메뉴 건너뛰기




Volumn 4, Issue 4, 2007, Pages 473-480

Discriminating between strains of Escherichia coli using pulsed-field gel electrophoresis and BOX-PCR

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PRIMER BOXA1; PRIMER DNA; UNCLASSIFIED DRUG;

EID: 36549044898     PISSN: 15353141     EISSN: None     Source Type: Journal    
DOI: 10.1089/fpd.2007.0038     Document Type: Article
Times cited : (12)

References (22)
  • 1
    • 7044246166 scopus 로고    scopus 로고
    • Applicability of Rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella
    • Alves, A., I. Henriques, S. Fragoeiro, C. Santos, A.J.L. Phillips, and A. Correia. 2004. Applicability of Rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella. Plant Pathol. 53:629-634.
    • (2004) Plant Pathol , vol.53 , pp. 629-634
    • Alves, A.1    Henriques, I.2    Fragoeiro, S.3    Santos, C.4    Phillips, A.J.L.5    Correia, A.6
  • 2
    • 0037762705 scopus 로고    scopus 로고
    • Non-O157 verotoxin-producing Escherichia coli: A problem, paradox, and paradigm
    • Bettelheim, K.A. 2003. Non-O157 verotoxin-producing Escherichia coli: A problem, paradox, and paradigm. Exp Biol Med. 228:333-344.
    • (2003) Exp Biol Med , vol.228 , pp. 333-344
    • Bettelheim, K.A.1
  • 3
    • 0037337209 scopus 로고    scopus 로고
    • Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal Escherichia coli from humans and animals
    • Carson, C.A., B.L. Shear, M.R. Ellersieck, and J.D. Schnell. 2003. Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal Escherichia coli from humans and animals. Appl Environ Microbiol. 69:1836-1839.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1836-1839
    • Carson, C.A.1    Shear, B.L.2    Ellersieck, M.R.3    Schnell, J.D.4
  • 4
    • 0034130242 scopus 로고    scopus 로고
    • Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources
    • Dombek, P.E., L.K. Johnson, S.T. Zimmerley, and M.J. Sadowsky. 2000. Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl Environ Microbiol. 66:2572-2577.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2572-2577
    • Dombek, P.E.1    Johnson, L.K.2    Zimmerley, S.T.3    Sadowsky, M.J.4
  • 5
    • 0030856706 scopus 로고    scopus 로고
    • Rapid pulsed-field gel electrophoresis protocol for typing of Escherichia coli O157:H7 and other Gram-negative organisms in 1 day
    • Gautom, R.K. 1997. Rapid pulsed-field gel electrophoresis protocol for typing of Escherichia coli O157:H7 and other Gram-negative organisms in 1 day. J Clin Microbiol. 35:297-298.
    • (1997) J Clin Microbiol , vol.35 , pp. 297-298
    • Gautom, R.K.1
  • 6
    • 0036272875 scopus 로고    scopus 로고
    • Development of a procedure for discriminating among Escherichia coli isolates from animal and human sources
    • Guan, S., R. Xu, S. Chen, J. Odumeru, and C. Gyles. 2002. Development of a procedure for discriminating among Escherichia coli isolates from animal and human sources. Appl Environ Microbiol. 68:2690-2698.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2690-2698
    • Guan, S.1    Xu, R.2    Chen, S.3    Odumeru, J.4    Gyles, C.5
  • 7
    • 0344406819 scopus 로고    scopus 로고
    • Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, Rep-PCR, PFGE, ribotyping and AFLP
    • Hahm, B., Y. Maldonado, E. Schreiberc, A.K. Bhuniab, and C.H. Nakatsu. 2003. Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, Rep-PCR, PFGE, ribotyping and AFLP. J Microbiol Methods 53:387-399.
    • (2003) J Microbiol Methods , vol.53 , pp. 387-399
    • Hahm, B.1    Maldonado, Y.2    Schreiberc, E.3    Bhuniab, A.K.4    Nakatsu, C.H.5
  • 8
    • 0034459857 scopus 로고    scopus 로고
