Fast ℓ1 minimization for genomewide analysis of mRNA lengths

2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006

Volumn , Issue , 2006, Pages 19-20

  Drori, Iddo ^a   Stodden, Victoria C ^a   Hurowitz, Evan H ^b  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION METHODS; BOOTSTRAP SIMULATIONS; GENERAL-PURPOSE SOLVERS; GENOMIC SIGNAL PROCESSING; INTERNATIONAL (CO); NON NEGATIVE SOLUTIONS; ORDERS-OF-MAGNITUDE; PROCESSING TIME; RNA TRANSCRIPTS; SYSTEM OF EQUATIONS;

NUCLEIC ACIDS; RNA; SIGNAL PROCESSING; VIRTUAL REALITY;

RISK ASSESSMENT;

EID: 36949014627     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/GENSIPS.2006.353135     Document Type: Conference Paper

References (9)

1. Evan H. Hurowitz, Iddo Drori, Victoria C. Stodden, David L. Donoho, and Patrick O. Brown, "Virtual northern analysis of the human genome," In progress.
2. David L. Wheeler, Deanna M. Church, and Ron Edgar et al., "Database resources of the national center for biotechnology information: update," Nucleic Acids Res., vol. 32, pp. 35-40, 2004.
3. Tadashi Imanishi, Takeshi Itoh, and Yutaka Suzuki et al., "Integrative annotation of 21,037 human genes validated by full-length cDNA clones," PLOS Biology, vol. 2, pp. 1-20, 2004.
4. Evan H. Hurowitz and Patrick O. Brown, "Genome-wide analysis of mRNA lengths in saccharomyces cerevisiae," Genome Biology, vol. 5, no. 1, pp. 1-14, 2003.
5. Michael A. Saunders and Byunggyoo Kim, "PDCO: Primal-dual interior method for convex objectives," http://www.stanford.edu/group/SOL/software/ pdco.html.
6. 1-norm near-solution approximates the sparsest near-solution," Comm. Pure and Appl. Math., 2004.
7. David L. Donoho and Jared Tanner, "Sparse nonnegative solutions of underdetermined linear equations by linear programming," Proc. Natl. Acad. Sci. USA, vol. 102, pp. 9446-9451, 2005.
8. David L. Donoho, Miki Elad, and Vladimir N. Temlyakov, "Stable recovery of sparse overcomplete representations in the presence of noise," IEEE Trans. on Information Theory, vol. 52, no. 1, pp. 6-18, 2006.
9. David L. Donoho, Iddo Drori, Victoria C. Stodden, and Yaakov Tsaig, "Sparselab web site," http://wwwstat.stanford.edu/~sparselab/.