메뉴 건너뛰기




Volumn 73, Issue 22, 2007, Pages 7488-7493

Design and performance of a 16S rRNA-targeted oligonucleotide probe for detection of members of the genus Bdellovibrio by fluorescence in situ hybridization

Author keywords

[No Author keywords available]

Indexed keywords

ENVIRONMENTAL IMPACT; FLUORESCENCE; OLIGONUCLEOTIDES; RNA;

EID: 36649017113     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01112-07     Document Type: Article
Times cited : (22)

References (29)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 0033965720 scopus 로고    scopus 로고
    • A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively
    • Baer, M. L., J. Ravel, J. Chun, R. T. Hill, and H. N. Williams. 2000. A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively. Int. J. Syst. Evol. Microbiol. 50:219-224.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 219-224
    • Baer, M.L.1    Ravel, J.2    Chun, J.3    Hill, R.T.4    Williams, H.N.5
  • 5
    • 0042529205 scopus 로고    scopus 로고
    • Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?
    • Behrens, S., B. M. Fuchs, F. Mueller, and R. Amann. 2003. Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit? Appl. Environ. Microbiol. 69:4935-4941.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 4935-4941
    • Behrens, S.1    Fuchs, B.M.2    Mueller, F.3    Amann, R.4
  • 7
    • 0026660745 scopus 로고
    • A conjugation procedure for Bdellovibrio bacteriovorus and its use to identify DNA sequences that enhance the plaque-forming ability of a spontaneous host-independent mutant
    • Cotter, T. W., and M. F. Thomashow. 1992. A conjugation procedure for Bdellovibrio bacteriovorus and its use to identify DNA sequences that enhance the plaque-forming ability of a spontaneous host-independent mutant. J. Bacteriol. 174:689-697.
    • (1992) J. Bacteriol , vol.174 , pp. 689-697
    • Cotter, T.W.1    Thomashow, M.F.2
  • 8
    • 5444228274 scopus 로고    scopus 로고
    • Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov. comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoraceae fam. nov
    • Davidov, Y., and E. Jurkevitch. 2004. Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov. comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoraceae fam. nov. Int. J. Syst. Evol. Microbiol. 54:1439-1452.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 1439-1452
    • Davidov, Y.1    Jurkevitch, E.2
  • 9
    • 33746683876 scopus 로고    scopus 로고
    • Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like-organisms
    • Davidov, Y., A. Friedjung, and E. Jurkevitch. 2006. Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like-organisms. Environ. Microbiol. 8:1667-1673.
    • (2006) Environ. Microbiol , vol.8 , pp. 1667-1673
    • Davidov, Y.1    Friedjung, A.2    Jurkevitch, E.3
  • 10
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single microbial cells
    • DeLong, E. F., G. S. Wickham, and N. R. Pace. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single microbial cells. Science 243:1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 11
    • 1642378624 scopus 로고    scopus 로고
    • Downregulation of the motA gene delays the escape of the obligate predator Bdellovibrio bacteriovorus 109J from bdelloplasts of bacterial prey cells
    • Flannagan, R. S., M. A. Valvano, and S. F. Koval. 2004. Downregulation of the motA gene delays the escape of the obligate predator Bdellovibrio bacteriovorus 109J from bdelloplasts of bacterial prey cells. Microbiology 150:649-656.
    • (2004) Microbiology , vol.150 , pp. 649-656
    • Flannagan, R.S.1    Valvano, M.A.2    Koval, S.F.3
  • 12
    • 0029862441 scopus 로고    scopus 로고
    • Isolation of bdellovibrios that prey on Escherichia coli O157:H7 and Salmonella species and application for removal of prey from stainless steel surfaces
