    scopus 로고
    • Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
    • Singer G.A., and Hickey D.A. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content. Gene 317 (2003) 39-47
    • (2003) Gene , vol.317 , pp. 39-47
    • Singer, G.A.1    Hickey, D.A.2
  • 4
    • 19644401538 scopus 로고    scopus 로고
    • Genomic and proteomic adaptations to growth at high temperature
    • Hickey D.A., and Singer G.A. Genomic and proteomic adaptations to growth at high temperature. Genome Biol. 5 (2004) 117
    • (2004) Genome Biol. , vol.5 , pp. 117
    • Hickey, D.A.1    Singer, G.A.2
  • 5
    • 33745819577 scopus 로고    scopus 로고
    • Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes
    • Pasamontes A., and Garcia-Vallve S. Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes. BMC Bioinformatics 7 (2006) 257
    • (2006) BMC Bioinformatics , vol.7 , pp. 257
    • Pasamontes, A.1    Garcia-Vallve, S.2
  • 6
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability
    • Vieille C., and Zeikus G.J. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65 (2001) 1-43
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 7
    • 0037931826 scopus 로고    scopus 로고
    • Genomic correlates of hyperthermostability, an update
    • Suhre K., and Claverie J.M. Genomic correlates of hyperthermostability, an update. J. Biol. Chem. 278 (2003) 17198-17202
    • (2003) J. Biol. Chem. , vol.278 , pp. 17198-17202
    • Suhre, K.1    Claverie, J.M.2
  • 8
    • 12744268746 scopus 로고    scopus 로고
    • Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus
    • Takami H., et al. Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res. 32 (2004) 6292-6303
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6292-6303
    • Takami, H.1
  • 9
    • 33846536849 scopus 로고    scopus 로고
    • Evolution of proteomes: fundamental signatures and global trends in amino acid compositions
    • Tekaia F., and Yeramian E. Evolution of proteomes: fundamental signatures and global trends in amino acid compositions. BMC Genomics 7 (2006) 307
    • (2006) BMC Genomics , vol.7 , pp. 307
    • Tekaia, F.1    Yeramian, E.2
  • 10
    • 33846519263 scopus 로고    scopus 로고
    • Protein and DNA sequence determinants of thermophilic adaptation
    • Zeldovich K.B., et al. Protein and DNA sequence determinants of thermophilic adaptation. PLoS Comput. Biol. 3 (2007) e5
    • (2007) PLoS Comput. Biol. , vol.3
    • Zeldovich, K.B.1
  • 11
    • 0348047627 scopus 로고    scopus 로고
    • Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla
    • Pe'er I., et al. Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla. Proteins 54 (2004) 20-40
    • (2004) Proteins , vol.54 , pp. 20-40
    • Pe'er, I.1
  • 12
    • 34248161913 scopus 로고    scopus 로고
    • Environment specific substitution tables for thermophilic proteins
    • Mizuguchi K., et al. Environment specific substitution tables for thermophilic proteins. BMC Bioinformatics 8 Suppl. 1 (2007) S15
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 1
    • Mizuguchi, K.1
  • 14
    • 32044454841 scopus 로고    scopus 로고
    • Effective factors in thermostability of thermophilic proteins
    • Sadeghi M., et al. Effective factors in thermostability of thermophilic proteins. Biophys. Chem. 119 (2006) 256-270
    • (2006) Biophys. Chem. , vol.119 , pp. 256-270
    • Sadeghi, M.1
  • 15
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • Ciccarelli F.D., et al. Toward automatic reconstruction of a highly resolved tree of life. Science 311 (2006) 1283-1287
    • (2006) Science , vol.311 , pp. 1283-1287
    • Ciccarelli, F.D.1
  • 16
    • 0037118037 scopus 로고    scopus 로고
    • Phylogeny: a non-hyperthermophilic ancestor for bacteria
    • Brochier C., and Philippe H. Phylogeny: a non-hyperthermophilic ancestor for bacteria. Nature 417 (2002) 244
    • (2002) Nature , vol.417 , pp. 244
    • Brochier, C.1    Philippe, H.2
  • 17
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova K.S., et al. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30 (2002) 482-496
    • (2002) Nucleic Acids Res. , vol.30 , pp. 482-496
    • Makarova, K.S.1
  • 18
    • 27744595408 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance
    • Omelchenko M.V., et al. Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance. BMC Evol. Biol. 5 (2005) 57
    • (2005) BMC Evol. Biol. , vol.5 , pp. 57
    • Omelchenko, M.V.1
  • 19
    • 2542451914 scopus 로고    scopus 로고
    • Preferred amino acids and thermostability
    • Farias S.T., and Bonato M.C. Preferred amino acids and thermostability. Genet. Mol. Res. 2 (2003) 383-393
    • (2003) Genet. Mol. Res. , vol.2 , pp. 383-393
    • Farias, S.T.1    Bonato, M.C.2
  • 20
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal gene transfer in bacterial and archaeal complete genomes
    • Garcia-Vallve S., et al. Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res. 10 (2000) 1719-1725
    • (2000) Genome Res. , vol.10 , pp. 1719-1725
    • Garcia-Vallve, S.1
  • 21
    • 0242276676 scopus 로고    scopus 로고
    • Lateral gene transfer and the origins of prokaryotic groups
    • Boucher Y., et al. Lateral gene transfer and the origins of prokaryotic groups. Annu. Rev. Genet. 37 (2003) 283-328
    • (2003) Annu. Rev. Genet. , vol.37 , pp. 283-328
    • Boucher, Y.1
  • 22
    • 33748317821 scopus 로고    scopus 로고
    • Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27
    • Schwarzenlander C., and Averhoff B. Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27. FEBS J. 273 (2006) 4210-4218
    • (2006) FEBS J. , vol.273 , pp. 4210-4218
    • Schwarzenlander, C.1    Averhoff, B.2
  • 23
    • 34250896106 scopus 로고    scopus 로고
    • Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers
    • Brochier-Armanet C., and Forterre P. Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers. Archaea 2 (2006) 83-93
    • (2006) Archaea , vol.2 , pp. 83-93
    • Brochier-Armanet, C.1    Forterre, P.2
  • 24
    • 0037383069 scopus 로고    scopus 로고
    • Potential genomic determinants of hyperthermophily
    • Makarova K.S., et al. Potential genomic determinants of hyperthermophily. Trends Genet. 19 (2003) 172-176
    • (2003) Trends Genet. , vol.19 , pp. 172-176
    • Makarova, K.S.1
  • 25
    • 33745991943 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle
    • Bruggemann H., and Chen C. Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle. J. Biotechnol. 124 (2006) 654-661
    • (2006) J. Biotechnol. , vol.124 , pp. 654-661
    • Bruggemann, H.1    Chen, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.