-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F., Zardoya R., and Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21 (2005) 2104-2105
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
33644782643
-
The new higher-level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl S.M., Simpson A.G.B., Farmer M.A., Andersen R.A., Anderson O.R., Barta J.R., Bowser S.S., Brugerolle G., Fensome R.A., Frederico S., James T.Y., Karpov S., Kugrens P., Krug J., Lane C.E., Lewis L.A., Lodge J., Lynn H.D., Mann D.G., McCourt R.M., Mendoza L., Moestrup Ø., Mozley-Standridge S.E., Nerad T.A., Shearer C.A., Smirnov A.V., Spiegel F.W., and Taylor F.J.R. The new higher-level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 52 (2005) 399-451
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.B.2
Farmer, M.A.3
Andersen, R.A.4
Anderson, O.R.5
Barta, J.R.6
Bowser, S.S.7
Brugerolle, G.8
Fensome, R.A.9
Frederico, S.10
James, T.Y.11
Karpov, S.12
Kugrens, P.13
Krug, J.14
Lane, C.E.15
Lewis, L.A.16
Lodge, J.17
Lynn, H.D.18
Mann, D.G.19
McCourt, R.M.20
Mendoza, L.21
Moestrup, Ø.22
Mozley-Standridge, S.E.23
Nerad, T.A.24
Shearer, C.A.25
Smirnov, A.V.26
Spiegel, F.W.27
Taylor, F.J.R.28
more..
-
3
-
-
0037228110
-
Platyamoeba nucleolilateralis n. sp. from the Chesapeake Bay Region
-
Anderson O.R., Nerad T.A., and Cole J.C. Platyamoeba nucleolilateralis n. sp. from the Chesapeake Bay Region. J Eukaryot Microbiol 50 (2003) 57-60
-
(2003)
J Eukaryot Microbiol
, vol.50
, pp. 57-60
-
-
Anderson, O.R.1
Nerad, T.A.2
Cole, J.C.3
-
4
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf S.L., Roger A.J., Wenk-Siefert I., and Doolittle W.F. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290 (2000) 972-977
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
5
-
-
0036208071
-
The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa
-
Cavalier-Smith T. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. Int J Syst Evol Microbiol 52 (2002) 297-354
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 297-354
-
-
Cavalier-Smith, T.1
-
6
-
-
84939590207
-
-
Eddy SR (2001) HMMER: Profile hidden markov models for biological sequence analysis 〈http://hmmer.wustl.edu/〉.
-
-
-
-
7
-
-
36349024940
-
Amöben der Famillie Stereomyxidae
-
Grell K.G. Amöben der Famillie Stereomyxidae. Arch Protistenkd 109 (1966) 147-154
-
(1966)
Arch Protistenkd
, vol.109
, pp. 147-154
-
-
Grell, K.G.1
-
8
-
-
0005606442
-
Der Formwechsel des plasmodialen Rhizopoden Thalassomyxa australis n. g., n. sp
-
Grell K.G. Der Formwechsel des plasmodialen Rhizopoden Thalassomyxa australis n. g., n. sp. Protistologica 21 (1985) 215-233
-
(1985)
Protistologica
, vol.21
, pp. 215-233
-
-
Grell, K.G.1
-
9
-
-
36348977726
-
Corallomyxa multipara n. sp., ein plasmodialer Rhizopode von der Ostaustralischen Küste
-
Grell K.G. Corallomyxa multipara n. sp., ein plasmodialer Rhizopode von der Ostaustralischen Küste. Arch Protistenkd 136 (1988) 117-138
-
(1988)
Arch Protistenkd
, vol.136
, pp. 117-138
-
-
Grell, K.G.1
-
10
-
-
0345667152
-
Corallomyxa nipponica n. sp. and the phylogeny of plasmodial protists
-
Grell K.G. Corallomyxa nipponica n. sp. and the phylogeny of plasmodial protists. Arch Protistenkd 140 (1991) 303-320
-
(1991)
Arch Protistenkd
, vol.140
, pp. 303-320
-
-
Grell, K.G.1
-
11
-
-
0007362416
-
Ultrastruktur mariner Amöben IV. Corallomyxa chattoni n. sp
-
Grell K.G., and Benwits G. Ultrastruktur mariner Amöben IV. Corallomyxa chattoni n. sp. Arch Protistenkd 120 (1978) 287-300
-
(1978)
Arch Protistenkd
, vol.120
, pp. 287-300
-
-
Grell, K.G.1
Benwits, G.2
-
12
-
-
24744471435
-
Structural and functional implications of an unusual Foraminiferal ß-Tubulin
-
Habura A., Wegener L., Travis J.L., and Bowser S.S. Structural and functional implications of an unusual Foraminiferal ß-Tubulin. Mol Biol Evol 22 (2005) 2000-2009
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2000-2009
-
-
Habura, A.1
Wegener, L.2
Travis, J.L.3
Bowser, S.S.4
-
13
-
-
0035861456
-
Evolution-Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck J.P., Ronquist F., Nielsen R., and Bollback J.P. Evolution-Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294 (2001) 2310-2314
