Chaperonin GroEL: Structure and reaction cycle

Current Protein and Peptide Science

Volumn 8, Issue 5, 2007, Pages 418-425

  Krishna, K Ananda ^a   Rao, G Venkateswara ^a   Rao, K R S Sambasiva ^a  

^a ACHARYA NAGARJUNA UNIVERSITY   (India)

Author keywords

Chaperonin; Escherichia coli; GroEL; GroES; Iterative annealing; Molecular chaperonins; Protein folding

Indexed keywords

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; CHAPERONIN; HEAT SHOCK PROTEIN 10; HEAT SHOCK PROTEIN 60; MEMBRANE PROTEIN;

ALLOSTERISM; BINDING SITE; CONFORMATIONAL TRANSITION; ENCAPSULATION; ESCHERICHIA COLI; NONHUMAN; PROTEIN AGGREGATION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN HYDROLYSIS; PROTEIN PROTEIN INTERACTION; PROTEIN SECRETION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; REVIEW;

ALLOSTERIC REGULATION; CHAPERONINS; ESCHERICHIA COLI PROTEINS; GROEL PROTEIN; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEIN FOLDING;

ESCHERICHIA COLI;

EID: 36248956187     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/138920307782411455     Document Type: Review

References (120)

1. Anfinsen, C. B. (1973) Science, 181, 223-230.
2. Levinthal, C. (1968) J. Chem. Phys., 65, 44-45.
3. Rooman, M., Dehouck, Y., Kwasigroch, J. M., Biot, C. and Gilis, D. ( 2002) J. Biomol. Struct. Dyn., 20, 327-329.
4. Dill, K. A. and Chan, H. S. (1997) Nat. Struct. Biol., 4, 10-19.
5. Gething, M. J. and Sambrook J. (1992) Nature, 355, 33-45.
6. Hartl, F. U. (1996) Nature, 381, 571-579.
7. Fink, A. L. (1999) Physiol. Rev., 79, 425-449.
8. Hartl, F. U. and Hayer-Hartl, M. (2002) Science, 295, 1852-1858.
9. Hendrix, R. W. (1979) J. Mol. Biol., 129, 375-392.
10. Hohn, T., Holm, B., Engel, A., Wurtz, M. and Smith, P. R. (1979) J. Mol. Biol., 129, 359-373.
11. Svensson, L. A., Surin, B. P., Dixon, N. E. and Spangfort, M. D. ( 1994) J. Mol. Biol., 235, 47-52.
12. Braig, K., Otwinowski, Z., Hegde, R., Boisvert, D. C., Joachimiak, A., Horwich, A. L. and Sigler, P. B. (1994)Nature, 371, 578-586.
13. Braig, K., Adams, P. D. and Brünger, A. T. (1995) Nat. Struct. Biol., 2, 1083-1094.
14. Xu, Z., Horwich, A. L. and Sigler, P. B. (1997) Nature, 388, 741-750.
15. Harris, R. J., Plückthun, A. and Zahn, R. (1994) J. Struct. Biol., 112, 216-230.
16. Igarashi, Y., Kimura, K., Ichimura, K., Matsuzaki, S., Ikura, T., Kuwajima, K. and Kihara, H. (1995) Biophys. Chem., 53, 259-266.
17. Chen, S., Roseman, A. M., Hunter, A. S., Wood, S. P., Burston, S. G., Ranson, N. A., Clarke, A. R. and Saibil, H. R. (1994) Nature, 371, 261-264.
18. Roseman, A. M., Chen, S., White, H., Braig, K. and Saibil, H. R. ( 1996) Cell, 87, 241-251.
19. De Carlo, S., El-Bez, C., Alvarez-Rúa, C., Borge, J. and Dubochet, J. (2002) J. Struct. Biol., 138, 216-226.
20. Ludtke, S. J., Jakana, J., Song, J.-L., Chuang, D. T. and Chiu, W. ( 2001) J. Mol. Biol., 314, 253-262.
21. Thiyagarajan, P., Henderson, S. J. and Joachimiak, A. (1996) Structure, 4, 79-88.
22. Stegmann, R., Manakova, E., Rossle, M., Heumann, H. Nieba-Axmann, S. E., Plückthun, A., Hermann, T., May, R. P. and Wiedenmann, A. (1998) J. Struct. Biol., 121, 30-40.
23. Mou, J., Sheng, S., Ho, R. and Shan, Z. (1996) Biophys. J., 71, 2213-2221.
