CID: A rapid and efficient bioinformatic tool for the detection of SSRs from genomic libraries

Molecular Ecology Resources

Volumn 8, Issue 1, 2008, Pages 107-108

  Freitas, Patrícia D ^a   Martins, Diogo S ^a   Galetti Jr , Pedro M ^a  

^a FEDERAL UNIVERSITY OF SÃO CARLOS   (Brazil)

Author keywords

Flanking primers; Microsatellites; Web based tool

Indexed keywords

EID: 36849075723     PISSN: 1755098X     EISSN: 14718286     Source Type: Journal    
DOI: 10.1111/j.1471-8286.2007.01950.x     Document Type: Article

References (7)

1. Ewing B, Hillier LD, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Research, 8, 175 185.
2. Green P (1998) crossmatch website documentation. Phred, Phrap and Consed. Genome Center, University of Washington, Washington, D.C.
3. Heineman GT, Councill WT (2001) Component-Based Software Engineering: Putting the Pieces Together, 1st edn. Addison-Wesley Professional, Boston, Massachusetts.
4. Mahalakshmi V, Aparna P, Ramadevi IS, Ortiz R (2002) Genomic sequence derived simple sequence repeats markers. A case study with Medicago spp. Electronic Journal of Biotechnology, 5, 233 242.
5. Prati RC, Monard MC Carvalho ACPLF (2004) Looking for exceptions on knowledge rules induced from HIV cleavage data set. Genetic and Molecular Biology, 27, 637 643.
6. Rozen S, Skaletsky HJ (2000) primer 3 on the WWW for general users and for biologist programmers. In : Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds Krawetz S, Misener S pp. 365 386. Humana Press, Totowa, New Jersey.
7. Thiel T (2001) misa - Microsatellite Identification Tool, Version 1.0. http://pgrc.ipk-gatersleben.de/misa/misa.html.