메뉴 건너뛰기




Volumn 16, Issue 4, 2007, Pages 198-206

Evaluation of whole genome amplification protocols for array and oligonucleotide CGH

Author keywords

aCGH; oCGH; Whole genome amplification

Indexed keywords

FORMALDEHYDE; OLIGONUCLEOTIDE; PARAFFIN;

EID: 36649029778     PISSN: 10529551     EISSN: None     Source Type: Journal    
DOI: 10.1097/PDM.0b013e3180f62ad5     Document Type: Article
Times cited : (9)

References (31)
  • 1
    • 0037299508 scopus 로고    scopus 로고
    • Comparative genomic hybridization of 49 primary retinoblastoma tumors identifies chromosomal regions associated with histopathology, progression, and patient outcome
    • Lillington DM, Kingston JE, Coen PG, et al. Comparative genomic hybridization of 49 primary retinoblastoma tumors identifies chromosomal regions associated with histopathology, progression, and patient outcome. Genes Chromosomes Cancer. 2003;36:121-128.
    • (2003) Genes Chromosomes Cancer , vol.36 , pp. 121-128
    • Lillington, D.M.1    Kingston, J.E.2    Coen, P.G.3
  • 2
    • 33751311949 scopus 로고    scopus 로고
    • DNA copy number amplification profiling of human neoplasms
    • Myllykangas S, Himberg J, Bohling T, et al. DNA copy number amplification profiling of human neoplasms. Oncogene. 2006;25:7324-7332.
    • (2006) Oncogene , vol.25 , pp. 7324-7332
    • Myllykangas, S.1    Himberg, J.2    Bohling, T.3
  • 3
    • 3242672465 scopus 로고    scopus 로고
    • Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors
    • Paris PL, Andaya A, Fridlyand J, et al. Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors. Hum Mol Genet. 2004;13:1303-1313.
    • (2004) Hum Mol Genet , vol.13 , pp. 1303-1313
    • Paris, P.L.1    Andaya, A.2    Fridlyand, J.3
  • 4
    • 27744530171 scopus 로고    scopus 로고
    • Preliminary evaluation of prostate cancer metastatic risk biomarkers
    • Paris PL, Weinberg V, Simko J, et al. Preliminary evaluation of prostate cancer metastatic risk biomarkers. Int J Biol Markers. 2005;20:141-145.
    • (2005) Int J Biol Markers , vol.20 , pp. 141-145
    • Paris, P.L.1    Weinberg, V.2    Simko, J.3
  • 5
    • 20244370742 scopus 로고    scopus 로고
    • Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma
    • Vandesompele J, Baudis M, De Preter K, et al. Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma. J Clin Oncol. 2005;23:2280-2299.
    • (2005) J Clin Oncol , vol.23 , pp. 2280-2299
    • Vandesompele, J.1    Baudis, M.2    De Preter, K.3
  • 6
    • 17344371740 scopus 로고    scopus 로고
    • High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
    • Pinkel D, Segraves R, Sudar D, et al. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet. 1998;20:207-211.
    • (1998) Nat Genet , vol.20 , pp. 207-211
    • Pinkel, D.1    Segraves, R.2    Sudar, D.3
  • 7
    • 0037370718 scopus 로고    scopus 로고
    • High-resolution analysis of paraffin-embedded and formalin-fixed prostate tumors using comparative genomic hybridization to genomic microarrays
    • Paris PL, Albertson DG, Alers JC, et al. High-resolution analysis of paraffin-embedded and formalin-fixed prostate tumors using comparative genomic hybridization to genomic microarrays. Am J Pathol. 2003;162:763-770.
    • (2003) Am J Pathol , vol.162 , pp. 763-770
    • Paris, P.L.1    Albertson, D.G.2    Alers, J.C.3
  • 8
    • 20044382043 scopus 로고    scopus 로고
    • Array-based comparative genomic hybridization from formalin-fixed, paraffin-embedded breast tumors
    • Devries S, Nyante S, Korkola J, et al. Array-based comparative genomic hybridization from formalin-fixed, paraffin-embedded breast tumors. J Mol Diagn. 2005;7:65-71.
    • (2005) J Mol Diagn , vol.7 , pp. 65-71
    • Devries, S.1    Nyante, S.2    Korkola, J.3
  • 9
    • 0032127192 scopus 로고    scopus 로고
    • Laser-capture microdissection: Opening the microscopic frontier to molecular analysis
    • Simone NL, Bonner RF, Gillespie JW, et al. Laser-capture microdissection: opening the microscopic frontier to molecular analysis. Trends Genet. 1998;14:272-276.
    • (1998) Trends Genet , vol.14 , pp. 272-276
