Genetic variation in the endangered Anisodus tanguticus (Solanaceae), an alpine perennial endemic to the Qinghai-Tibetan Plateau

Genetica

Volumn 132, Issue 2, 2008, Pages 123-129

  Zheng, Wei ^a,c   Wang, Liuyang ^a   Meng, Lihua ^a   Liu, Jianquan ^a,b  

^a NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^b LANZHOU UNIVERSITY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Anisodus tanguticus; Conservation; Genetic diversity; RAPDs; The Qiughai Tibetan Plateau

Indexed keywords

ANGIOSPERM; ARTICLE; CHINA; CLUSTER ANALYSIS; GENETIC POLYMORPHISM; GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA;

CLUSTER ANALYSIS; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SOLANACEAE; TIBET;

ANISODUS TANGUTICUS; MAGNOLIOPHYTA; SOLANACEAE;

EID: 36649017209     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-007-9154-5     Document Type: Article

References (37)

1. Bolaric S, Barth S, Melchinger AE, Posselt UK (2005) Genetic diversity in European perennial ryegrass cultivars investigated with RAPD markers. Plant Breed 124:161-166
2. Borowsky R (2001) Estimating nucleotide diversity from random amplified polymorphic DNA and amplified fragment length polymorphism data. Mol Phylogenet Evol 18:143-148
3. Bussell JD (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Mol Ecol 8:775-789
4. Carlson JE (1991) Segregation of random amplified DNA Markers in F1 progeny of conifers. Theor Appl Genet 83:194-200
5. Chen SL, Xia T, Chen SY, Zhou YJ (2005) RAPD Profiling in detecting genetic variation in endemic Coelonema (Brassicaceae) of Qinghai-Tibet Plateau of China. Biochem Genet 43:189-201
6. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochem Bull 19:11-15
7. Ellstand NC, Elam DR (1993) Population genetic consequences of small population size: implications for plant conservation. Annu Rev Ecol Syst 24:217-242
8. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity 72:250-259
9. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distance among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:176-191
10. Gabrielsen TM, Bachmann K, Jakobsen KS, Brochmann C (1997) Glacial survival does not matter: RAPD phylogeography of Nordic Saxifraga oppositifolia. Mol Ecol 6:831-842
11. Ge XJ, Zhang LB, Yuan YM, Hao G, Chiang TY (2005) Strong genetic differentiation of the East-Himalayan Megacodon stylophorus (Gentianaceae) detected by inter-simple sequence repeats (ISSR). Biodivers Conserv 14:849-861
12. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Population genetics and germplasm resources in crop improvement. Sinauer Associates, Sunderland
13. Hamrick JL, Godt MJW (1996) Conservation genetics of endemic plant species. In: Avise JC, Hamrick JL (eds) Conservation genetics: case histories from nature. Chapman & Hall, New York
14. He YJ, Cui GF, Feng ZW, Zheng J, Dong JS, Li YB (2004) Conservation priorities for plant species of forest-meadow ecotone in Sanjiangyuan nature reserve. Chin J Appl Ecol 15(8):1307-1312
15. Huff DR, Peakall R, Smouse PE (1993) RAPD variation within and among natural populations of outcrossing buffalograss (Buchloe dactyloides (Nutt.) Engelm). Theor Appl Genet 8:927-934
16. Liu JQ, Gao TG, Chen ZD, Lu AM (2002) Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae). Mol Phylogenet Evol 23:307-325
17. Liu JQ, Wang YJ, Wang AL, Ohba H, Abbott R (2006a) Radiation and diversification of Ligularia-Cremanthodium-Parasenecio triggered by uplifts of the Qinghai-Tibetan Plateau. Mol Phylogenet Evol 38:31-49
18. Liu JM, Wang L, Geng YP, Wang QB, Luo LJ, Zhong Y (2006b) Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Genetica 128:385-394
19. Lynch M, Milligan GG (1994) Analysis of population genetic structure with RAPD markers. Mol Ecol 3:91-99
20. Miller MP (1997) Tools for population genetic analysis. Version 1.3. Department of Biological Sciences, Northern Arizona University, Flagstaff
21. Miller MP (1998) Amova-Prep 1.01. A program for the preparation of AMOVA input files from dominant-market raw data. Northern Arizona University, Flagstaff AZ. http://herb.bio.nau.edu/miller/amovaprp.htm
22. Myers N, Mittermeier RA, Mittermeier CG, Fonseca da GAB, Kentm J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853-858
23. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
24. Newton AC, Allnutt TR, Gillies ACM, Lowe AJ, Ennos RA (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends Ecol Evol 14:140-145
25. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143-1155
26. Peakall R, Smouse PE, Huff DR (1995) Evolutionary implications of allozyme and RAPD variation in diploid populations of dioecious buffalograss, Buchloe dactyloides. Mol Ecol 4:135-147
27. Sambrook J, Fritsch EF, Maniatis T (eds) (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Press, Cold Spring Harbor, NY
28. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeographic studies in plants: problems and prospects. Mol Ecol 7:465-474
29. Wang AL, Yang MH, Liu JQ (2005) Molecular phylogeny, recent radiation and evolution of gross morphology of the rhubarb genus Rheum (Polygonaceae) inferred from chloroplast DNA trnL-F sequences. Ann Bot London 96:489-498
30. Weising K, Nybom H, Wolff K, Meyer W (eds) (1995) DNA fingerprinting in plants and fungi. CRC Press, Boca Raton
31. Wolfe AD, Liston A (1998) Contributions of PCR-based methods to plant systematics and evolutionary biology. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II, DNA sequencing. Kluwer Academic Publishers, Dordrecht
32. Xia T, Chen SL, Chen SY, Ge XJ (2005) Genetic variation within and among populations of Rhodiola alsia (Crassulaceae) native to the Tibetan Plateau as detected by ISSR markers. Biochem Genet 43:87-101
33. Yang DZ, Zhang ZY, Lu AM, Sun K, Liu JQ (2002) Floral organogenesis and development of two taxa of the Solanaceae-Anisodus tanguticus and Atropa belladonna. Israel J Plant Sci 50:127-134
34. Yang YC (ed) (1991) Tibetan medicines. Qinghai People Press, Qinghai
35. Yap IV, Nelson RJ (1996) WinBoot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. International Rice Research Instititute (IRRI), Manila, Philippines
36. Yeh FC, Yang R, Boyle T (1999) POPGENE. Microsoft Windows-based freeware for population genetic analysis. Release 1.31. University of Alberta, Edmonton, Canada
37. Zheng D (1996) The system of physico-geographical regions of the Qinghai-Tibet (Xizang) Plateau. Sci China Ser D 39:410-417