24. Valle, F., De Rose, J. A., Dietler, G., Kawe, M., Plückthun, A. aud Semenza, G. (2001) J. Microsc., 203, 195-198.
25. Valle, F., De Rose, J. A., Dietler, G., Kawe, M., Plückthun, A. and Semenza, G. (2002) Ultramicroscopy, 93, 83-89.
26. Viani, M. B., Pietrasanta, L. I., Thompson, J. B., Chand, A., Gebeshuber, I. C., Kindt, J. H., Richter, M., Hansma, H. G. and Hansma, P. K. (2000) Nat. Struct. Biol., 7, 644-647.
27. Böhm, J., Frangakís A,. S., Hegerl, R., Nickell, S.; Typke; D. and Baumeister, W. (2000) Proc. Natl. Acad. Sci. USA, 97, 14245-14250.
28. Hunt, J. F., Weaver, A. J., Landry, S. J; Gierasch, L. and Deisenhofer, J. (1996) Nature, 379, 37-45.
29. Mou, J., Czajkowsky, D. M., Sheng, S. J., Ho, R. and Shao, Z. (1996) FEBS Lett., 381, 161-164.
30. Horwich, A. L., Low, K. B., Fenton, W. A., Hirshfield, I. N. and Furtak, K. (1993) Cell, 74, 909-917.
31. Houry, W. A., Frishman, D. Eckerskorn, C., Lottspeich, F. and Hartll, F. U. (1999) Nature, 402, 147-154.
32. Ying, B. W., Taguchi, H., Kondo, M. and Ueda, T. (2005) J Biol. Chem., 280, 12035-12040.
33. Ellis, R. J. (2005) Curr. Biol., 15, R661-R663.
34. Fenton, W. A. and Horwich, A. L. (1997) Protein Sci., 6, 743-760.
35. Horovitz, A. (1998) Curr. Opin. Struct. Biol., 8, 93-100.
36. Sigler, P. B., Xu, Z., Rye, H. S., Burston, S. G., Fenton, W. A. and Horwich, A. L. (1998) Annu. Rev. Biochem., 67, 581-608.
37. Grallert, H. and Buchner, J. (2001) J. Struct. Biol., 135, 95-103.
38. Thirumalai, D. and Lorimer, G. H. (2001) Annu. Rev. Biophys. Biomol. Struct., 30, 245-269.
39. Walter, S. (2002) Cell Mol. Life Sci., 59, 1589-1597.
40. Rye, H. S., Burston, S. G., Fenton, W. A., Beechem, J. M., Xu, Z., Sigler, P. B. and Horwich, A. L. (1997) Nature, 388, 792-798.
41. Rye, H. S., Roseman, A. M., Chen, S., Furtak, K., Fenton, W. A., Saibil, H. R. and Horwich, A. L. (1999) Cell, 97, 325-338.
42. Farr, G. W., Furtak, K., Rowland, M. B., Ranson, N. A., Saibil, H. R., Kirchhausen, T. and Horwich, A. L. (2000) Cell, 100, 561-573.
43. Xu, Z. and Sigler, P. B. (1998) J. Struct. Biol., 124, 129-141
44. Houry, W. A. (2001) Biochem. Cell Biol., 79, 569-577.
45. Chaudburi, T. K. and Gupta, P. (2005) Cell Stress Chaperones, 10, 24-36.
46. Fenton, W. A., Kashi, Y., Furtak, K. and Horwich, A. L. (1994). Nature, 317, 614-619.
47. Zahn, R., Axmann, S. E., Rücknagel K.-P. Jaeger, E., Laminet, A. A. and Plückthun, A. (1994) J. Mol. Biol., 242, 150-164.
48. Richarme, G. and Kohiyama, M. (1994) J. Biol. Chem. 269, 7095-7098.
49. Zahn, R. and Plückthun, A. (1994) J. Mol. Biol., 242, 165-174.
50. Itzhaki, L. S., Otzen, D. E. and Fersht, A. R. (1995) Biochemistry, 34, 14581-14587.
51. Lin, Z., Schwartz, F. P. and Eisenstein, E. (1995) J Biol. Chem., 270, 1011-1014.
52. Perrett, S., Zahn, R., Stenberg, G. and Fresht, A. R. (1997) J. Biol. Chem., 269, 892-901.
53. Aoki, K., Taguchi, H., Shindo, Y., Yoshida, M., Ogasahara, K. Yutani, K. and Tanaka, N. (1997) J. Biol. Chem., 272, 32158-32162.
54. Brazil, B. T., Ybarra, J. and Horowitz, P. M. (1998) J. Biol. Chem., 273, 3257-3263.
55. Vinckier, A., Gervasoni, P., Zaugg, F., Ziegler, U., Lindner, P., Groscurth, P., Plückthun, A. and Semenza, G. (1998) Biophys. J., 74, 3256-3263.