    • Fratamico, P. M., and P. H. Cooke. 1996. Isolation of bdellovibrios that prey on Escherichia coli O157:H7 and Salmonella species and application for removal of prey from stainless steel surfaces. J. Food Safety 16:161-173.
    • (1996) J. Food Safety , vol.16 , pp. 161-173
    • Fratamico, P.M.1    Cooke, P.H.2
  • 13
    • 0029124411 scopus 로고
    • Ability of Bdellovibrio bacteriovorus 109J to lyse gram-negative food-borne pathogenic and spoilage bacteria
    • Fratamico, P. M., and R. C. Whiting. 1995. Ability of Bdellovibrio bacteriovorus 109J to lyse gram-negative food-borne pathogenic and spoilage bacteria. J. Food Prot. 58:160-164.
    • (1995) J. Food Prot , vol.58 , pp. 160-164
    • Fratamico, P.M.1    Whiting, R.C.2
  • 14
    • 0026581202 scopus 로고
    • Detection of microorganisms in soil after in situ hybridization with rRNA-targeted, fluorescently labeled oligonucleotides
    • Hahn, D., R. I. Amann, W. Ludwig, A. D. L. Akkermans, and K. H. Schleifer. 1992. Detection of microorganisms in soil after in situ hybridization with rRNA-targeted, fluorescently labeled oligonucleotides. J. Gen. Microbiol. 138:879-887.
    • (1992) J. Gen. Microbiol , vol.138 , pp. 879-887
    • Hahn, D.1    Amann, R.I.2    Ludwig, W.3    Akkermans, A.D.L.4    Schleifer, K.H.5
  • 15
    • 36549051503 scopus 로고    scopus 로고
    • The genus Bdellovibrio
    • M. Dworkin et al, ed, 3rd ed. Springer-Verlag, New York, NY
    • Jurkevitch, E. 2006. The genus Bdellovibrio, p. 12-30. In M. Dworkin et al. (ed.), The prokaryotes: a handbook on the biology of bacteria, 3rd ed. Springer-Verlag, New York, NY.
    • (2006) The prokaryotes: A handbook on the biology of bacteria , pp. 12-30
    • Jurkevitch, E.1
  • 16
    • 0034654228 scopus 로고    scopus 로고
    • Design and uses of Bdellovibrio 16S rRNA-targeted oligonucleotides
    • Jurkevitch, E., and B. Ramati. 2000. Design and uses of Bdellovibrio 16S rRNA-targeted oligonucleotides. FEMS Microbiol. Lett. 184:265-271.
    • (2000) FEMS Microbiol. Lett , vol.184 , pp. 265-271
    • Jurkevitch, E.1    Ramati, B.2
  • 17
    • 0034096996 scopus 로고    scopus 로고
    • Prey range characterization, ribotyping, and diversity of soil and rhizosphere Bdellovibrio spp. isolated on phytopathogenic bacteria
    • Jurkevitch, E., D. Minz, B. Ramati, and G. Barel. 2000. Prey range characterization, ribotyping, and diversity of soil and rhizosphere Bdellovibrio spp. isolated on phytopathogenic bacteria. Appl. Environ. Microbiol. 66:2365-2371.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 2365-2371
    • Jurkevitch, E.1    Minz, D.2    Ramati, B.3    Barel, G.4
  • 18
    • 4644325724 scopus 로고    scopus 로고
    • Characterization of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridization
    • Kobabe, S., D. Wagner, and E.-V. Pfeiffer. 2004. Characterization of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridization. FEMS Microbiol. Ecol. 50:13-23.
    • (2004) FEMS Microbiol. Ecol , vol.50 , pp. 13-23
    • Kobabe, S.1    Wagner, D.2    Pfeiffer, E.-V.3
  • 19
    • 36649011715 scopus 로고    scopus 로고
    • The search for hunters: Culture-dependent and -independent methods for analysis of Bdellovibrio and like organisms
    • E. Jurkevitch ed, Springer-Verlag, Berlin, Germany
    • Koval, S. F. 2006. The search for hunters: culture-dependent and -independent methods for analysis of Bdellovibrio and like organisms, p. 191-211. In E. Jurkevitch (ed.), Predatory prokaryotes: biology, ecology and evolution. Springer-Verlag, Berlin, Germany.
    • (2006) Predatory prokaryotes: Biology, ecology and evolution , pp. 191-211
    • Koval, S.F.1
  • 20
    • 0025731018 scopus 로고
    • Effect of paracrystalline protein surface layers on predation by Bdellovibrio bacteriovorus
