Metallic barcodes for multiplexed bioassays

Nanomedicine

Volumn 2, Issue 5, 2007, Pages 695-710

  Brunker, Sarah E ^a   Cederquist, Kristin B ^a   Keating, Christine D ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Barcoded nanowires; Bioconjugate; Biosensors; Cancer detection; Encoded particles; Fluorescence; Nanotechnology

Indexed keywords

ALUMINUM; COBALT; FLUORESCEIN ISOTHIOCYANATE; FLUORESCENT DYE; GENOMIC DNA; GOLD; METAL; NANOWIRE; NICKEL; POLYMER; SILVER; VIRUS RNA;

ANTIGEN BINDING; BACTERIOPHAGE; BINDING AFFINITY; BIOASSAY; CANCER DIAGNOSIS; COLONY FORMING UNIT; CONTRAST ENHANCEMENT; DIAGNOSTIC ACCURACY; DNA PROBE; DNA SEQUENCE; EARLY DIAGNOSIS; FEASIBILITY STUDY; FLOW CYTOMETRY; FLUORESCENCE ANALYSIS; GENE FREQUENCY; GENOME ANALYSIS; GENOTYPE; HEPATITIS C VIRUS; HUMAN IMMUNODEFICIENCY VIRUS; IMAGE QUALITY; INTERMETHOD COMPARISON; MOLECULAR IMAGING; NANOTECHNOLOGY; NONHUMAN; NUCLEIC ACID ANALYSIS; PARTICLE SIZE; PHOTOLITHOTROPH; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; RNA SEQUENCE; SARS CORONAVIRUS; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM;

BIOLOGICAL ASSAY; GENE EXPRESSION PROFILING; IMMUNOASSAY; METALS; NANOSTRUCTURES; NANOTECHNOLOGY;

EID: 37249068477     PISSN: 17435889     EISSN: None     Source Type: Journal    
DOI: 10.2217/17435889.2.5.695     Document Type: Review

References (60)