    • Methods available for the sub-typing of Escherichia coli O157
    • Hopkins, K.L. and A.C. Hilton. 2000. Methods available for the sub-typing of Escherichia coli O157. World J Microbiol Biotechnol. 16:741-748.
    • (2000) World J Microbiol Biotechnol , vol.16 , pp. 741-748
    • Hopkins, K.L.1    Hilton, A.C.2
  • 9
    • 0034095046 scopus 로고    scopus 로고
    • Improved repetitive-element PCR fingerprinting for resolving pathogenic and nonpathogenic phylogenetic groups within Escherichia coli
    • Johnson, J.R. and T.T. O'Bryan. 2000. Improved repetitive-element PCR fingerprinting for resolving pathogenic and nonpathogenic phylogenetic groups within Escherichia coli. Clin Diag Lab Immunol. 7:265-273.
    • (2000) Clin Diag Lab Immunol , vol.7 , pp. 265-273
    • Johnson, J.R.1    O'Bryan, T.T.2
  • 10
    • 4143115645 scopus 로고    scopus 로고
    • Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution
    • Johnson, L.A.K., M.B. Brown, E.A. Carruthers, J.A. Ferguson, P.E. Dombek, and M.J. Sadowsky. 2004. Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution. Appl Environ Microbiol. 70:4478-4485.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4478-4485
    • Johnson, L.A.K.1    Brown, M.B.2    Carruthers, E.A.3    Ferguson, J.A.4    Dombek, P.E.5    Sadowsky, M.J.6
  • 11
    • 0031984818 scopus 로고    scopus 로고
    • Repetitive sequence-based PCR versus pulsed-field gel electrophoresis for typing of Enterococcus faecalis at the subspecies level
    • Malathum, K., K.V. Singh, G.M. Weinstock, and B.E. Murray. 1998. Repetitive sequence-based PCR versus pulsed-field gel electrophoresis for typing of Enterococcus faecalis at the subspecies level. J Clin Microbiol. 36:211-215.
    • (1998) J Clin Microbiol , vol.36 , pp. 211-215
    • Malathum, K.1    Singh, K.V.2    Weinstock, G.M.3    Murray, B.E.4
  • 13
    • 20044369028 scopus 로고    scopus 로고
    • Comparison of Escherichia coli isolates from humans, food, and farm and companion animals for presence of Shiga toxin-producing E. coli virulence markers
    • Murinda, S.E., L.T. Nguyen, L. Landers, F.A. Draughon, A.G. Mathew, J.S. Hogan, K.L. Smith, D.D. Hancock, and S.P. Oliver. 2004. Comparison of Escherichia coli isolates from humans, food, and farm and companion animals for presence of Shiga toxin-producing E. coli virulence markers. Foodborne Pathog Dis. 1:178-184.
    • (2004) Foodborne Pathog Dis , vol.1 , pp. 178-184
    • Murinda, S.E.1    Nguyen, L.T.2    Landers, L.3    Draughon, F.A.4    Mathew, A.G.5    Hogan, J.S.6    Smith, K.L.7    Hancock, D.D.8    Oliver, S.P.9
  • 14
    • 0037371268 scopus 로고    scopus 로고
    • Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host
    • Naylor, S.W., J.C. Low, T.E. Besser, A. Mahajan, G.J. Gunn, M.C. Pearce, I.J. McKendrick, D.G.E. Smith, and D.L. Gally. 2003. Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host. Infect Immun. 71:1505-1512.
    • (2003) Infect Immun , vol.71 , pp. 1505-1512
    • Naylor, S.W.1    Low, J.C.2    Besser, T.E.3    Mahajan, A.4    Gunn, G.J.5    Pearce, M.C.6    McKendrick, I.J.7    Smith, D.G.E.8    Gally, D.L.9
  • 15
    • 2342561079 scopus 로고    scopus 로고
    • Rapid detection and quantification of E. coli O157/O26/O111 in minced beef by real-time PCR
    • O'Hanlon, K.A., T.M.G. Catarame, G. Duffy, I.S. Blair, and D.A. McDowell. 2004. Rapid detection and quantification of E. coli O157/O26/O111 in minced beef by real-time PCR. J Appl Microbiol. 96:1013-1023.
    • (2004) J Appl Microbiol , vol.96 , pp. 1013-1023
    • O'Hanlon, K.A.1    Catarame, T.M.G.2    Duffy, G.3    Blair, I.S.4    McDowell, D.A.5
  • 16
