Extraction and analysis of DNA from archaeological specimens

ACS Symposium Series

Volumn 968, Issue , 2007, Pages 78-98

  Kemp, Brian M ^a   Monroe, Cara ^b   Smith, David Glenn ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 36749100793     PISSN: 00976156     EISSN: None     Source Type: Book Series    
DOI: 10.1021/bk-2007-0968.ch004     Document Type: Conference Paper

References (63)

1. Lindahl, T. Nature (London) 1993, 362, 709-715.
2. Pääbo, S. In PCR Protocols: A Guide to Methods and Applications; Innis, M. A., Ed.; Academic Press: San Diego, 1990; pp 159-166.
3. Gilbert, M. T. P.; Shapiro, B.; Drummond, A. J.; Cooper, A. J. Archaeol. Sci. 2005, 32, 1053-1060.
4. De la Cruz, I.; González-Oliver, A.; Kemp, B. M.; Román, J. A.; Smith, D. G.; Torre-Blanco, A. Curr. Anthropol. Submitted.
5. Kemp, B. M.; Monroe, C.; Smith, D. G. J. Archaeol. Sci. In Press.
6. Kaestle, F. A. Ph.D. thesis, University of California, 1998.
7. Bettinger, R. L.; Baumhoff, M. A. Am. Antiq. 1982, 47, 485-503.
8. Lamb, S. M. Int. J. Am. Linguist. 1958, 24, 95-100.
9. Kemp, B. M.; Malhi, R. S.; McDonough, J.; Bolnick, D. A.; Eshleman, J. A.; Rickards, O.; Martinez-Labarga, C.; Johnson, J. R.; Lorenz, J. G.; Dixon, E. J.; Fifield, T. E.; Heaton, T. H.; Worl, R.; Smith, D. G. Am. J. Phys. Anthropol. In Review.
10. Keyser-Tracqui, C.; Crubezy, E.; Ludes, B. Am. J. Hum. Genet. 2003, 73, 247-260.
11. Shapiro, B.; Drummond, A. J.; Rambaut, A.; Wilson, M. C.; Matheus, P. E.; Sher, A. V.; Pybus, O. G.; Gilbert, M. T.; Barnes, I.; Binladen, J.; Willerslev, E.; Hansen, A. J.; Baryshnikov, G. F.; Burns, J. A.; Davydov, S.; Driver, J. C.; Froese, D. G.; Harington, C. R.; Keddie, G.; Kosintsev, P.; Kunz, M. L.; Martin, L. D.; Stephenson, R. O.; Storer, J.; Tedford, R.; Zimov, S.; Cooper, A. Science (Washington, D.C.) 2004, 306, 1561-1565.
12. Poinar, H. N.; Hofreiter, M.; Spaulding, W. G.; Martin, P. S.; Stankiewicz, B. A.; Bland, H.; Evershed, R. P.; Possnert, G.; Paabo, S. Science (Washington, D.C.) 1998, 281, 402-406.
13. Speller, C. F.; Yang, D. Y.; Hayden, B. J. Archaeol. Sci. 2005, 32, 1378-1389.
14. Drancourt, M.; Aboudharam, G.; Signoli, M.; Dutour, O.; Raoult, D. Proc. Natl. Acad. Sci. 1998, 95, 12637-12640.
15. Gilbert, M. T.; Cuccui, J.; White, W.; Lynnerup, N.; Titball, R. W.; Cooper, A.; Prentice, M. B. Microbiology 2004, 150, 341-354.
16. Donoghue, H. D.; Marcsik, A.; Matheson, C.; Vernon, K.; Nuorala, E.; Molto, J. E.; Greenblatt, C. L.; Spigelman, M. Proc. R. Soc. B 2005, 272, 389-394.
17. Bouwman, A. S.; Brown, T. A. J. Archaeol. Sci. 2005, 32, 703-713.
