Stepping into the third dimension

Journal of Neuroscience

Volumn 27, Issue 47, 2007, Pages 12757-12760

  Feng, David ^a   Marshburn, David ^a   Jen, Dennis ^d   Weinberg, Richard J ^b,c   Taylor II, Russell M ^a   Burette, Alain ^b  

^a Brooks Computer Science Building   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

^c UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^d MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

3D reconstruction; Calcium pump; Confocal microscopy; Neurons; Software; Visualization

Indexed keywords

BREAST CANCER; CANCER CELL CULTURE; COMPUTER AIDED DESIGN; DATA ANALYSIS; HUMAN; IMAGE PROCESSING; IMAGE QUALITY; KEYBOARD; MICROSCOPY; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; REVIEW;

ANIMALS; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MICROSCOPY, CONFOCAL; SOFTWARE;

EID: 36348991509     PISSN: 02706474     EISSN: 02706474     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.2846-07.2007     Document Type: Review

References (13)

1. Chow SK, Hakozaki H, Price DL, MacLean NA, Deerinck TJ, Bouwer JC, Martone ME, Peltier ST, Ellisman MH (2006) Automated microscopy system for mosaic acquisition and processing. J Microsc 222:76-84.
2. Clendenon JL, Phillips CL, Sandoval RM, Fang S, Dunn KW (2002) Voxx: a PC-based, near real-time volume rendering system for biological microscopy. Am J Physiol Cell Physiol 282:C213-C218.
3. Dennis J, Peter P, Jonathan R, Christopher W, Russell II MT, Alain B, Richard W (2004) ImageSurfer: a tool for visualizing correlations between two volume scalar fields. IEEE Visualization 2004:529-536.
4. Giepmans BN, Adams SR, Ellisman MH, Tsien RY (2006) The fluorescent toolbox for assessing protein location and function. Science 312:217-224.
5. Horton AC, Racz B, Monson EE, Lin AL, Weinberg RJ, Ehlers MD (2005) Polarized secretory trafficking directs cargo for asymmetric dendrite growth and morphogenesis. Neuron 48:757-771.
6. Kniss J, Kindlmann G, Hansen C (2001) Interactive volume rendering using multidimensional transfer functions and direct manipulation widgets. IEEE Visualization 2001:255-262.
7. Levoy M (1988) Display of surfaces from volume data. IEEE Comput Graph Appl 8:29-37.
8. Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH (2003) The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1:379-395.
9. Martone ME, Gupta A, Ellisman MH (2004) E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci 7:467-472.
10. Pham DL, Xu C, Prince JL (2000) Current methods in medical image segmentation. Annu Rev Biomed Eng 2:315-337.
11. Rueden C, Eliceiri KW, White JG (2004) VisBio: a computational tool for visualization of multidimensional biological image data. Traffic 5:411-417.
12. Willig KI, Kellner RR, Medda R, Hein B, Jakobs S, Hell SW (2006) Nanoscale resolution in GFP-based microscopy. Nat Methods 3:721-723.
13. Zhang S, Demiralp C, Keefe DF, da Silva M, Laidlaw DH, Greenberg BD, Basser PJ, Chiocca EA, Pierpaoli C, Deisboeck TS (2001) An immersive virtual environment for DT-MRI volume visualization applications: a case study. IEEE Visualization 2001:437-440.