    • Simone, N.L.1    Bonner, R.F.2    Gillespie, J.W.3
  • 10
    • 0034812285 scopus 로고    scopus 로고
    • Unlocking the archive - gene expression in paraffin-embedded tissue
    • Lewis F, Maughan NJ, Smith V, et al. Unlocking the archive - gene expression in paraffin-embedded tissue. J Pathol. 2001;195:66-71.
    • (2001) J Pathol , vol.195 , pp. 66-71
    • Lewis, F.1    Maughan, N.J.2    Smith, V.3
  • 11
    • 0029966845 scopus 로고    scopus 로고
    • Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
    • Cheung VG, Nelson SF. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc Natl Acad Sci USA. 1996;93:14676-14679.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 14676-14679
    • Cheung, V.G.1    Nelson, S.F.2
  • 12
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple displacement amplification
    • Dean FB, Hosono S, Fang L, et al. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA. 2002;99:5261-5266.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5261-5266
    • Dean, F.B.1    Hosono, S.2    Fang, L.3
  • 13
    • 0037315428 scopus 로고    scopus 로고
    • Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH
    • Lage JM, Leamon JH, Pejovic T, et al. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res. 2003;13:294-307.
    • (2003) Genome Res , vol.13 , pp. 294-307
    • Lage, J.M.1    Leamon, J.H.2    Pejovic, T.3
  • 14
    • 0026755807 scopus 로고
    • Whole genome amplification from a single cell: Implications for genetic analysis
    • Zhang L, Cui X, Schmitt K, et al. Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci USA. 1992;89:5847-5851.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5847-5851
    • Zhang, L.1    Cui, X.2    Schmitt, K.3
  • 15
    • 4444226427 scopus 로고    scopus 로고
    • Whole genome amplification for CGH analysis: Linker-adapter PCR as the method of choice for difficult and limited samples
    • Pirker C, Raidl M, Steiner E, et al. Whole genome amplification for CGH analysis: Linker-adapter PCR as the method of choice for difficult and limited samples. Cytometry A. 2004;61:26-34.
    • (2004) Cytometry A , vol.61 , pp. 26-34
    • Pirker, C.1    Raidl, M.2    Steiner, E.3
  • 16
    • 2442645449 scopus 로고    scopus 로고
    • Balanced-PCR amplification allows unbiased identification of genomic copy changes in minute cell and tissue samples
    • Wang G, Brennan C, Rook M, et al. Balanced-PCR amplification allows unbiased identification of genomic copy changes in minute cell and tissue samples. Nucleic Acids Res. 2004;32:e76.
    • (2004) Nucleic Acids Res , vol.32
    • Wang, G.1    Brennan, C.2    Rook, M.3
  • 17
    • 18744413535 scopus 로고    scopus 로고
    • Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA
    • Bredel M, Bredel C, Juric D, et al. Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA. J Mol Diagn. 2005;7:171-182.
    • (2005) J Mol Diagn , vol.7 , pp. 171-182
    • Bredel, M.1    Bredel, C.2    Juric, D.3
  • 18
    • 6344235638 scopus 로고    scopus 로고
    • Genotyping accuracy for whole-genome amplification of DNA from buccal epithelial cells
    • Leviel K, Olarte M, Sullivan PF. Genotyping accuracy for whole-genome amplification of DNA from buccal epithelial cells. Twin Res. 2004;7:482-484.
    • (2004) Twin Res , vol.7 , pp. 482-484
    • Leviel, K.1    Olarte, M.2    Sullivan, P.F.3
  • 19
    • 8744249226 scopus 로고    scopus 로고
    • DNA amplification method tolerant to sample degradation
    • Wang G, Maher E, Brennan C, et al. DNA amplification method tolerant to sample degradation. Genome Res. 2004;14:2357-2366.
    • (2004) Genome Res , vol.14 , pp. 2357-2366
    • Wang, G.1    Maher, E.2    Brennan, C.3
  • 22
    • 0030791463 scopus 로고    scopus 로고
    • Characterization of chromosome changes in two human prostatic carcinoma cell lines (PC-3 and DU145) using chromosome painting and comparative genomic hybridization
    • Bernardino J, Bourgeois CA, Muleris M, et al. Characterization of chromosome changes in two human prostatic carcinoma cell lines (PC-3 and DU145) using chromosome painting and comparative genomic hybridization. Cancer Genet Cytogenet. 1997;96:123-128.
