Transcriptional profile induced by furazolidone treatment of Shigella flexneri

Applied Microbiology and Biotechnology

Volumn 77, Issue 3, 2007, Pages 657-667

  Fu, Hua ^a   Leng, Wenchuan ^a   Wang, Jing ^a   Zhang, Wenliang ^a   Peng, Junping ^a   Wang, Lingling ^a   Jin, Qi ^a,b  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b INSTITUTE OF PATHOGEN BIOLOGY   (China)

Author keywords

Furazolidone; Microarray; Shigella flexneri

Indexed keywords

AMINO ACIDS; DNA; FREE RADICALS; METABOLISM; MICROARRAYS; OXYGEN;

COFACTORS METABOLISM; DNA REPAIR SYSTEM; FURAZOLIDONE TREATMENT; NITROFURAN DERIVATIVE; SHIGELLA FLEXNERI;

PATHOGENS;

FURAZOLIDONE;

BACTERIAL DISEASE; BACTERIUM; DEVELOPING WORLD; DRUG; ENDEMIC SPECIES; ENZYME; INFECTIOUS DISEASE; KETONE; METABOLISM; OXIDATION;

AMINO ACID METABOLISM; ANTIMICROBIAL ACTIVITY; ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; DNA REPAIR; DRUG MECHANISM; ENERGY METABOLISM; GENETIC TRANSCRIPTION; IRON METABOLISM; IRON TRANSPORT; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; RADICAL REACTION; SHIGELLA FLEXNERI;

ANTI-INFECTIVE AGENTS, LOCAL; BACTERIAL PROTEINS; FURAZOLIDONE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SHIGELLA FLEXNERI; TRANSCRIPTION, GENETIC;

SHIGELLA FLEXNERI;

EID: 36248955027     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-1180-9     Document Type: Article

References (49)

