메뉴 건너뛰기




Volumn 71, Issue 8, 2007, Pages 1927-1939

megB1, a novel macroevolutionary genomic marker of the fungal phylum basidiomycota

Author keywords

Basidiomycota; Fungal systematics; Molecular evolution; Ribosomal DNA; Transposon

Indexed keywords

BIOMARKERS; DNA SEQUENCES; GENES; GENETIC ENGINEERING; MOLECULAR STRUCTURE; RADIATION EFFECTS;

EID: 36148991047     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.70144     Document Type: Article
Times cited : (18)

References (47)
  • 1
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences
    • Kimura, M., A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120 (1980).
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 2
    • 0031786325 scopus 로고    scopus 로고
    • Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission
    • Peek, A. S., Vrijenhoek, R. C., and Gaut, B. S., Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission. Mol. Biol. Evol., 15, 1514-1523 (1998).
    • (1998) Mol. Biol. Evol , vol.15 , pp. 1514-1523
    • Peek, A.S.1    Vrijenhoek, R.C.2    Gaut, B.S.3
  • 5
    • 36148975439 scopus 로고    scopus 로고
    • Hibbett, D. S., Ribosomal RNA and fungal systematics. Trans. Mycol. Soc. Japan, 33, 533-556 (1992).
    • Hibbett, D. S., Ribosomal RNA and fungal systematics. Trans. Mycol. Soc. Japan, 33, 533-556 (1992).
  • 6
    • 0034350421 scopus 로고    scopus 로고
    • Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences
    • Moncalvo, J.-M., Lutzoni, F. M., Rehner, S. A., Johnson, J., and Vilgalys, R., Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst. Biol., 49, 278-305 (2000).
    • (2000) Syst. Biol , vol.49 , pp. 278-305
    • Moncalvo, J.-M.1    Lutzoni, F.M.2    Rehner, S.A.3    Johnson, J.4    Vilgalys, R.5
  • 8
    • 36148977679 scopus 로고    scopus 로고
    • Blackwell, M., Vilgalys, R., and Taylor, J. W., Fungi. Tree of Life. http://phylogeny.arizona.edu/tree/eukaryotes/fungi/fungi.html (1996).
    • Blackwell, M., Vilgalys, R., and Taylor, J. W., Fungi. Tree of Life. http://phylogeny.arizona.edu/tree/eukaryotes/fungi/fungi.html (1996).
  • 10
    • 0019944851 scopus 로고
    • Redividing the basidiomycetes on the basis of 5S rRNA sequences
    • Walker, W. F., and Doolittle, W. F., Redividing the basidiomycetes on the basis of 5S rRNA sequences. Nature, 299, 723-724 (1982).
    • (1982) Nature , vol.299 , pp. 723-724
    • Walker, W.F.1    Doolittle, W.F.2
  • 11
    • 33750305208 scopus 로고    scopus 로고
    • A kingdom revised
    • Bruns, T., A kingdom revised. Nature, 443, 758-761 (2006).
    • (2006) Nature , vol.443 , pp. 758-761
    • Bruns, T.1
  • 12
    • 33750329972 scopus 로고    scopus 로고
    • James, T. Y, Kauf, F, Schoch, C. L, Matheny, P. B, Hofstetter, V, Cox, C. J, Celio, G, Gueidan, C, Franker, E, Miadlikowska, J, Lumbsch, H. T, Rauhut, A, Reeb, V, Arnold, A. E, Amtoft, A, Stajich, J. E, Hosokawa, K, Sung, G.-H, Johnson, D, O'Rourke, B, Crockett, M, Binder, M, Curtis, J. M, Slot, J, Wang, Z, Wilson, A. W, Schüßler, A, Longcore, J. E, O'Donnell, K, Mozley-Standridge, S, Porter, D, Letcher, P, Powell, M. J, Taylor, J. W, White, M. M, Griffith, G. W, Davies, D. R, Humber, R. A, Morton, J. B, Sugiyama, J, Rossman, A. Y, Rogers, J. D, Pfister, D. H, Hewitt, D, Hansen, K, Hambleton, S, Shoemaker, R. A, Kohlmeyer, J, Volkmann-Kohlmeyer, B, Spotts, R, Serdani, M, Crous, P. W, Hughes, K. W, Matsuura, K, Langer, E, Langer, G, Untereiner, W. A, Lücking, R, Büdel, B, Geiser, D. M, Aptroot, A, Diederich, P, Schmitt, I, Schultz, M, Yahr, R, Hibbett, D. S, Lutzoni, F, MacLaughlin, D. J, Spatafora
