메뉴 건너뛰기




Volumn 1115, Issue , 2007, Pages 132-141

Algorithmic issues in reverse engineering of protein and gene networks via the modular response analysis method

Author keywords

Biological networks; Randomized approximation algorithms; Reverse engineering; Set multicover

Indexed keywords

ALGORITHM; ANALYSIS; CONFERENCE PAPER; EXPERIMENTAL DESIGN; GENETICS; MODULAR RESPONSE ANALYSIS; MODULATION; PROTEIN ENGINEERING; THEORETICAL STUDY;

EID: 36248938269     PISSN: 00778923     EISSN: 17496632     Source Type: Book Series    
DOI: 10.1196/annals.1407.001     Document Type: Conference Paper
Times cited : (5)

References (18)
  • 1
    • 0036789922 scopus 로고    scopus 로고
    • Untangling the wires: A novel strategy to trace functional interactions in signaling and gene networks
    • KHOLODENKO, B.N., A. KIYATKIN, F. BRUGGEMAN, et al. 2002. Untangling the wires: a novel strategy to trace functional interactions in signaling and gene networks. Proc. Natl. Acad. Sci. USA 99: 12841-12846.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12841-12846
    • KHOLODENKO, B.N.1    KIYATKIN, A.2    BRUGGEMAN, F.3
  • 2
    • 36248950115 scopus 로고    scopus 로고
    • KHOLODENKO, B.N. & E.D. SONTAG. 2002. Determination of functional network structure from local parameter dependence data. arXiv physics/0205003, May 2002.
    • KHOLODENKO, B.N. & E.D. SONTAG. 2002. Determination of functional network structure from local parameter dependence data. arXiv physics/0205003, May 2002.
  • 3
    • 9644284380 scopus 로고    scopus 로고
    • Inference of signaling and gene regulatory networks by steady-state perturbation experiments: Structure and accuracy
    • ANDREC, M., B.N. KHOLODENKO, R.M. LEVY & E.D. SONTAG. 2005. Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy. J. Theoret. Biol. 232: 427-441.
    • (2005) J. Theoret. Biol , vol.232 , pp. 427-441
    • ANDREC, M.1    KHOLODENKO, B.N.2    LEVY, R.M.3    SONTAG, E.D.4
  • 4
    • 4444226267 scopus 로고    scopus 로고
    • Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data
    • SONTAG, E.D., A. KIYATKIN & B.N. KHOLODENKO. 2004. Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data. Bioinformatics 20: 1877-1886.
    • (2004) Bioinformatics , vol.20 , pp. 1877-1886
    • SONTAG, E.D.1    KIYATKIN, A.2    KHOLODENKO, B.N.3
  • 5
    • 3142617691 scopus 로고    scopus 로고
    • Mathematical and computational techniques to deduce complex biochemical reaction mechanisms
    • CRAMPIN, E.J., S. SCHNELL & P.E. MCSHARRY. 2004. Mathematical and computational techniques to deduce complex biochemical reaction mechanisms. Prog.Biophys. Mol. Biol. 86: 77-112.
    • (2004) Prog.Biophys. Mol. Biol , vol.86 , pp. 77-112
    • CRAMPIN, E.J.1    SCHNELL, S.2    MCSHARRY, P.E.3
  • 6
    • 0038094430 scopus 로고    scopus 로고
    • From the top down: Towards a predictive biology of signaling networks
    • STARK, J., R. CALLARD & M. HUBANK. 2003. From the top down: towards a predictive biology of signaling networks. Trends Biotechnol. 21: 290-293.
    • (2003) Trends Biotechnol , vol.21 , pp. 290-293
    • STARK, J.1    CALLARD, R.2    HUBANK, M.3
  • 7
    • 33847355217 scopus 로고    scopus 로고
    • Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate
    • SANTOS, S.D.M., P.J. VERVEER & P.I.H. BASTIAENS. 2007. Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nat. Cell Biol. 9: 324-330.
    • (2007) Nat. Cell Biol , vol.9 , pp. 324-330
    • SANTOS, S.D.M.1    VERVEER, P.J.2    BASTIAENS, P.I.H.3
  • 8
    • 33846826914 scopus 로고    scopus 로고
    • Randomized approximation algorithms for set multicover problems with applications to reverse engineering of protein and gene networks