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
14
-
-
9744238179
-
Multigene evidence for close evolutionary relationships between Gromia and Foraminifera
-
Longet D., Burki F., Flakowski J., Berney C., Polet S., Fahrni J., and Pawlowski J. Multigene evidence for close evolutionary relationships between Gromia and Foraminifera. Acta Protozool 43 (2004) 303-311
-
(2004)
Acta Protozool
, vol.43
, pp. 303-311
-
-
Longet, D.1
Burki, F.2
Flakowski, J.3
Berney, C.4
Polet, S.5
Fahrni, J.6
Pawlowski, J.7
-
16
-
-
0024241467
-
The characterization of enzymatically amplified eukaryotes 16S-like ribosomal RNA coding regions
-
Medlin L., Elwood H.J., Stickel S., and Sogin M.L. The characterization of enzymatically amplified eukaryotes 16S-like ribosomal RNA coding regions. Gene 71 (1988) 491-500
-
(1988)
Gene
, vol.71
, pp. 491-500
-
-
Medlin, L.1
Elwood, H.J.2
Stickel, S.3
Sogin, M.L.4
-
17
-
-
0002710579
-
A quantitative protargol stain (QPS) for ciliates: method description and test of its quantitative nature
-
Montagnes D.J.S., and Lynn D.H. A quantitative protargol stain (QPS) for ciliates: method description and test of its quantitative nature. Mar Microb Food Webs 2 (1987) 83-93
-
(1987)
Mar Microb Food Webs
, vol.2
, pp. 83-93
-
-
Montagnes, D.J.S.1
Lynn, D.H.2
-
18
-
-
2542512417
-
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
-
Nikolaev S.I., Berney C., Fahrni J., Bolivar I., Polet S., Mylnikov A.P., Aleshin V.V., Petrov N.B., and Pawlowski J. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci USA 101 (2004) 8066-8071
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8066-8071
-
-
Nikolaev, S.I.1
Berney, C.2
Fahrni, J.3
Bolivar, I.4
Polet, S.5
Mylnikov, A.P.6
Aleshin, V.V.7
Petrov, N.B.8
Pawlowski, J.9
-
19
-
-
0042352477
-
Gymnophrys cometa and Lecythium sp. are core Cercozoa: evolutionary implications
-
Nikolaev S.I., Berney C., Fahrni J., Mylnikov A.P., Aleshin V.V., Petrov N.B., and Pawlowski J. Gymnophrys cometa and Lecythium sp. are core Cercozoa: evolutionary implications. Acta Protozool 42 (2003) 183-190
-
(2003)
Acta Protozool
, vol.42
, pp. 183-190
-
-
Nikolaev, S.I.1
Berney, C.2
Fahrni, J.3
Mylnikov, A.P.4
Aleshin, V.V.5
Petrov, N.B.6
Pawlowski, J.7
-
20
-
-
33745307797
-
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa
-
Nikolaev S.I., Berney C., Petrov N.B., Mylnikov A.P., Fahrni J.F., and Pawlowski J. Phylogenetic position of Multicilia marina and the evolution of Amoebozoa. Int J Syst Evol Microbiol 56 (2006) 1449-1458
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1449-1458
-
-
Nikolaev, S.I.1
Berney, C.2
Petrov, N.B.3
Mylnikov, A.P.4
Fahrni, J.F.5
Pawlowski, J.6
-
21
-
-
84939590208
-
-
Nylander JA (2004) MrModelTest. Pp. Distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala
-
-
-
-
22
-
-
0007673636
-
A revised classification of the Gymnamoebia (Protozoa: Sarcodina)
-
Page F.C. A revised classification of the Gymnamoebia (Protozoa: Sarcodina). Zool J Linn Soc 58 (1976) 61-77
-
(1976)
Zool J Linn Soc
, vol.58
, pp. 61-77
-
-
Page, F.C.1
-
23
-
-
0001344330
-
The classification of 'naked' amoebae (Phylum Rhizopoda)
-
Page F.C. The classification of 'naked' amoebae (Phylum Rhizopoda). Arch Protistenkd 133 (1987) 199-217
-
(1987)
Arch Protistenkd
, vol.133
, pp. 199-217
-
-
Page, F.C.1
-
24
-
-
0002255026
-
The Heterolobosea (Sarcodina: Rhizopoda), a new class uniting the Schizopyrenida and the Acrasidae (Acrasida)
-
Page F.C., and Blanton R.L. The Heterolobosea (Sarcodina: Rhizopoda), a new class uniting the Schizopyrenida and the Acrasidae (Acrasida). Protistologica 21 (1985) 121-132
-
(1985)
Protistologica
, vol.21
, pp. 121-132
-
-
Page, F.C.1
Blanton, R.L.2
-
25
-
-
33845985995
-
Evaluating support for the current classification of eukaryotic diversity
-
Parfrey L.W., Barbero E., Lasser E., Dunthorn M., Bhattacharya D., Patterson D.J., and Katz L.A. Evaluating support for the current classification of eukaryotic diversity. PLoS Genet 22 2(12) (2006) e220
-
(2006)
PLoS Genet
, vol.22
, Issue.2 12
-
-
Parfrey, L.W.1
Barbero, E.2
Lasser, E.3
Dunthorn, M.4