    • Koval, S. F., and S. H. Hynes. 1991. Effect of paracrystalline protein surface layers on predation by Bdellovibrio bacteriovorus. J. Bacteriol. 173:2244-2249.
    • (1991) J. Bacteriol , vol.173 , pp. 2244-2249
    • Koval, S.F.1    Hynes, S.H.2
  • 21
    • 33947371287 scopus 로고    scopus 로고
    • Improved fluorescent in situ hybridization method for detection of bacteria from activated sludge and river water by using DNA molecular beacons and flow cytometry
    • Lenaerts, J., H. M. Lappin-Scott, and J. Porter. 2007. Improved fluorescent in situ hybridization method for detection of bacteria from activated sludge and river water by using DNA molecular beacons and flow cytometry. Appl. Environ. Microbiol. 73:2020-2023.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2020-2023
    • Lenaerts, J.1    Lappin-Scott, H.M.2    Porter, J.3
  • 22
    • 12844278756 scopus 로고    scopus 로고
    • Detection of Acidithiobacillus ferrooxidans in acid mine drainage environments using fluorescent in situ hybridization (FISH)
    • Mahmoud, K. K., L. G. Leduc, and G. D. Ferroni. 2005. Detection of Acidithiobacillus ferrooxidans in acid mine drainage environments using fluorescent in situ hybridization (FISH). J. Microbiol. Methods 61:33-45.
    • (2005) J. Microbiol. Methods , vol.61 , pp. 33-45
    • Mahmoud, K.K.1    Leduc, L.G.2    Ferroni, G.D.3
  • 23
    • 85017003882 scopus 로고    scopus 로고
    • Biocontrol of multidrug resistant
    • Ph.D. thesis. University of Ulster, Ulster, Northern Ireland
    • McNeely, D. 2004. Biocontrol of multidrug resistant Burkholderia cepacia. Ph.D. thesis. University of Ulster, Ulster, Northern Ireland.
    • (2004) Burkholderia cepacia
    • McNeely, D.1
  • 24
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094-3101.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 25
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • J. Paul ed, Academic Press Ltd, London, United Kingdom
    • Pernthaler, J., F. O. Glöckner, W. Schönhuber, and R. Amann. 2001. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes, p. 207-226. In J. Paul (ed.), Methods in microbiology: marine microbiology, vol. 30. Academic Press Ltd., London, United Kingdom.
    • (2001) Methods in microbiology: Marine microbiology , vol.30 , pp. 207-226
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 26
    • 0141524121 scopus 로고    scopus 로고
    • Small eats big: Ecology and diversity of Bdellovibrio and like organisms, and their dynamics in predator-prey interactions
    • Shemesh, Y., Y. Davidov, S. F. Koval, and E. Jurkevitch. 2003. Small eats big: ecology and diversity of Bdellovibrio and like organisms, and their dynamics in predator-prey interactions. Agronomie 23:433-439.
    • (2003) Agronomie , vol.23 , pp. 433-439
    • Shemesh, Y.1    Davidov, Y.2    Koval, S.F.3    Jurkevitch, E.4
  • 27
    • 36648998667 scopus 로고
    • The genus Bdellovibrio
    • M. P. Starr, H. Stolp, H. G. Truper, A. Balows, and H. G. Schlegel ed, Springer-Verlag, New York, NY
    • Stolp, H. 1981. The genus Bdellovibrio, p. 618-629. In M. P. Starr, H. Stolp, H. G. Truper, A. Balows, and H. G. Schlegel (ed.), The prokaryotes: a handbook on habitats, isolation, and identification of bacteria. Springer-Verlag, New York, NY.
    • (1981) The prokaryotes: A handbook on habitats, isolation, and identification of bacteria , pp. 618-629
    • Stolp, H.1
  • 28
    • 0029070337 scopus 로고
    • Flow cytometric analysis of activated sludge with rRNA-targeted probes
    • Wallner, G., R. Amann, and W. Beisker. 1995. Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl. Environ. Microbiol. 61:1859-1866.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 1859-1866
    • Wallner, G.1    Amann, R.2    Beisker, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.