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Volumn 23, Issue 24, 2007, Pages 3280-3288

Detecting high-order interactions of single nucleotide polymorphisms using genetic programming

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BREAST CANCER; CANCER RISK; COMPUTER PROGRAM; GENE IDENTIFICATION; GENE INTERACTION; GENETIC ASSOCIATION; GENOME ANALYSIS; GENOTYPE; GENOTYPE ENVIRONMENT INTERACTION; HAPLOTYPE MAP; HIGH RISK PATIENT; PRIORITY JOURNAL; RISK ASSESSMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 36949021059     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm522     Document Type: Article
Times cited : (47)

References (31)
  • 1
    • 34147179079 scopus 로고    scopus 로고
    • BRLMM: An improved genotype calling method for the GeneChip Human Mapping 500k array set
    • Technical report. Affymetrix, Santa Clara, CA
    • Affymetrix (2006) BRLMM: An improved genotype calling method for the GeneChip Human Mapping 500k array set. Technical report. Affymetrix, Santa Clara, CA.
    • (2006)
    • Affymetrix1
  • 3
    • 36949012822 scopus 로고    scopus 로고
    • Multiple testing for SNP-SNP interactions: A flexible asymptotic framework
    • Technical report, Sylvia Lawry Centre. Munich, Germany
    • Boulesteix,A.L. et al. (2007) Multiple testing for SNP-SNP interactions: A flexible asymptotic framework. Technical report, Sylvia Lawry Centre. Munich, Germany.
    • (2007)
    • Boulesteix, A.L.1
  • 5
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • Breiman,L. (1996) Bagging predictors. Mach. Learn., 26, 123-140.
    • (1996) Mach. Learn , vol.26 , pp. 123-140
    • Breiman, L.1
  • 6
    • 0035478854 scopus 로고    scopus 로고
    • Random Forests
    • Breiman,L. (2001) Random Forests. Mach. Learn., 45, 5-32.
    • (2001) Mach. Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 7
    • 36949010864 scopus 로고    scopus 로고
    • Breiman,L., Friedman,J.H., Olshen,R.A. and Stone,C.J. (1984) Classification and Regression Trees. Wadsworth, Belmont, C.A.
    • Breiman,L., Friedman,J.H., Olshen,R.A. and Stone,C.J. (1984) Classification and Regression Trees. Wadsworth, Belmont, C.A.
  • 10
    • 0036155238 scopus 로고    scopus 로고
    • A perspective on epistasis: Limits of models displaying no main effect
    • Culverhouse,R. et al. (2002) A perspective on epistasis: Limits of models displaying no main effect. Am. J. Hum. Genet., 70, 461-471.
    • (2002) Am. J. Hum. Genet , vol.70 , pp. 461-471
    • Culverhouse, R.1
  • 11
    • 0035660275 scopus 로고    scopus 로고
    • Metabolic susceptibility genes as cancer risk factors: Time for a reassessment?
    • Garte,S. (2001) Metabolic susceptibility genes as cancer risk factors: time for a reassessment? Cancer Epidemiol. Biomarkers Prev., 10 1233-1237.
    • (2001) Cancer Epidemiol. Biomarkers Prev , vol.10 , pp. 1233-1237
    • Garte, S.1
  • 12
    • 33644854273 scopus 로고    scopus 로고
    • Exploring SNP-SNP interactions and colon cancer risk using polymorphism interaction analysis
    • Goodman,J.E. et al. (2006) Exploring SNP-SNP interactions and colon cancer risk using polymorphism interaction analysis. Int. J. Cancer, 118, 1790-1797.
    • (2006) Int. J. Cancer , vol.118 , pp. 1790-1797
    • Goodman, J.E.1
  • 13
    • 33745079199 scopus 로고    scopus 로고
    • The challenge for genetic epidemiologists: How to analyze large numbers of SNPs in relation to complex diseases
    • Heidema,G.A. et al. (2006) The challenge for genetic epidemiologists: How to analyze large numbers of SNPs in relation to complex diseases. Biomed. Genet., 7.
    • (2006) Biomed. Genet , vol.7
    • Heidema, G.A.1
  • 14
    • 0042881041 scopus 로고    scopus 로고
    • Mathematical multi-locus approaches to localizing complex human trait genes
    • Hoh,J. and Ott,J. (2003) Mathematical multi-locus approaches to localizing complex human trait genes. Nat. Rev. Genet., 4, 701-709.
    • (2003) Nat. Rev. Genet , vol.4 , pp. 701-709
    • Hoh, J.1    Ott, J.2
  • 15
    • 19944429354 scopus 로고    scopus 로고
    • ERCC2 genotypes and a corresponding haplotype are linked with breast cancer risk in a German population
    • Justenhoven,C. et al. (2004) ERCC2 genotypes and a corresponding haplotype are linked with breast cancer risk in a German population. Cancer Epidemiol. Biomarkers Prev., 13, 2059-2064.
    • (2004) Cancer Epidemiol. Biomarkers Prev , vol.13 , pp. 2059-2064
    • Justenhoven, C.1
  • 16
    • 12744269194 scopus 로고    scopus 로고
    • Identifying interacting SNPs using Monte Carlo logic regression
