Discovery of motifs in promoters of coregulated genes

Methods in Molecular Biology

Volumn 395, Issue , 2007, Pages 329-347

  Sand, Olivier ^a   Van Helden, Jacques ^a  

^a NONE

Author keywords

Coexpressed genes; Pattern discovery; Transcriptional regulation

Indexed keywords

ARTICLE; COMPUTER INTERFACE; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; INTERNET; PROMOTER REGION;

GENE EXPRESSION REGULATION; INTERNET; PROMOTER REGIONS (GENETICS); TRANSCRIPTION, GENETIC; USER-COMPUTER INTERFACE;

BACTERIA (MICROORGANISMS);

EID: 36549062896     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-514-8:329     Document Type: Article

References (5)

1. van Helden, J., Andre, B., and Collado-Vides, J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842.
2. van Helden, J., Rios, A. F., and Collado-Vides, J. (2000) Discovering regulatory elements in non-coding sequences by analysis of spaced dyads. Nucleic Acids Res 28, 1808-1818.
3. Gasch, A. P., Spellman, P. T., Kao, C. M., et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell. 11, 4241-4257.
4. van Helden, J. (2003) Regulatory sequence analysis tools. Nucleic Acids Res. 31, 3593-3596.
5. van Helden, J., Andre, B., and Collado-Vides, J. (2000) A web site for the computational analysis of yeast regulatory sequences. Yeast 16, 177-187.