1. Etzioni R, Urban N, Ramsey S et al.: The. case for early detection. Nat. Rev. Cancer 3(4), 243-252 (2003).
2. Wulfkuhle JD, Liotta LA, Petricoin EF: Proteomic applications for the early detection of cancer. Nat. Rev. Cancer 3(4). 267-275 (2003).
3. Sidransky D: Emerging molecular markers of cancer. Nat. Rev. Cancer 2(3), 210-219 (2002).
4. Bidart J-M, Thuillier F, Augereau C et al.: Kinetics of serum tumor marker concentrations and usefulness in clinical monitoring. Clin. Chem. 45(10), 1695-1707 (1999).
5. Eyre HJ, Lange DP, Morris LB: Diagnostic Tests, In: Informed Decisions (2nd Edition). The Complete Book of Cancer Diagnostics Treatment, and Recovery. Sproull A (Ed.). American Cancer Society - Health Care Products, Atlanta, GA, USA 76-94 (2002).
6. Zheng G, Patolsky F, Cui Y, Wang WU, Lieber CM: Multiplexed electrical detection of cancer markers with nanowire sensor arrays. Nat. Biotechnol. 23(10), 1294-1301 (2005)
7. Nicewarner-Pena SR, Freeman RG, Reiss BD et al.: Submicrometer metallic barcodes. Science 294(5540), 137-141 (2001).
8. Rosi NL, Mirkin CA: Nanostructures in biodiagnostics. Chem. Rev. 105(4), 1547-1562 (2005).
9. Patolsky F, Zheng G, Lieber CM: Nanowire sensors for medicine and the life sciences. Nanomed. 1(1), 51-65 (2006).
10. Penn SG. He L, Natan MJ: Nanoparticles for bioanalysis. Curr. Opin. Chem. Biol. 7(5), 609-615 (2003).
11. Nam J-M, Thaxton CS, Mirkin CA: Nanoparticle-based bio-bar codes for the ultrasensitive detection of proteins. Science 301(5641). 1884-1886 (2003).
12. Cui Y, Wei Q, Park H, Lieber CM: Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species. Seience 293(5533), 1289-1292 (2001).
13. Gao X, Cui Y, Levenson RM, Chung LWK, Nie S: In vivo cancer targeting and imaging with semiconductor quantum dots. Nat. Biotechnol. 22(8), 969-976 (2004).
14. Wu X, Liu H, Liu J et al.: Immunofluorescent labeling of cancer marker Her2 and other cellular targets with semiconductor quantum dots. Nat. Biotechnol. 21(1), 41-46 (2003).
15. Fritz J. Baller MK, Lang HP et al.: Translating biomolecular recognition into nanomechanics. Science 288(5464), 316-318 (2000).
16. Zhang X, Shah NC, Van Duyne RP: Sensitive and selective chem/bio sensing based on surface-enhanced Raman spectroscopy (SERS). Vib. Spetimsc. 42(1), 2-8 (2006).
17. Zhao J, Zhang X, Yonzon CR, Haes Aj, Van Duyne RP: Localized surface plasmon resonance biosensors. Nanomed. 1(2), 219-228 (2006).
18. Ilic Y, Yang Y, Aubin K, Reichenbach R, Krylov S, Craighead HG: Enumeration of DNA molecules bound to a nanomechanical oscillator. Nano Lett. 5(5), 925-929 (2005).
19. Ferrari M: Cancer nanotechnology: opportunities and challenges. Nat. Rev. Cancer 5(3), 161-171 (2005).
20. Stoeva SI, Lee J-S, Smith JE, Rosen ST, Mirkin CA: Multiplexed detection of protein cancer markers with biobarcoded nanoparticle probes. J. Am. Chem. Soc. 128(26), 8378-8379 (2006).
21. Nolan JP, Sklar LA: Suspension array technology: evolution of the flat-array paradigm. Trends Biotechnol. 20(1), 9-12 (2002).
22. DNA Microarrays A Practical Approach. Schena M (Ed.). Oxford University Press Inc., New York, USA (1999).
23. Microarray Biochip Technology. Schena M (Ed.). A Biotechniques Books Publication Eaton Publishing, Natick, MA, USA (2000).
24. Pregibon DC, Toner M, Doyle PS: Multifunctional encoded particles for high-throughput biomolecule analysis. Science 315(5817), 1393-1396 (2007).
25. Kellar KL, lannone MA: Multiplexed microsphere-based flow cytometric assays. Exp. Hernatol. 30(11), 1227-1237 (2002).
26. Dejneka MJ, Streltsov A, Pal S et al.: Rare earth-doped glass microbarcodes. Proc. Natl Acad, Sci. USA 100(2), 389-393 (2003).
27. He B, Son SJ, Lee SB: Shape-coded silica nanotubes for biosensing. Langmuir 22 (20), 8263-8265 (2006).
28. Hernandez CJ, Mason TG: Colloidal alphabet soup: monodisperse dispersions of shape-designed LithoParticles. J. Phys. Chem. C 111(12), 4477-4480 (2007).
29. Battersby BJ, Bryant D, Meutermans W, Matthews D, Smythe ML, Trau M: Toward larger chemical libraries: encoding with fluorescent colloids in combinatorial chemistry. J. Am. Chem. Soc. 122(9), 2138-2139 (2000).
30. Han M, Gao X, Su JZ, Nie S: Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules. Nat. Biotechnol. 19(7), 631-635 (2001).
31. Braeckmans K. De Smedt SC, Roelant C et al.: Encoding microcarriers by spatial selective photobleaching. Nat. Mater. 2(3), 169-173 (2003).
32. Zhi Z, Morita Y, Hasan Q, Tamiya E: Micromachining microcarrier-based biomolecular encoding for miniaturized and multiplexed immunoassay. Anal Chem. 75(16). 4125-4131 (2003).