Bhattacharya, D.5
Patterson, D.J.6
Katz, L.A.7
-
26
-
-
0032744297
-
The diversity of eukaryotes
-
Patterson D.J. The diversity of eukaryotes. Am Nat 154 (1999) 96-124
-
(1999)
Am Nat
, vol.154
, pp. 96-124
-
-
Patterson, D.J.1
-
27
-
-
9744269825
-
Phylum Haplosporidia
-
Lee J.J., Leedale G.F., and Bradbury P. (Eds), Lawrence, Kansas
-
Perkins F.O. Phylum Haplosporidia. In: Lee J.J., Leedale G.F., and Bradbury P. (Eds). An Illustrated Guide to the Protozoa. 2nd Ed, Society of Protozoologists (2000), Lawrence, Kansas 1328-1341
-
(2000)
An Illustrated Guide to the Protozoa. 2nd Ed, Society of Protozoologists
, pp. 1328-1341
-
-
Perkins, F.O.1
-
28
-
-
84939590209
-
-
Rambaut A (1996) Se-Al: Sequence Alignment Editor. Available at 〈http://evolve.zoo.ox.ac.uk/〉
-
-
-
-
29
-
-
11244337362
-
Molecular phylogeny of the Haplosporidia based on two independent gene sequences
-
Reece K.S., Siddall M.E., Stokes N.A., and Burreson E.M. Molecular phylogeny of the Haplosporidia based on two independent gene sequences. J Parasitol 90 (2004) 1111-1122
-
(2004)
J Parasitol
, vol.90
, pp. 1111-1122
-
-
Reece, K.S.1
Siddall, M.E.2
Stokes, N.A.3
Burreson, E.M.4
-
30
-
-
0013257468
-
The Naked Ramicristate Amoebae (Gymnamoebae)
-
Lee J.J., Leedale G.F., and Bradbury P. (Eds), Lawrence, Kansas
-
Rogerson A., and Patterson D.J. The Naked Ramicristate Amoebae (Gymnamoebae). In: Lee J.J., Leedale G.F., and Bradbury P. (Eds). An Illustrated Guide to the Protozoa, 2nd Ed, Society of Protozoologists (2000), Lawrence, Kansas 1023-1052
-
(2000)
An Illustrated Guide to the Protozoa, 2nd Ed, Society of Protozoologists
, pp. 1023-1052
-
-
Rogerson, A.1
Patterson, D.J.2
-
31
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
32
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16 (1999) 1114-1116
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
33
-
-
9244258872
-
Guide to the methods of study and identification of soil gymnamoebae
-
Smirnov A.V., and Brown S. Guide to the methods of study and identification of soil gymnamoebae. Protistology 3 (2004) 148-190
-
(2004)
Protistology
, vol.3
, pp. 148-190
-
-
Smirnov, A.V.1
Brown, S.2
-
34
-
-
22744435955
-
Molecular phylogeny and classification of the lobose amoebae
-
Smirnov A., Nassonova E., Berney C., Fahrni J., Bolivar I., and Pawlowski J. Molecular phylogeny and classification of the lobose amoebae. Protist 156 (2005) 129-142
-
(2005)
Protist
, vol.156
, pp. 129-142
-
-
Smirnov, A.1
Nassonova, E.2
Berney, C.3
Fahrni, J.4
Bolivar, I.5
Pawlowski, J.6
-
35
-
-
0036739159
-
Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci
-
Snoeyenbos-West O.L.O., Salcedo T., McManus G.B., and Katz L.A. Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci. Int J Syst Evol Microbiol 52 (2002) 1901-1913
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1901-1913
-
-
Snoeyenbos-West, O.L.O.1
Salcedo, T.2
McManus, G.B.3
Katz, L.A.4
-
36
-
-
14644397888
-
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis A., Ludwig T., and Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21 (2005) 456-463
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
37
-
-
26844521242
-
RAxML-OMP: An efficient program for phylogenetic inference on SMPs
-
Stamatakis A., Ott M., and Ludwig T. RAxML-OMP: An efficient program for phylogenetic inference on SMPs. Parallel Comput Technol 3606 (2005) 288-302
-
(2005)
Parallel Comput Technol
, vol.3606
, pp. 288-302
-
-
Stamatakis, A.1
Ott, M.2
Ludwig, T.3
-
38
-
-
0027968068
-
Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
40
-
-
0034554835
-
Comparative analysis of more than 3,000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
-
Wuyts J., De Rijk P., Van de Peer Y., Pison G., Rousseeuw P., and De Wachter R. Comparative analysis of more than 3,000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28 (2000) 4698-4708
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4698-4708
-
-
Wuyts, J.1
De Rijk, P.2
Van de Peer, Y.3
Pison, G.4
Rousseeuw, P.5
De Wachter, R.6
-
41
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31 (2003) 3406-3415
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|