    • Math
    • BERMAN, P., B. DASGUPTA & E.D. SONTAG. 2007. Randomized approximation algorithms for set multicover problems with applications to reverse engineering of protein and gene networks. Discrete Appl. Math [special series on computational molecular biology] 155: 733-749.
    • (2007) special series on computational molecular biology. Discrete Appl , vol.155 , pp. 733-749
    • BERMAN, P.1    DASGUPTA, B.2    SONTAG, E.D.3
  • 9
    • 84918441630 scopus 로고
    • Geometrical and statistical properties of systems of linear inequalities with applications in pattern recognition
    • COVER, T. 1965. Geometrical and statistical properties of systems of linear inequalities with applications in pattern recognition. IEEE Trans. Electron. Comput. EC-14: 326-334.
    • (1965) IEEE Trans. Electron. Comput , vol.EC-14 , pp. 326-334
    • COVER, T.1
  • 10
    • 36248976021 scopus 로고    scopus 로고
    • (Reprinted [1992] in Artificial Neural Networks: Concepts and Theory. P. Mehra and B. Wah, Eds. IEEE Computer Society Press. Los Alamitos, CA.)
    • (Reprinted [1992] in Artificial Neural Networks: Concepts and Theory. P. Mehra and B. Wah, Eds. IEEE Computer Society Press. Los Alamitos, CA.)
  • 11
    • 4244118371 scopus 로고
    • Theorie der vielfachen Kontinuitat
    • Birkhäuser. Basel
    • SCHLÄFLI, L. 1950. Theorie der vielfachen Kontinuitat (1852). In Gesammelte Mathematische Abhandlungen, Vol. 1: 177-392. Birkhäuser. Basel.
    • (1950) Gesammelte Mathematische Abhandlungen , vol.1 , pp. 177-392
    • SCHLÄFLI, L.1
  • 12
    • 0009846660 scopus 로고    scopus 로고
    • VC dimension of neural networks
    • C.M. Bishop, Ed, Springer-Verlag. Berlin
    • SONTAG, E.D. 1998. VC dimension of neural networks. In Neural Networks and Machine Learning. C.M. Bishop, Ed.: 69-95. Springer-Verlag. Berlin.
    • (1998) Neural Networks and Machine Learning , pp. 69-95
    • SONTAG, E.D.1
  • 14
    • 0032108328 scopus 로고    scopus 로고
    • A threshold for approximating set cover
    • FEIGE, U. 1998. A threshold for approximating set cover. JACM 45: 634-652.
    • (1998) JACM , vol.45 , pp. 634-652
    • FEIGE, U.1
  • 15
    • 0030714232 scopus 로고    scopus 로고
    • A sub-constant error-probability low-degree test and sub-constant error-probability PCP characterization of NP
    • El Paso, Texas, ACM Press, NY, pp
    • RAZ, R. & S. SAFRA.1997. A sub-constant error-probability low-degree test and sub-constant error-probability PCP characterization of NP. Proceedings of the 29th Annual ACM Symposium on Theory of Computing, El Paso, Texas, ACM Press, NY, pp. 475-484.
    • (1997) Proceedings of the 29th Annual ACM Symposium on Theory of Computing , pp. 475-484
    • RAZ, R.1    SAFRA, S.2
  • 16
    • 0034826228 scopus 로고    scopus 로고
    • Non-approximability results for optimization problems on bounded degree instances
    • Hersonissos, Greece, ACM Press, NY, pp
    • TREVISAN, L. 2001. Non-approximability results for optimization problems on bounded degree instances. Proceedings of of the 33rd ACM Symposium on Theory of Computing, Hersonissos, Greece, ACM Press, NY, pp. 453-461.
    • (2001) Proceedings of of the 33rd ACM Symposium on Theory of Computing , pp. 453-461
    • TREVISAN, L.1
  • 18
    • 0016349356 scopus 로고
    • Approximation algorithms for combinatorial problems
    • JOHNSON, D.S. 1974. Approximation algorithms for combinatorial problems. J. Comput. Systems Sci. 9: 256-278.
    • (1974) J. Comput. Systems Sci , vol.9 , pp. 256-278
    • JOHNSON, D.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.