Robotized incubation system for monitoring gases (O2, NO, N2O N2) in denitrifying cultures

Journal of Microbiological Methods

Volumn 71, Issue 3, 2007, Pages 202-211

  Molstad, Lars ^a   Dörsch, Peter ^a   Bakken, Lars R ^a  

^a NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

Author keywords

Denitrification; Genome; Phenomic approaches; Robotization

Indexed keywords

NITRIC OXIDE; NITROGEN; OXYGEN;

ARTICLE; BACTERIUM CULTURE; CHEMOLUMINESCENCE; DENITRIFYING BACTERIUM; GENE EXPRESSION; GLACIAL MASS BALANCE; NONHUMAN; PARACOCCUS DENITRIFICANS; PRIORITY JOURNAL; RHIZOBIUM RADIOBACTER;

BACTERIA; EQUIPMENT DESIGN; GASES; NITROGEN; NITROUS OXIDE; OXYGEN; ROBOTICS;

AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS); PARACOCCUS DENITRIFICANS;

EID: 36348984528     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2007.08.011     Document Type: Article

References (23)

1. Aakra A., Hesselsoe M., and Bakken L.R. Surface attachment of ammonia-oxidizing bacteria in soil. Microbial Ecology 39 (2000) 222-235
2. Baker S.C., Ferguson S.J., Ludwig B., Page M.D., Richter O.M.H., and van Spanning R.J.M. Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility. Microbiology and Molecular Biology Reviews 62 (1998) 1046-1078
3. Butler C.S., and Richardson D.J. The emerging molecular structure of the nitrogen cycle: an introduction to the proceedings of the 10th annual N-cycle meeting. Biochemical Society Transactions 33 (2005) 113-118
4. Choi P.S., Naal Z., Moore C., Casado-Rivera E., Abruna H.D., Helmann J.D., and Shapleigh J.P. Assessing the impact of denitrifier-produced nitric oxide on other bacteria. Applied and Environmental Microbiology 72 (2006) 2200-2205
5. Dudley A.M., Janse D.M., Tanay A., Shamir R., and Church G.M. A global view of pleiotropy and phenotypically derived gene function in yeast. Molecular Systems Biology (2005) 1-11 10.1038/msb4100004 Article number: 2005.0001
6. Fernandez-Ricaud L., Warringer J., Ericson E., Glaab K., Davidsson P., Nilsson F., Kemp G.J.L., Nerman O., and Blomberg A. PROPHESY - a yeast phenome database, update 2006. Nucleic Acid Research 35 (2006) D463-D467
7. Haraya K., and Hwang S.T. Permeation of oxygen, argon and nitrogen through polymer membranes. Journal of Membrane Science 71 (1992) 13-27
8. 2O production and reduction. Soil Biology & Biochemistry 34 (2002) 1797-1806
9. Kester R.A., Wijlhuizen A.G., Duyts H., and Laanbroek H.J. Chemoluminiscence analysis of nitric oxide in small-volume samples by a modified injection method. Biology and Fertility of Soils 18 (1994) 260-262
10. Kunak M., Kucera I., and van Spanning R.J.M. Nitric oxide oscillations in Paracoccus denitrificans: the effects of environmental factors and of segregating nitrite reductase and nitric oxide reductase into separate cells. Archives of Biochemistry and Biophysics 429 (2004) 237-243
11. Lide D.R. Handbook of Chemistry and Physics (2005), CRC Press
12. Lueking D.R., Fraley R.T., and Kaplan S. Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. Fate of "old" and "new" membrane. Journal of Biological Chemistry 253 (1978) 451-457
13. Polotskaya G.A., Andreeva D.V., and El'yashevich G.K. Investigation of gas diffusion through films of fullerene-containing poly(phenylene oxide). Technical Physics Letters 25 (1999) 555-557
14. Poole R.K. Nitric oxide and nitrosative stress tolerance in bacteria. Biochemical Society Transactions 33 (2005) 176-180
15. Rodionov D.A., Dubchak I.L., Arkin P.A., Alm E.A., and Gelfand M.S. Dissimilatory metabolosm of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. PLoS Computational Biology 1 (2005) 0415-0431
16. Spiro S. Regulators of bacterial responses to nitric oxide. Fems Microbiology Reviews 31 (2007) 193-211
17. Stumm W., and Morgan J.J. Aquatic Chemistry (1996), Wiley Interscience 1-1022 pp.
18. Van Dien S., and Schilling C.H. Bringing metabolomics data into the forefront of systems biology. Molecular Systems Biology 2 (2006) 1-2 10.1038/msb4100078 Art. No. 2006.0035
19. Wilhelm E., Battino R., and Wilcock R.J. Low-pressure solubility of gases in liquid water. Chemical Reviews 77 (1977) 219-262
20. Wilke C.R., and Chang P. Correlation of diffusion coefficients in dilute solutions. American Institute of Chemical Engeneers Journal 1 (1955) 264-270
21. Zacharia I.G., and Deen W.M. Diffusivity and solubility of nitric oxide in water and saline. Annals of Biomedical Engineering 33 (2005) 214-222
22. Zumft W.G. Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type. Journal of Inorganic Biochemistry 99 (2005) 194-215
23. 2O) to dinitrogen by Bacteria and Archaea. Advances in Microbial Physiology vol 52 (2007) 107-227