Translational genomics for bioenergy production: There's room for more than one model [1]

Plant Cell

Volumn 19, Issue 10, 2007, Pages 2971-2973

  Bush, Daniel R ^a   Leach, Jan E ^a  

^a Veterinary Dentistry and Oral Surgery   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 37249076434     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.107.191040     Document Type: Letter

References (23)

1. Dean, R.A., et al. (2005). The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434: 980-986.
2. Gowda, M., Jantasuriyarat, C., Dean, R.A., and Wang, G.L. (2004). Robust-LongSAGE (RL-SAGE): A substantially improved LongSAGE method for gene discovery and transcriptome analysis. Plant Physiol. 134: 890-897.
3. Hirochika, H., Guiderdoni, E., An, G., Hsing, Y.I., Eun, M.Y., Han, C.D., Upadhyaya, N., Ramachandran, S., Zhang, Q., Pereira, A., Sundaresan, V., and Leung, H. (2004). Rice mutant resources for gene discovery. Plant Mol. Biol. 54: 325-334.
4. Holland, N., Holland, D., Helentjaris, T., Dhugga, K.S., Xoconostle-Cazares, B., and Delmer, D.P. (2000). A comparative analysis of the plant cellulose synthase (CesA) gene family. Plant Physiol. 123: 1313-1324.
5. International Rice Genome Sequencing Project (2005). The map-based sequence of the rice genome. Nature 436: 793-800.
6. Kikuchi, S., et al. (2003). Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301: 376-379. Erratum. Science 301: 1849.
7. Komari, T., Hiei, Y., Ishida, Y., Kumashiro, T., and Kubo, T. (1998). Advances in cereal gene transfer. Curr. Opin. Plant Biol. 1: 161-165.
8. Lawrence, C.J., and Walbot, V. (2007). Translational genomics for bioenergy production from fuelstock grasses: maize as the model species. Plant Cell 19: 2091-2094.
9. Lee, B.M., et al. (2005). The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Res. 33: 577-586.
10. Leung, H., McNally, K.L., and Mackill, D. (2007). Rice. In Genetic Variation: A Laboratory Manual, M.P. Weiner, S.B. Gabriel, and J.C. Stephens, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 335-351.
11. Matsumura, H., Nirasawa, S., and Terauchi, R. (1999). Technical advance: Transcript profiling in rice (Oryza sativa L.) seedlings using serial analysis of gene expression (SAGE). Plant J. 20: 719-726.
12. McNally, K.L., Bruskiewich, R., Mackill, D., Buell, C.R., Leach, J.E., and Leung, H. (2006). Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiol. 141: 26-31.
13. Miki, D., and Shimamoto, K. (2004). Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol. 45: 490-495.
14. Nobuta, K., Venu, R.C., Lu, C., Belo, A., Vemaraju, K., Kulkarni, K., Wang, W., Pillay, M., Green, P.J., Wang, G.L., and Meyers, B.C. (2007). An expression atlas of rice mRNAs and small RNAs. Nat. Biotechnol. 25: 473-477.
15. Ochiai, H., Inoue, Y., Takeya, M., Sasaki, A., and Kaku, H. (2005). Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity. Jpn. Agric. Res. Q. 39: 275-287.
16. Somerville, C. (2006). Cellulose synthesis in higher plants. Annu. Rev. Cell Dev. Biol. 22: 53-78.
17. Sticklen, M. (2006). Plant genetic engineering to improve biomass characteristics for biofuels. Curr. Opin. Biotechnol. 17: 315-319.
18. Tanaka, K., Murata, K., Yamazaki, M., Onosato, K., Miyao, A., and Hirochika, H. (2003). Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 133: 73-83.
19. Toki, S., Hara, N., Ono, K., Onodera, H., Tagiri, A., Oka, S., and Tanaka, H. (2006). Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice. Plant J. 47: 969-976.
20. U.S. DOE (2006). Breaking the Biological Barriers to Celluloseic Ethanol: A Joint Research Agenda, DOE/SC-0095 (U.S. Department of Energy Office of Science and Office of Energy Efficiency and Renewable Energy), www.doegenomestolife.org/biofuels/.
21. Wu, J.L., et al. (2005). Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics. Plant Mol. Biol. 59: 85-97.
22. Yu, J., et al. (2005). The genomes of Oryza sativa: A history of duplications. PLoS Biol. 3: e38.
23. Yuan, Q., Ouyang, S., Wang, A., Zhu, W., Maiti, R., Lin, H., Hamilton, J., Haas, B., Sultana, R., Cheung, F., Wortman, J., and Buell, C.R. (2005). The institute for genomic research osa1 rice genome annotation database. Plant Physiol. 138: 18-26.