Electric field-induced translocation of single-stranded DNA through a polarized carbon nanotube membrane

Journal of Chemical Physics

Volumn 127, Issue 22, 2007, Pages

  Xie, Yinghong ^a   Kong, Yong ^b   Soh, A K ^a   Gao, Huajian ^c  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

^b MAX PLANCK INSTITUTE FOR INTELLIGENT SYSTEMS   (Germany)

^c Brown University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON NANOTUBES; ELECTRIC FIELDS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS;

BIONANOSYSTEMS; ELECTRIC FIELD STRENGTH; TRANSLOCATION RATE; TRANSLOCATION VELOCITY;

DNA;

CARBON NANOTUBE; DNA;

ARTICLE; ARTIFICIAL MEMBRANE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; ELECTRICITY; ELECTROMAGNETIC FIELD; ELECTROPORATION; METHODOLOGY; MOTION; RADIATION EXPOSURE; ULTRASTRUCTURE;

COMPUTER SIMULATION; DNA; ELECTROMAGNETIC FIELDS; ELECTROPORATION; ELECTROSTATICS; MEMBRANES, ARTIFICIAL; MODELS, CHEMICAL; MODELS, MOLECULAR; MOTION; NANOTUBES, CARBON;

EID: 37149051203     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2799989     Document Type: Article

References (34)

1. E. L. Florin, V. T. Moy, and H. E. Gaub, Science 264, 415 (1994).
2. M. L. Bennink, S. H. Leuba, G. H. Leno, J. Zlatanova, and B. G. de Grooth, Nat. Struct. Biol. 8, 606 (2001).
3. D. E. Smith, H. P. Babcock, and S. Chu, Science 283, 1724 (1999).
4. N. Kaji, M. Ueda, and Y. Baba, Biophys. J. 82, 335 (2002).
5. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell (Garland, New York, 1994).
6. D. C. Chang, Guide to Electroporation and Electrofusion (Academic, New York, 1992).
7. J. J. Kasianowicz, E. Brandin, D. Branton, and D. Deamer, Proc. Natl. Acad. Sci. U.S.A. 93, 13770 (1996).
8. A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. 86, 3435 (2001).
9. H. C. Loebl, R. Randel, S. P. Goodwin, and C. C. Matthai, Phys. Rev. E 67, 041913 (2003).
10. E. Slonkina and A. B. Kolomeisky, J. Chem. Phys. 118, 7112 (2003).
11. J. B. Heng, A. Aksimentiev, C. Ho, P. Marks, Y. V. Grinkova, S. Sligar, K. Schulten, and G. Timp, Nano Lett. 5, 1883 (2005).
12. A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J. F. Joanny, and C. Dekker, Nano Lett. 5, 1193 (2005).
13. M. S. Dresselhaus, G. Dresselhaus, and P. Avouris, Top. Appl. Phys. 80, 287 (2001).
14. A. Kalra, S. Garde, and G. Hummer, Proc. Natl. Acad. Sci. U.S.A. 100, 10175 (2003).
15. D. J. Mann and M. D. Halls, Phys. Rev. Lett. 90, 195503 (2003).
16. S. Joseph, R. J. Mashl, E. Jakobsson, and N. R. Aluru, Nano Lett. 3, 1399 (2003).
17. H. Gao, Y. Kong, D. Cui, and C. S. Ozkan, Nano Lett. 3, 471 (2003).
18. I. C. Yeh and G. Hummer, Proc. Natl. Acad. Sci. U.S.A. 101, 12177 (2004).
19. M. S. Dresselhaus, G. Dresselhaus, and P. C. Eklund, Science of Fullerenes and Carbon Nanotubes (Academic, San Diego, CA, 1996).
20. Y. H. Xie, Y. Kong, H. Gao, and A. K. Soh, " Molecular dynamics simulation of polarizable carbon nanotubes., " Comput. Mater. Sci. 40, 460 (2007).
21. L. X. Benedict, S. G. Louie, and M. L. Cohen, Phys. Rev. B 52, 8541 (1995).
22. R. Langlet, M. Devel, and Ph. Lambin, Carbon 44, 2883 (2006).
23. A. Meller, J. Phys.: Condens. Matter 15, R581 (2003).
24. D. van der Spoel, E. Lindahl, B. Hess, A. R. van Buuren, E. Apol, P. J. Meulenhoff, D. P. Tieleman, A. L. T. M. Sijbers, K. A. Feenstra, R. van Drunen, and H. J. C. Berendsen, Gromacs User Manual University of Groningen, Nijenborgh, 4, 9747, AG Groningen, The Netherlands (2002).
25. O. Teleman, B. Jonsson, and S. Engstrom, Mol. Phys. 60, 193 (1987).
26. T. Darden, D. York, and L. Pedersen, J. Chem. Phys. 98, 10089 (1993).
27. B. Hess, H. Bekker, H. J. C. Berendsenk, and J. G. E. M. Fraaije, J. Comput. Chem. 18, 1463 (1997).
28. H. Bekker, J. P. van den Berg, and T. A. Wassenaar, J. Comput. Chem. 25, 1037 (2004).
29. W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics 14, 33 (1996).
30. A. Aksimentiev, J. B. Heng, G. Timp, and K. Schulten, Biophys. J. 87, 2086 (2004).
31. J. B. Heng, A. Aksimentiev, C. Ho, P. Marks, Y. V. Grinkova, S. Sligar, K. Schulten, and G. Timp, Biophys. J. 90, 1098 (2006).
32. U. Keyser, B. N. Koeleman, S. V. Dorp, D. Krapf, R. M. M. Smeets, S. G. Lemay, N. H. Dekker, and C. Dekker, Nat. Phys. 2, 473 (2006).
33. R. S. Conroy and C. Danilowicz, Contemp. Phys. 45, 277 (2004).
34. D. Lu, Y. Li, U. Ravaioli, and K. Schulten, J. Phys. Chem. B 109, 11461 (2005).