56. Katsumata, K., Okazaki, A., Tsurupa, G. P. and Kuwajima, K. (1996) J. Mol. Biol., 264, 643-649.
57. Pack, C. G., Aoki, K., Taguchi, H. Yoshida, M., Kinjo, M. and Tamura, M. (2000) Biochem. Biophys. Res. Commun., 267, 300-304.
58. Motojima, F., Makin, T., Aoki, K., Makino, Y., Kuwajimi, K, Yoshida, M. (2000) Biochem. Biophys. Res. Commun., 267, 842-849.
59. Ashcroft, A. E., Brinker, A., Coyle, J. E., Weber, F., Kaiser, M., Moroder, L., Parsons, M. R., Jager, J., Hartl, U. F., Hayer-Hartl, M. and Radford, S. E. (2002) J. Biol. Chem., 277, 33115-33126.
60. Stan, G., Thirumalai, D., Lorimer, G. H. and Brooks, R. R. (2003) Biophys. Chem., 100, 453-467.
61. Wang, J. and Chen, L. (2003) J. Mol. Biol. 334, 489-499.
62. Zahn, R., Spitzfaden, C., Ottiger, M., Wüthrich, K. and Plückthun, A. (1994) Nature, 368, 261-265.
63. Zahn, R., Perrett, S. and Fersht, A. R. (1996) J. Mol. Biol., 261, 43-61.
64. Zahn, R., Perrett, S., Stenberg, G. and Fersht, A. R. (1996) Science, 271, 642-645.
65. Persson, M., Hammarström, P., Lindgren, M., Jonsson, B.-H., Svensson, M. and Carlsson, U. (1999) Biochemistry, 38, 432-441.
66. Hammarström, P., Perssön, M., Owenius, R., Lindgren, M. and Carlsson, U. (2000) J. Biol, Chem., 275, 22832-22838.
67. van der Vaart, A., Ma, J. and Karplus, M. (2004) Biophys. J., 87, 562-573.
68. Saibil, H. (1996) Structure, 4, 1-4.
69. Kawe, M. and Plückthun, A. (2006) J. Mol. Biol., 357, 411-426.
70. Ewalt, K. L., Hendrick, J. P., Houry, W. A. and Hartl, F. U. (1997) Cell, 90, 491-500.
71. Sakikawa, C., Taguchi, H., Makino, Y. and Yoshida, M. (1999) J. Biol. Chem., 274, 21251-21256.
72. Gordon, C. L., Sather, S. K., Casjens, S. and King, J. (1994) J. Biol. Chem., 269, 27941-27951.
73. Huang, Y. S. and Chuang, D. T. (1999) J. Biol. Chem., 274, 10405-10412.
74. Chaudhuri, T. K., Farr, G. W., Fenton, W. A., Rospert, S and Horwich, A. L. (2001 Cell, 107, 235-246.
75. Song, J. L., Li, J., Huang, Y. S. and Chuang D. T. (2003) J. Biol. Chem., 278, 2515-2521.
76. Weissman, J. S., Hohl, C. M., Koyalenko, O., Kashi, Y., Chen, S., Braig, K., Saibil, H. R., Fenton, W. A. and Horwich, A. L. (1995) Cell, 83, 577-587.
77. Mayhew, M., de Silva, A. C., Martin, J., Erdjument-Bromage, H., Tempst, P. and Hartl, F..U. (1996) Nature, 379, 420-426.
78. Koike-Takeshita, A., Shimamura, T., Yokoyama, K., Yoshida, M. and Taguchi, H. (2006) J. Biol. Chem., 281, 962-967.
79. Coluzza, I., van der Vies, S. M. and Frenkel, D. (2006) Biophys. J., 90, 3375-3381.
80. Ma, J., Sigler, P. B., Xu, Z. and Karplus, M. (2000) J. Mol. Biol., 302, 303-313.
81. Taniguchi, M., Yoshimi, T., Hongo, K., Mizobata, T. and Kawata, Y. ( 2004) J. Biol. Chem., 279, 16368-16376.
82. Azem, A., Diamant, S., Kessel, M., Weiss, C. and Goloubinoff, P. ( 1995) Proc. Natl. Acad. Sci. USA, 92, 12021-12025.
83. Corrales, F. J. and Fersht, A. R. (1996) Fold. Des., 1, 265-273.
84. Melkani, G. C., Zardeneta, G. and Mendoza, J. A. (2003) Biometals, 16, 476-484.
85. Sot, B., von Germar, F., Mantele, W., Valpuesta, J. M., Taneva, S. G. and Muga, A. (2005) Protein Sci., 14, 2267-2274.