1. Abdul-Tehrani H, Hudson AJ, Chang YS, Timms AR, Hawkins C, Williams JM, Harrison PM, Guest JR, Andrews SC (1999) Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient. J Bacteriol 181:1415-1428
2. Ali BH (1999) Pharmacological, therapeutic and toxicological properties of furazolidone: some recent research. Vet Res Commun 23:343-360
3. Beckers G, Nolden L, Burkovski A (2001) Glutamate synthase of Corynebacterium glutamicum is not essential for glutamate synthesis and is regulated by the nitrogen status. Microbiology 147:2961-2970
4. Brown OR, Smyk-Randall E, Draczynska-Lusiak B, Fee JA (1995) Dihydroxy-acid dehydratase, a [4Fe-4S] cluster-containing enzyme in Escherichia coli: effects of intracellular superoxide dismutase on its inactivation by oxidant stress. Arch Biochem Biophys 319:10-22
5. Calhoun DH, Wallen JW, Traub L, Gray JE, Kung HF (1985) Internal promoter in the ilvGEDA transcription unit of Escherichia coli K-12. J Bacteriol 161:128-132
6. Chang W, Small DA, Toghrol F, Bentley WE (2005) Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide. BMC Genomics 6:115
7. Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M, Linehan WM, Knezevic V, Emmert-Buck MR (2002) Post-analysis follow-up and validation of microarray experiments. Nat Genet 32:509-514 (Suppl)
8. Clinical and Laboratory Standards Institute (2006) Methods for dilution antimicrobial susceptibility test for bacteria that grow aerobically, approved standard M7-A7, 7th edn. Clinical and Laboratory Standards Institute, Wayne
9. Demple B (1999) Radical ideas: genetic responses to oxidative stress. Clin Exp Pharmacol Physiol 26:64-68
10. Dutta P, Sett A, Sarkar A, Mitra U, Saha D, Manna B, Kundu B, Gupta A (1995) Comparative efficacy of furazolidone and nalidixic acid in the empirical treatment of acute invasive diarrhea: randomized clinical trial. Indian Pediatr 32:13-19
11. Guedon E, Serror P, Ehrlich SD, Renault P, Delorme C (2001) Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis. Mol Microbiol 40:1227-1239
12. Higgins CF, Hardie MM, Jamieson D, Powell LM (1983) Genetic map of the opp (Oligopeptide permease) locus of Salmonella typhimurium. J Bacteriol 153:830-836
13. Hutter B, Schaab C, Albrecht S, Borgmann M, Brunner NA, Freiberg C, Ziegelbauer K, Rock CO, Ivanov I, Loferer H (2004) Prediction of mechanisms of action of antibacterial compounds by gene expression profiling. Antimicrob Agents Chemother 48:2838-2844
14. Imlay JA, Linn S (1988) DNA damage and oxygen radical toxicity. Science 240:1302-1309
15. Jin Q, Yuan Z, Xu J, Wang Y, Shen Y, Lu W, Wang J, Liu H, Yang J, Yang F, Zhang X, Zhang J, Yang G, Wu H, Qu D, Dong J, Sun L, Xue Y, Zhao A, Gao Y, Zhu J, Kan B, Ding K, Chen S, Cheng H, Yao Z, He B, Chen R, Ma D, Qiang B, Wen Y, Hou Y, Yu J (2002) Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res 30:4432-4441
16. Keyer K, Imlay JA (1996) Superoxide accelerates DNA damage by elevating free-iron levels. Proc Natl Acad Sci USA 93:13635-13640
17. Kotloff KL, Winickoff JP, Ivanoff B, Clemens JD, Swerdlow DL, Sansonetti PJ, Adak GK, Levine MM (1999) Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ 77:651-666
18. Lee JH, Yeo WS, Roe JH (2004) Induction of the sufA operon encoding Fe-S assembly proteins by superoxide generators and hydrogen peroxide: involvement of OxyR, IHF and an unidentified oxidant-responsive factor. Mol Microbiol 51:1745-1755
19. Lu C, McCalla DR (1978) Action of some nitrofuran derivatives on glucose metabolism, ATP levels, and macromolecule synthesis in Escherichia coli. Can J Microbiol 24:650-657
20. Marvin-Sikkema FD, de Bont JA (1994) Degradation of nitroaromatic compounds by microorganisms. Appl Microbiol Biotechnol 42:499-507
21. Masse E, Gottesman S (2002) A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci USA 99:4620-4625
22. Materu SF, Lema OE, Mukunza HM, Adhiambo CG, Carter JY (1997) Antibiotic resistance pattern of Vibrio cholerae and Shigella causing diarrhoea outbreaks in the eastern Africa region: 1994-1996. East Afr Med J 74:193-197
23. Maya JD, Bollo S, Nunez-Vergara LJ, Squella JA, Repetto Y, Morello A, Perie J, Chauviere G (2003) Trypanosoma cruzi: effect and mode of action of nitroimidazole and nitrofuran derivatives. Biochem Pharmacol 65:999-1006
24. McCord JM, Day ED Jr (1978) Superoxide-dependent production of hydroxyl radical catalyzed by iron-EDTA complex. FEBS Lett 86:139-142
