A kinetic analysis of DNA ejection from tailed phages revealing the prerequisite activation energy

Biophysical Journal

Volumn 93, Issue 11, 2007, Pages 3999-4005

  Raspaud, Eric ^a   Forth, Thomas ^a   São José, Carlos ^b   Tavares, Paulo ^c   De Frutos, Marta ^a  

^a UNIVERSITÉ PARIS SUD   (France)

^b UNIVERSITY OF LISBON   (Portugal)

^c INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BACTERIOPHAGE; CONTROLLED STUDY; ENERGY; GENE TARGETING; KINETICS; LIGHT SCATTERING; NONHUMAN; TEMPERATURE; VIRUS;

BACTERIA (MICROORGANISMS); CAUDOVIRALES; MIRIDAE; PODOVIRIDAE; SIPHOVIRIDAE;

EID: 36849062085     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.111435     Document Type: Article

References (27)

1. Ackermann, H. W. 2007. 5500 Phages examined in the electron microscope. Arch. Virol. 152:227-243.
2. Kindt, J., S. Tzlil, A. Ben-Shaul, and W. M. Gelbart. 2001. DNA packaging and ejection forces in bacteriophage. Proc. Natl. Acad. Sci. USA. 98:13671-13674.
3. Evilevitch, A., L. Lavelle, C. M. Knobler, E. Raspaud, and W. M. Gelbart. 2003. Osmotic pressure inhibition of DNA ejection from phage. Proc. Natl. Acad. Sci. USA. 100:9292-9295.
4. Smith, D. E., S. J. Tans, S. B. Smith, S. Grimes, D. L. Anderson, and C. Bustamante. 2001. The bacteriophage phi 29 portal motor can package DNA against a large internal force. Nature. 413:748-752.
5. Molineux, I. J. 2006. Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it? Virology. 344:221-229.
6. Vinga, I., C. São-José, P. Tavares, and M. A. Santos. 2006. Bacteriophage entry in the host cell. In Modern Bacteriophage Biology and Biotechnology. G. Wegrzyn, editor. Research Signpost, Kerala, India. 165-205.
7. Sao-Jose, C., S. Lhuillier, R. Lurz, R. Melki, J. Lepault, M. A. Santos, and P. Tavares. 2006. The ectodomain of the viral receptor YueB forms a fiber that triggers ejection of bacteriophage SPP1 DNA. J. Biol. Chem. 281:11464-11470.
8. Roa, M. 1981. Receptor-triggered ejection of DNA and protein in phage-lambda. FEMS Microbiol. Lett. 11:257-262.
9. de Frutos, M., L. Letellier, and E. Raspaud. 2005. DNA ejection from bacteriophage T5: analysis of the kinetics and energetics. Biophys. J. 88:1364-1370.
10. Löf, D., K. Schillén, B. Jönsson, and A. Evilevitch. 2007. Forces controlling the role of DNA ejection from phage lambda. J. Mol. Biol. 368:55-65.
11. Tavares, P., R. Lurz, A. Stiege, B. Ruckert, and T. A. Trautner. 1996. Sequential headful packaging and fate of the cleaved DNA ends in bacteriophage SPP1. J. Mol. Biol. 264:954-967.
12. Graff, A., M. Sauer, P. Van Gelder, and W. Meier. 2002. Virus-assisted loading of polymer nanocontainer. Proc. Natl. Acad. Sci. USA. 99:5064-5068.
13. Mangenot, S., M. Hochrein, J. Radler, and L. Letellier. 2005. Real-time imaging of DNA ejection from single phage particles. Curr. Biol. 15:430-435.
14. McAllister, W. T. 1970. Bacteriophage infection: which end of the SP82 G genome goes in first? J. Virol. 5:194-198
15. Lanni, Y. T. 1968. First step-transfer deoxyribonucleic acid of bacteriophage TS. Bacteriol. Rev. 32:227-242.
16. Agirrezabala, X., J. Martin-Benito, M. Valle, J. M. Gonzalez, A. Valencia, J. M. Valpuesta, and J. L. Carrascosa. 2005. Structure of the connector of bacteriophage T7 at 8 angstrom resolution: structural homologies of a basic component of a DNA translocating machinery. J. Mol. Biol. 347:895-902.
17. Xiang, Y., M. C. Morais, A. J. Battisti, S. Grimes, P. J. Jardine, D. L. Anderson, and M. G. Rossmann. 2006. Structural changes of bacteriophage phi 29 upon DNA packaging and release. EMBO J. 25:5229-5239.
18. Orlova, E. V., B. Gowen, A. Droge, A. Stiege, F. Weise, R. Lurz, M. van Heel, and P. Tavares. 2003. Structure of a viral DNA gatekeeper at 10 angstrom resolution by cryo-electron microscopy. EMBO J. 22:1255-1262.
19. Effantin, G., P. Boulanger, E. Neumann, L. Letellier, and J. F. Conway. 2006. Bacteriophage T5 structure reveals similarities with HK97 and T4 suggesting evolutionary relationships. J. Mol. Biol. 361:993-1002.
20. Lebedev, A. A., M. H. Krause, A. L. Isidro, A. Vagin, E. V. Orlova, J. Turner, E. J. Dodson, P. Tavares, and A. A. Antson. 2007. Structural framework for DNA translocation via the viral portal protein. EMBO J. 26:1984-1994.
21. Gabashvili, I. S., and A. Y. Grosberg. 1992. Dynamics of double-stranded DNA reptation from bacteriophage. J. Biomol. Struct. Dyn. 9:911-920.
22. Leiman, P. G., P. R. Chipman, V. A. Kostyuchenko, V. V. Mesyanzhinov, and M. G. Rossmann. 2004. Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host. Cell. 118:419-429.
23. Kemp, P., M. Gupta, and I. J. Molineux. 2004. Bacteriophage T7 DNA ejection into cells is initiated by an enzyme-like mechanism. Mol. Microbiol. 53:1251-1265.
24. Tang, L., W. R. Marion, G. Cingolani, P. E. Prevelige, and J. E. Johnson. 2005. Three-dimensional structure of the bacteriophage P22 tail machine. EMBO J. 24:2087-2095.
25. Zhang, X. Y., and K. N. Houk. 2005. Why enzymes are proficient catalysts: beyond the Pauling paradigm. Acc. Chem. Res. 38:379-385.
26. Wernsdorfer, W., E. B. Orozco, K. Hasselbach, A. Benoit, B. Barbara, N. Demoncy, A. Loiseau, H. Pascard, and D. Mailly. 1997. Experimental evidence of the Neel-Brown model of magnetization reversal. Phys. Rev. Lett. 78:1791-1794.
27. Moritz, J., B. Dieny, J. P. Nozieres, Y. Pennec, J. Camarero, and S. Pizzini. 2005. Experimental evidence of a 1/H activation law in nanostructures with perpendicular magnetic anisotropy. Phys. Rev. B. 71:100402.