86. Ranson, N. A., Clare, D. K., Farr, G. W., Houldershaw, D., Horwich, A. L. and Saibil, H. R. Nat. Struct. Mol. Biotl., 2006, 13, 147-152.
87. Yifrach, O. and Horovitz, A. (1994) J. Mol. Biol., 243, 397-401.
88. Yifrach, O. and Horovitz, A. (1995) Biochemistry, 34, 5303-5308.
89. Gray, T. E. and Fersht, A. R. (1991) FEBS Lett., 292, 254-258.
90. Bochkareva, E. S., Lissin, N. M., Flynn, G. C., Rothman, J. E. and Girshovich, A. S. (1992) J. Biol. Chem., 267, 6796-6800.
91. Bochkareva, E. S. and Girshovich, A. S. (1994) J. Biol. Chem., 269, 23869-23871.
92. Monod, J., Wyman, J. and Changeux, J. P. (1995) J. Mol. Biol., 12, 88-118.
93. Koshland, D. E. Jr., Nemethy, G. and Filmer, D. (1996) Biochemistry, 5, 365-385.
94. Kawata, Y., Kawagoe, M., Hongo, K., Miyaziki, T., Higurashi, T., Mizobata, T. and Nagai, J. (1999) Biochemistry, 38, 15731-15740.
95. Fenton, W. A., Wessiman, J. S. and Horwich, A. L. (1996) Chem. Biol., 3, 157-161.
96. Agard, D. A. (1993) Science, 260, 1903-1904.
97. Hayer-Hartl, M. K., Weber, F. and Hard, F. U. (1996) EMBO J., 15, 6111-6121.
98. Weissman, J. S., Rye, H. S., Fenton, W. A., Beechem, J. M. and Horwich, A. L. (1996) Cell, 84, 481-490.
99. Ellis, R. J. (2003) Curr. Biol., 13, R881-R883.
100. Todd, M. J., Viitanen, P. V. and Lorimer, G. H. (1994) Science, 265, 659-666.
101. Weissman, J. S., Kashi, Y., Fenton, W. A. and Horwich, A. L. (1994) Cell, 78, 693-702.
102. Todd, M. J., Lorimer, G. H. and Thirumalai, D. (1996) Proc. Natl. Acad Sci. USA, 93, 4030-4035.
103. Sfatos, C. D., Gutin, A. M., Abkevich, V. I. and Shakhnovich, E. I. ( 1996) Biochemistry, 35, 334-339.
104. Betancourt, M. R. and Thirumalai, D. (1999) J. Mol. Biol., 287, 627-644.
105. Shtilerman, M., Lorimer, G. H. and Englander, S. W. (1999) Science, 284, 822-825.
106. Wynn, R. M., Song, J.L. and Chuang, D. T. (2000) J. Biol. Chem., 275, 2786-2794.
107. Ellis, R. J. (2001) Curr. Biol., 11, R1038-R1040.
108. Brinker, A., Pfeifer, G., Kerner, M. J., Naylor, D.J., Hartl, F. U. and Hayer-Hartl, M. (2001) Cell, 107, 223-233.
109. Jewett, A. I., Baumketner, A. and Shea, J.-E. (2004) Proc. Natl. Acad. Sci. USA, 101, 13192-13197.
110. Ramakrishnan, V. (2002) Cell, 108, 557-572.
111. Smith, D. F., Whitesell, L. and Katsanis, E. (1998) Pharmacol. Rev., 50, 493-514.
112. Stirling, P. C. Lundin, V. F. and Leroux, M. R. (2003) EMBO J., 4, 565-570.
113. Temussi, P. A., Masino, L. and Pastore, A. (2003) EMBO J., 22, 355-361.
114. Sun, J., Sawa, C. G., Deaton, J., Kaback, H. R., Svrakic, M., Young, R. and Holzenburg, A. (2005) Arch. Biochem. Biophys. 434, 352-257.
115. Mishra, R., Séckler, R. and Bhat, R. J. Biol. Chem. (2005) 280, 15553-15560.
116. Ishii D., Kinbira, K., Ishida, Y., Ishii, N., Okochi, M., Yohda, M. and Aida, T. (2003) Nature, 423, 628-632.
117. Bu, S., Tsang, P. W. and Fu, R. Z. (2005 J. Appl. Microbiol., 98, 210-215.
118. Czogalla, A., Kwolek, P., Hryniewicz-Jankowska, A., Nietubyc, M., Leluk, J. and Sikorski, A. F. (2003) Arch. Biochem. Biophys., 415, 94-100.
119. Krueger, S., Gregurick, S. K., Zondlo, J. and Eisenstein, E. (2003) J. Struct. Biol., 141, 240-258.
120. Sparrer, H. and Buchner, J. (2000) J. Biol. Chem., 272, 14080-14086.