    • 0032904916 scopus 로고    scopus 로고
    • Miniseries: Principles and applications of methods for DNA-Based typing of microbial organisms
    • Olive, D.M. and P. Bean. 1999. Miniseries: principles and applications of methods for DNA-Based typing of microbial organisms. J Clin Microbiol. 37:1661-1669.
    • (1999) J Clin Microbiol , vol.37 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 17
    • 0036391208 scopus 로고    scopus 로고
    • Genetic relatedness of Escherichia coli O157:H7 strains isolated from pigs determined by random amplification of box DNA sequences
    • Osek, J.K. 2002. Genetic relatedness of Escherichia coli O157:H7 strains isolated from pigs determined by random amplification of box DNA sequences. Bull Vet Inst Pulawy. 46:3-10.
    • (2002) Bull Vet Inst Pulawy , vol.46 , pp. 3-10
    • Osek, J.K.1
  • 18
    • 0032974775 scopus 로고    scopus 로고
    • Discriminant analysis of ribotype profiles of Escherichia coli for differentiating human and nonhuman sources of fecal pollution
    • Parveen, S., K.M. Portier, K. Robinson, L. Edmiston, and M.L. Tamplin. 1999. Discriminant analysis of ribotype profiles of Escherichia coli for differentiating human and nonhuman sources of fecal pollution. Appl Environ Microbiol. 65:3142-3147.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3142-3147
    • Parveen, S.1    Portier, K.M.2    Robinson, K.3    Edmiston, L.4    Tamplin, M.L.5
  • 19
    • 0002924916 scopus 로고    scopus 로고
    • Characterization and Classification of Microbes by Rep-PCR Genomic Fingerprinting and Computer Assisted Pattern Analysis
    • Caetano-Anollés G. and P. M. Gresshoff eds, J. Willey and Sons, New York, NY. pp
    • Rademaker, J.L.W. and F.J. Bruijn. 1997. Characterization and Classification of Microbes by Rep-PCR Genomic Fingerprinting and Computer Assisted Pattern Analysis. In: DNA Markers: Protocols, Applications and Overviews. Caetano-Anollés G. and P. M. Gresshoff (eds.), J. Willey and Sons, New York, NY. pp. 151-171.
    • (1997) DNA Markers: Protocols, Applications and Overviews , pp. 151-171
    • Rademaker, J.L.W.1    Bruijn, F.J.2
  • 20
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing
    • Tenover, F.C., R.D. Arbeit, R.V. Goering, P.A. Mickelsen, B.E. Murray, D.H. Persing, and B. Swaminathan. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing. J Clin Microbiol. 33:2233-2239.
    • (1995) J Clin Microbiol , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3    Mickelsen, P.A.4    Murray, B.E.5    Persing, D.H.6    Swaminathan, B.7
  • 21
    • 0029865391 scopus 로고    scopus 로고
    • Novel BOX repeat PCR assay for high-resolution typing of Streptococcus pneumoniae strains
    • van Belkum, A., M. Sluijter, R. De Groot, H. Verbrugh, and P.W.M. Hermans. 1996. Novel BOX repeat PCR assay for high-resolution typing of Streptococcus pneumoniae strains. J Clin Microbiol. 34:1176-1179.
    • (1996) J Clin Microbiol , vol.34 , pp. 1176-1179
    • van Belkum, A.1    Sluijter, M.2    De Groot, R.3    Verbrugh, H.4    Hermans, P.W.M.5
  • 22
    • 0029893699 scopus 로고    scopus 로고
    • A comparative study of different PCR based DNA fingerprinting techniques for typing of the Acinetobacter calcoaceticus-A. baumannii complex
    • Vila, J., M.A. Marcos, and M.T. Jimenez de Anta. 1996. A comparative study of different PCR based DNA fingerprinting techniques for typing of the Acinetobacter calcoaceticus-A. baumannii complex. J Med Microbiol. 44:482-489.
    • (1996) J Med Microbiol , vol.44 , pp. 482-489
    • Vila, J.1    Marcos, M.A.2    Jimenez de Anta, M.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.