18. Mitchell, P. D. Am. J. Phys. Anthropol. 2003, 121, 117-124.
19. Zink, A.; Wolf, H.; Nerlich, A. G. Arch. Pathol. Lab. Med. 2000, 124, 1614-1618.
20. Higuchi, R.; Bowman, B.; Freiberger, M.; Ryder, O.; Wilson, A. C. Nature 1984, 312, 282-284.
21. Gilbert, M. T. P. Ph.D. thesis, University of Oxford, 2003.
22. Poinar, H. N.; Kuch, M.; Sobolik, K. D.; Barnes, I.; Stankiewicz, A. B.; Kuder, T.; Spaulding, W. G.; Bryant, V. M.; Cooper, A.; Paabo, S. Proc. Natl. Acad. Sci. 2001, 98, 4317-4322.
23. Sutton, M. Q.; Malik, M.; Ogram, A. J. Archaeol. Sci. 1996, 23, 263-267.
24. LeBlanc, S. A.; Kreisman, L.; Kemp, B. M.; Carlyle, S. W.; Dhody, A.; Smiley, F.; Benjamin, T. In Preparation.
25. Kaestle, F. A.; Horsburgh, K. A. Yearbook Phys. Anthropol. 2002, 45, 92-130.
26. Mulligan, C. J. Am. Antiq. 2006, 71, 365-380.
27. O'Rourke, D. H.; Hayes, M. G.; Carlyle, S. W. Annu. Rev. Anthropol. 2000, 29, 217-242.
28. Götherström, A.; Collins, M. J.; Angerbjorn, A.; Lidén, K. Archaeometry 2002, 44, 395-404.
29. Shook, B. A. Ph.D. thesis, University of California, 2005.
30. Palumbi, S. R. In Molecular Systematics; Hillis, D. M., Moritz, C., Mable, B. K., Eds.; Sinauer Associates: Sunderland, MA, 1996; pp 205-247.
31. Kemp, B. M.; Smith, D. G. Foren. Sci. Int. 2005, 154, 53-61.
32. Yang, D. Y.; Watt, K. J. Archaeol. Sci. 2005, 32, 331-336.
33. Watt, K. E. MA. thesis, Simon Fraser Univerisity, 2005.
34. Salamon, M.; Tuross, N.; Arensburg, B.; Weiner, S. Proc. Natl. Acad. Sci. 2005, 102, 13783-13788.
35. Kelman, L. M.; Kelman, Z. J. Verleb. Paleontol. 1999, 19, 8-20.
36. Eshleman, J.; Smith, D. G. Electrophoresis 2001, 22, 4316-4319.
37. Tuross, N. Experientia 1994, 50, 530-535.
38. Kalmár, T.; Bachrati, C. Z.; Marcsik, A.; Raskó, I. Nuc. Ac. Res. 2000, 28, e67.
39. Hummel, S.; Herrmann, B. In Ancient DNA: Recovery and Analysis of Genetic Material from Paleontological, Archaeological, Museum, and Forensic Specimens; Hummel, S., Herrmann, B., Eds.; Springer-Verlag: New York, 1994; pp 59-68.
40. Poinar, G. O.; Poinar. In Ancient DNA: Recovery and Analysis of Genetic Material from Paleontological, Archaeological, Museum, and Forensic Specimens; Herrmann, B., Ed.; Springer-Verlag: New York, 1994; pp 59-68.
41. Cooper, A. In Ancient DNA: Recovery and Analysis of Genetic Material from Paleontological, Archaeological, Museum, and Forensic Specimens; Hummel, S., Herrmann, B., Eds.; Springer-Verlag: New York, 1994; pp 149-165.
42. Scholz, M.; Giddings, I.; Pusch, C. M. Anal. Biochem. 1998, 259, 283-286.