    • Kooperberg,C. and Ruczinski,I. (2005) Identifying interacting SNPs using Monte Carlo logic regression. Genet. Epidemiol., 28, 157-170.
    • (2005) Genet. Epidemiol , vol.28 , pp. 157-170
    • Kooperberg, C.1    Ruczinski, I.2
  • 17
    • 0034796896 scopus 로고    scopus 로고
    • Sequence analysis using logic regression
    • Kooperberg,C. et al. (2001) Sequence analysis using logic regression. Genet, Epidemiol., 21, 626-631.
    • (2001) Genet, Epidemiol , vol.21 , pp. 626-631
    • Kooperberg, C.1
  • 19
    • 25444453244 scopus 로고    scopus 로고
    • Screening large-scale association study data: Exploiting interactions using random forests
    • Lunetta,K. L., Hayward,L. B., Segal,J. and van Eerdewegh,P. (2004) Screening large-scale association study data: Exploiting interactions using random forests. BMC Genet, 10.
    • (2004) BMC Genet , vol.10
    • Lunetta, K.L.1    Hayward, L.B.2    Segal, J.3    van Eerdewegh, P.4
  • 20
    • 16844366786 scopus 로고    scopus 로고
    • Genome-wide strategies for detecting multiple loci that influence complex diseases
    • Marchini,J. et al. (2005) Genome-wide strategies for detecting multiple loci that influence complex diseases. Nat. Genet., 37 413-416.
    • (2005) Nat. Genet , vol.37 , pp. 413-416
    • Marchini, J.1
  • 21
    • 8144225291 scopus 로고    scopus 로고
    • Association studies for finding cancer-susceptibility genetic variants
    • Pharoah,P.D. et al. (2004) Association studies for finding cancer-susceptibility genetic variants. Nat. Rev. Cancer, 4, 850-860.
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 850-860
    • Pharoah, P.D.1
  • 22
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie,M.D. et al. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet., 69, 138-147.
    • (2001) Am. J. Hum. Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1
  • 24
    • 12744255343 scopus 로고    scopus 로고
    • Exploring interactions in high-dimensional genomic data: An overview of logic regression, with applications
    • Ruczinski,I. et al. (2004) Exploring interactions in high-dimensional genomic data: An overview of logic regression, with applications. J. Mult. Anal., 90, 178-195.
    • (2004) J. Mult. Anal , vol.90 , pp. 178-195
    • Ruczinski, I.1
  • 25
    • 84879533131 scopus 로고    scopus 로고
    • Modifying microarray analysis methods for categorical data - SAM and PAM for SNPs
    • Weihs,C. and Gaul,W, eds, Springer, Heidelberg, pp
    • Schwender,H. (2005) Modifying microarray analysis methods for categorical data - SAM and PAM for SNPs. Weihs,C. and Gaul,W. (eds.) Classiftation - The Ubiquitous Challenge. Springer, Heidelberg, pp. 370-377.
    • (2005) Classiftation - The Ubiquitous Challenge , pp. 370-377
    • Schwender, H.1
  • 26
    • 36949034381 scopus 로고    scopus 로고
    • Schwender,H. (2007) Statistical analysis of genotype and gene expression data. Ph.D. Thesis. Department of Statistics, University of Dortmund, Germany.
    • Schwender,H. (2007) Statistical analysis of genotype and gene expression data. Ph.D. Thesis. Department of Statistics, University of Dortmund, Germany.
  • 27
    • 37249085147 scopus 로고    scopus 로고
    • Identification of SNP interactions using logic regression
    • doi:10.1093/biostatistics/ kxm024
    • Schwender,H. and Ickstadt,K. (2007) Identification of SNP interactions using logic regression. Biostatistics, doi:10.1093/biostatistics/ kxm024.
    • (2007) Biostatistics
    • Schwender, H.1    Ickstadt, K.2
  • 28
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction
    • Stephens,M. and Donelly,P. (2003) A comparison of Bayesian methods for haplotype reconstruction. Am. J. Hum. Genet., 73, 1162-1169.
    • (2003) Am. J. Hum. Genet , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donelly, P.2
  • 29
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Consortium
    • The International HapMap Consortium (2003) The International HapMap Project. Nature, 426, 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 30
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher,V. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5124.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 5116-5124
    • Tusher, V.1
  • 31
    • 0034796714 scopus 로고    scopus 로고
    • Introduction: Analysis of sequence data and population structure
    • Witte,J.S. and Fijal,B.A. (2001) Introduction: Analysis of sequence data and population structure. Genet. Epidemiol., 21, 600-601.
    • (2001) Genet. Epidemiol , vol.21 , pp. 600-601
    • Witte, J.S.1    Fijal, B.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.