25. McHugh JP, Rodriguez-Quinones F, Abdul-Tehrani H, Svistunenko DA, Poole RK, Cooper CE, Andrews SC (2003) Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. J Biol Chem 278:29478-29486
26. Membrillo-Hernandez J, Kim SO, Cook GM, Poole RK (1997) Paraquat regulation of hmp (flavohemoglobin) gene expression in Escherichia coli K-12 is SoxRS independent but modulated by sigma S. J Bacteriol 179:3164-3170
27. Morey JS, Ryan JC, Van Dolah FM (2006) Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol Proced Online 8:175-193
28. Mostertz J, Scharf C, Hecker M, Homuth G (2004) Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150:497-512
29. Ng WL, Kazmierczak KM, Robertson GT, Gilmour R, Winkler ME (2003) Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors. J Bacteriol 185:359-370
30. Pal AK, Chatterjee SN (1985) Induction of lambda prophage by furazolidone. Mutat Res 156:69-75
31. Payne SM, Wyckoff EE, Murphy ER, Oglesby AG, Boulette ML, Davies NM (2006) Iron and pathogenesis of Shigella: iron acquisition in the intracellular environment. Biometals 19:173-180
32. Peng J, Zhang X, Yang J, Wang J, Yang E, Bin W, Wei C, Sun M, Jin Q (2006) The use of comparative genomic hybridization to characterize genome dynamics and diversity among the serotypes of Shigella. BMC Genomics 7:218
33. Peterson FJ, Mason RP, Hovsepian J, Holtzman JL (1979) Oxygen-sensitive and -insensitive nitroreduction by Escherichia coli and rat hepatic microsomes. J Biol Chem 254:4009-4014
34. Phadtare S, Kato I, Inouye M (2002) DNA microarray analysis of the expression profile of Escherichia coli in response to treatment with 4,5-dihydroxy-2-cyclopenten-1-one. J Bacteriol 184:6725-6729
35. Quail MA, Haydon DJ, Guest JR (1994) The pdhR-aceEF-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex. Mol Microbiol 12:95-104
36. Skovran E, Lauhon CT, Downs DM (2004) Lack of YggX results in chronic oxidative stress and uncovers subtle defects in Fe-S cluster metabolism in Salmonella enterica. J Bacteriol 186:7626-7634
37. Sreider CM, Grinblat L, Stoppani AO (1990) Catalysis of nitrofuran redox-cycling and superoxide anion production by heart lipoamide dehydrogenase. Biochem Pharmacol 40:1849-1857
38. Srinivasan C, Liba A, Imlay JA, Valentine JS, Gralla EB (2000) Yeast lacking superoxide dismutase(s) show elevated levels of "free iron" as measured by whole cell electron paramagnetic resonance. J Biol Chem 275:29187-29192
39. Stohl EA, Seifert HS (2006) Neisseria gonorrhoeae DNA recombination and repair enzymes protect against oxidative damage caused by hydrogen peroxide. J Bacteriol 188:7645-7651
40. Stohl EA, Criss AK, Seifert HS (2005) The transcriptome response of Neisseria gonorrhoeae to hydrogen peroxide reveals genes with previously uncharacterized roles in oxidative damage protection. Mol Microbiol 58:520-532
41. Sur D, Ramamurthy T, Deen J, Bhattacharya SK (2004) Shigellosis: challenges & management issues. Indian J Med Res 120:454-462
42. Taneja N, Mohan B, Khurana S, Sharma M (2004) Antimicrobial resistance in selected bacterial enteropathogens in north India. Indian J Med Res 120:39-43
43. Tojo S, Satomura T, Morisaki K, Deutscher J, Hirooka K, Fujita Y (2005) Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA. Mol Microbiol 56:1560-1573
44. Tomar A, Eiteman MA, Altman E (2003) The effect of acetate pathway mutations on the production of pyruvate in Escherichia coli. Appl Microbiol Biotechnol 62:76-82
45. Vroomen LH, Berghmans MC, Groten JP, Koeman JH, van Bladeren PJ (1988) Reversible interaction of a reactive intermediate derived from furazolidone with glutathione and protein. Toxicol Appl Pharm 95:53-60
46. Waters ME, Handy MK (1969) Effect of nitrofurans and chlortetracycline on microorganisms associated with shrimp. Appl Microbiol 17:21-25
47. Yang YT, Bennett GN, San KY (2001) The effects of feed and intracellular pyruvate levels on the redistribution of metabolic fluxes in Escherichia coli. Metab Eng 3:115-123
48. Zheng L, White RH, Cash VL, Jack RF, Dean DR (1993) Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis. Proc Natl Acad Sci USA 90:2754-2758
49. Zheng M, Wang X, Templeton LJ, Smulski DR, LaRossa RA, Storz G (2001) DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol 183:4562-4570