43. Kemp, B. M.; Resendez, A.; Román Berrelleza, J. A.; Malhi, R. S.; Smith, D. G. In Biomolecular Archaeology: Genetic Approaches to the Past; Reed, D. M., Ed.; Southern Illinois University: Carbondale, IL, 2005; pp 22-46.
44. Hänni, C.; Brousseau, T.; Laudet, V.; Stehelin, D. Nue. Ac. Res. 1995, 23, 881-882.
45. Höss, M.; Pääbo, S. Nuc. Ac. Res. 1993, 27, 3913-3914.
46. Fisher, D. L.; Holland, M. M.; Mitchell, L.; Sledzik, P. S.; Wilcox, A. W.; Wadhams, M.; Weedn, V. W. J. Forensic Sci. 1993, 38, 60-68.
47. Pääbo, S.; Gifford, J. A.; Wilson, A. C. Nuc. Ac. Res. 1988, 16, 9775-9788.
48. Edwards, C. J.; MacHugh, D. E.; Dobney, K. M.; Martin, L.; Russell, N.; Horwitz, L. K.; Mcintosh, S. K.; MacDonald, K. C.; Helmer, D.; Tresset, A.; Vigne, J.-D.; Bradley, D. G. J. Archaeol. Sci. 2004, 31, 695-710.
49. Yang, D. Y.; Eng, B.; Saunders, S. R. Hum. Biol. 2003, 75, 355-364.
50. Schurr, T. G.; Ballinger, S. W.; Gan, Y.-Y.; Hodge, J. A.; Merriwether, D. A.; Lawrence, D. N.; Knowler, W. C.; Weiss, K. M.; Wallace, D. C. Am. J. Hum. Genet. 1990, 46, 613-623.
51. Forster, P.; Harding, R.; Torroni, A.; Bandelt, H.-J. Am. J. Hum. Genet. 1996, 59, 935-945.
52. Brown, M. D.; Hosseini, S. H.; Torroni, A.; Bandelt, H.-J.; Allen, J. C.; Schurr, T. G.; Scozzari, R.; Cruciani, F.; Wallace, D. C. Am. J. Hum. Genet. 1998, 63, 1852-1861.
53. Sullivan, K. M.; Mannucci, A.; Kimpton, C. P.; Gill, P. Biotechniques 1993, 15, 636-641.
54. Don, R. H.; Cox, P. T.; Wainwright, B. J.; Baker, K.; Mattick, J. S. Nuc. Ac. Res. 1991, 19, 4008.
55. Gilbert, M. T. P.; Bandelt, H.-J.; Hofreiter, M.; Barnes, I. Trends Ecol. Evol. 2005, 20, 541-544,
56. Stone, A. C.; Milner, G. R.; Paabo, S.; Stoneking, M. Am. J. Phys. Anthropol. 1996, 99, 231-238.
57. Schmidt, D.; Hummel, S.; Herrmann, B. Am. J. Phys. Anthropol. 2003, 121, 337-341.
58. Stone, A. C.; Stoneking, M. Am. J. Phys. Anthropol. 1993, 92, 463-471.
59. Wrischnik, L. A.; Higuchi, R. G.; Stoneking, M.; Erlich, H. A. Nuc. Ac. Res. 1987, 15, 529-542.
60. Parr, R. L.; Carlyle, S. W.; O'Rourke, D. H. Am. J. Phys. Anthropol. 1996, 99, 507-518.
61. Kaestle, F. A. Report on DNA Analysis of the Remains of "Kennewick Man" from Columbia Park, Washington. National Parks Service, website http://www.cr.nps.gov/aad/kennewick/index.htm, 2000
62. Anderson, S.; Bankier, A. T.; Barrel, B. G.; DeBulin, M. H. L.; Coulson, A. R.; Drouin, J.; Eperon, I. C.; Nierlich, D. P.; Roe, B. A.; Sanger, F.; Schreier, P. H.; Smith, A. J. H.; Staden, R.; Young, I. G. Nature (London) 1981, 290, 457-465.
63. Andrews, R. M.; Kubacka, I.; Chinnery, P. F.; Lightowlers, R. N.; Turnbull, D. M.; Howell, N. Nat. Genet. 1999, 23, 147.