33. Eastman PS, Ruan W, Doctolero M et al.: Qclot nanobarcodes for multiplexed gene expression analysis. Nano Lett. 6(5), 1059-1064 (2006).
34. Nicewarner-Peña SR, Carado AJ Shale KE, Keating CD: Barcoded metal nanowires: optical reflectivity and patterned fluorescence. J. Phys. Chem. B 107(30), 7360-7367 (2003).
35. Reiss BD, Freeman RG, Walton ID et al.: Electrochemical synthesis and optical readout of striped metal rods with submicron features. J. EJectroanal. Chem. 522(1), 95-103 (2002).
36. Walton ID, Norton SM, Balasingham A et al.: Particles for multiplexed analysis in solution: detection and identification of striped metallic particles using optical microscopy. Anal Chem. 74(10), 2240-2247 (2002).
37. True RJ, Taylor MK, Chakarova GS, Walton ID: Microfabricated templates for the electrodeposition of metallic barcodes for use in multiplexed bioassays. Proceedings of the 26th Annual Conference of the IEEE EMBS. San Francisco, USA (2004).
38. Matthias S, Schilling I Nielsch K, Müller F, Wehrspohn RB, Gösele U: Monodisperse diameter-modulated gold microwires. Adv. Mater. 14(22), 1618-1621 (2002).
39. Sloss JA, Keating CD: Batch preparation of linear Au and Ag nanoparticle chains via wet chemistry. Nano Lett. 5(9), 1779-1783 (2005).
40. Martin CR: Membrane-based synthesis of nanomaterials. Chem. Mater. 8(8), 1739-1746 (1996).
41. Martin CR: Nanomaterials: a membrane-based synthetic approach. Science 266(5193), 1961-1966 (1994).
42. Al-Mawlawi D, Liu CZ, Moskovits J: Nanowires formed in anodic oxide nanotemplates. J. Mater. Res. 9(4), 1014-1018 (1994).
43. Martin BR, Dermody DJ, Reiss BD et al.: Orthogonal self-assembly on colloidal gold-platinum nanorods. Adv. Mater. 11(12), 1021-1025 (1999).
44. Kline TR, Tian M, Wang J, Sen A, Chan MWH, Mallouk TE: Template-grown metal nanowires. Inorg. Chem. 45(19). 7555-7565 (2006).
45. Keating CD, Natan MJ: Striped metal nanowires as building blocks and optical tags. Adv Mater. 15(5), 451-454 (2003).
46. Stoermer RL, Keating CD: Distance-dependent emission from dye-labeled oligonucleotides on striped Au/Ag nanowires: effect of secondary structure and hybridization efficiency. J. Am. Chem. Soc. 128(40), 13243-13254 (2006).
47. Tok JBH, Chuang FYS, Kao MC et al.: Metallic striped nanowires as multiplexed immunoassay platforms for pathogen detection. Angew. Chem. Int. Ed. Engl. 45(41), 6900-6904 (2006).
48. Stoermer RL, Sioss JA, Keating CD: Stabilization of silver metal in citrate buffer: barcoded nanowires and their bioconjugates. Chem. Mater. 17(9), 4356-4361 (2005).
49. Wildt B. Mali P. Searson PC: Electrochemical template synthesis of multisegment nanowires: fabrication and protein functionatization. Langmuir 22(25). 10528-10534 (2006).
50. Sioss JA, Stoermer RL, Sha MY, Keating CD: Silica coated, Au/Ag striped nanowires for bioanalysis. Langmuir (2007) (In Press).
51. Tanase M, Bauer LA, Huitgren A et al.: Magnetic alignment of fluorescent nanowires. Nano Lett. 1(3), 155-158 (2001).
52. Lee K-B, Park S, Mirkin CA: Multicomponent magnetic nanorods for biomolecular separations. Angew. Chem. Int. Ed. Engl. 43(23), 3048-3050 (2004).
53. Sha MY, Walton ID, Norton SM et al.: Multiplexed SNP genotyping using nanobarcode particle technology. Anal. Bioanal. Chem. 384(3), 658-666 (2006).
54. Sha MY, Yamanaka M, Walton ID et al.: Encoded metal nanoparticle-based molecular beacons for multiplexed detection of DNA. Nanobiotecbnol. 1(4), 327-336 (2005).
55. Stoermer RL, Cederquist KB, McFarland SK, Sha MY, Penn SC, Keating CD: Coupling molecular beacons to barcoded metal nanowires for multiplexed, sealed chamber DNA bioassays. J. Am. Chem. Soc. 128(51). 16892-16903 (2006).
56. Andreadis JD, Chrisey LA: Use of immobilized PCR primers to generate covalently immobilized DNAs for in vitro transcription/translation reactions. Nucleic Acids Res. 28(2), e5 (2000).
57. Nicewarner-Peña SR, Raina S, Goodrich GF, Fedoroff NV, Keating CD: Hybridization and enzymatic extension of Au nanoparticle-bound oligonucleotides. J. Am. Cbem. Soc. 124(24), 7314-7323 (2002).
58. Stoermer RL, Keating CD: DNA-directed assembly of barcoded nanowires onto glass slides for biosensing applications. Proceedings of SPIE. Bellingham, WA, USA, 5588 (2004).
59. Dillenback LM, Goodrich GP Keating CD: Temperature-programmed assembly of DNA: Au nanoparticle bioconjugates. Nano Lett. 6(1), 16-23 (2006).
60. Jin R, Wu G, Li Z, Mirkin CA, Schatz GC: What controls the melting properties of DNA-linked gold nanoparticle assemblies? J. Am. Chem. Soc. 125(6), 1643-1654 (2003).