    • (1997) Cancer Genet Cytogenet , vol.96 , pp. 123-128
    • Bernardino, J.1    Bourgeois, C.A.2    Muleris, M.3
  • 23
    • 0032006294 scopus 로고    scopus 로고
    • Genetic alterations in prostate cancer cell lines detected by comparative genomic hybridization
    • Nupponen NN, Hyytinen ER, Kallioniemi AH, et al. Genetic alterations in prostate cancer cell lines detected by comparative genomic hybridization. Cancer Genet Cytogenet. 1998;101:53-57.
    • (1998) Cancer Genet Cytogenet , vol.101 , pp. 53-57
    • Nupponen, N.N.1    Hyytinen, E.R.2    Kallioniemi, A.H.3
  • 24
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen AB, Venkatraman ES, Lucito R, et al. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics. 2004;5:557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3
  • 25
    • 1642404463 scopus 로고    scopus 로고
    • Genetic aberrations in prostate carcinoma detected by comparative genomic hybridization and microsatellite analysis: Association with progression and angiogenesis
    • Strohmeyer DM, Berger AP, Moore DH II, et al. Genetic aberrations in prostate carcinoma detected by comparative genomic hybridization and microsatellite analysis: association with progression and angiogenesis. Prostate. 2004;59:43-58.
    • (2004) Prostate , vol.59 , pp. 43-58
    • Strohmeyer, D.M.1    Berger, A.P.2    Moore II, D.H.3
  • 26
    • 0028887369 scopus 로고
    • Genetic changes in primary and recurrent prostate cancer by comparative genomic hybridization
    • Visakorpi T, Kallioniemi AH, Syvanen AC, et al. Genetic changes in primary and recurrent prostate cancer by comparative genomic hybridization. Cancer Res. 1995;55:342-347.
    • (1995) Cancer Res , vol.55 , pp. 342-347
    • Visakorpi, T.1    Kallioniemi, A.H.2    Syvanen, A.C.3
  • 27
    • 10744220165 scopus 로고    scopus 로고
    • Evaluation of genetic patterns in different tumor areas of intermediate-grade prostatic adenocarcinomas by high-resolution genomic array analysis
    • van Dekken H, Paris PL, Albertson DG, et al. Evaluation of genetic patterns in different tumor areas of intermediate-grade prostatic adenocarcinomas by high-resolution genomic array analysis. Genes Chromosomes Cancer. 2004;39:249-256.
    • (2004) Genes Chromosomes Cancer , vol.39 , pp. 249-256
    • van Dekken, H.1    Paris, P.L.2    Albertson, D.G.3
  • 28
    • 30944435397 scopus 로고    scopus 로고
    • Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA
    • Little SE, Vuononvirta R, Reis-Filho JS, et al. Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA. Genomics. 2006;87:298-306.
    • (2006) Genomics , vol.87 , pp. 298-306
    • Little, S.E.1    Vuononvirta, R.2    Reis-Filho, J.S.3
  • 29
    • 33846450713 scopus 로고    scopus 로고
    • Development of a DNA-labeling system for array-based comparative genomic hybridization
    • Lieu PT, Jozsi P, Gilles P, et al. Development of a DNA-labeling system for array-based comparative genomic hybridization. J Biomol Tech. 2005;16:104-111.
    • (2005) J Biomol Tech , vol.16 , pp. 104-111
    • Lieu, P.T.1    Jozsi, P.2    Gilles, P.3
  • 30
    • 0033922534 scopus 로고    scopus 로고
    • Improving degenerate oligonucleotide primed PCR-comparative genomic hybridization for analysis of DNA copy number changes in tumors
    • Huang Q, Schantz SP, Rao PH, et al. Improving degenerate oligonucleotide primed PCR-comparative genomic hybridization for analysis of DNA copy number changes in tumors. Genes Chromosomes Cancer. 2000;28:395-403.
    • (2000) Genes Chromosomes Cancer , vol.28 , pp. 395-403
    • Huang, Q.1    Schantz, S.P.2    Rao, P.H.3
  • 31
    • 0035179871 scopus 로고    scopus 로고
    • Assembly of microarrays for genome-wide measurement of DNA copy number
    • Snijders AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nat Genet. 2001;29:263-264.
    • (2001) Nat Genet , vol.29 , pp. 263-264
    • Snijders, A.M.1    Nowak, N.2    Segraves, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.