    • James, T. Y., Kauf, F., Schoch, C. L., Matheny, P. B., Hofstetter, V., Cox, C. J., Celio, G., Gueidan, C., Franker, E., Miadlikowska, J., Lumbsch, H. T., Rauhut, A., Reeb, V., Arnold, A. E., Amtoft, A., Stajich, J. E., Hosokawa, K., Sung, G.-H., Johnson, D., O'Rourke, B., Crockett, M., Binder, M., Curtis, J. M., Slot, J., Wang, Z., Wilson, A. W., Schüßler, A., Longcore, J. E., O'Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P., Powell, M. J., Taylor, J. W., White, M. M., Griffith, G. W., Davies, D. R., Humber, R. A., Morton, J. B., Sugiyama, J., Rossman, A. Y., Rogers, J. D., Pfister, D. H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R. A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R., Serdani, M., Crous, P. W., Hughes, K. W., Matsuura, K., Langer, E., Langer, G., Untereiner, W. A., Lücking, R., Büdel, B., Geiser, D. M., Aptroot, A., Diederich, P., Schmitt, I., Schultz, M., Yahr, R., Hibbett, D. S., Lutzoni, F., MacLaughlin, D. J., Spatafora, J. W., and Vilgalys, R., Reconstructing the early evolution of fungi using a six-gene phylogeny. Nature, 443, 818-822 (2006).
  • 14
    • 0025170053 scopus 로고
    • Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola
    • Vilgalys, R., and Gonzalez, D., Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola. Curr. Genet., 18, 277-280 (1990).
    • (1990) Curr. Genet , vol.18 , pp. 277-280
    • Vilgalys, R.1    Gonzalez, D.2
  • 15
    • 0029861293 scopus 로고    scopus 로고
    • Virtually the entire Xenopus laevis rDNA multikilobase intergenic spacer serves to stimulate polymerase I transcription
    • Mougey, E. B., Pape, L. K., and Sollner-Webb, B., Virtually the entire Xenopus laevis rDNA multikilobase intergenic spacer serves to stimulate polymerase I transcription. J. Biol. Chem., 271, 27138-27145 (1996).
    • (1996) J. Biol. Chem , vol.271 , pp. 27138-27145
    • Mougey, E.B.1    Pape, L.K.2    Sollner-Webb, B.3
  • 16
    • 0036069999 scopus 로고    scopus 로고
    • Identification of a prevalent Tricholoma matsutake ribotype in Japan by rDNA IGS1 spacer characterization
    • Guerin-Laguett, A., Matsushita, N., Kikuchi, K., Iwase, K., Lapeyrie, F., and Suzuki, K., Identification of a prevalent Tricholoma matsutake ribotype in Japan by rDNA IGS1 spacer characterization. Mycol. Res., 106, 435-443 (2002).
    • (2002) Mycol. Res , vol.106 , pp. 435-443
    • Guerin-Laguett, A.1    Matsushita, N.2    Kikuchi, K.3    Iwase, K.4    Lapeyrie, F.5    Suzuki, K.6
  • 17
    • 1842848046 scopus 로고    scopus 로고
    • Characterization of subrepeat regions within rDNA intergenic spacers of the edible basidiomycete Lentinula edodes
    • Saito, T., Tanaka, N., and Shinozawa, T., Characterization of subrepeat regions within rDNA intergenic spacers of the edible basidiomycete Lentinula edodes. Biosci. Biotechnol. Biochem., 66, 2125-2133 (2002).
    • (2002) Biosci. Biotechnol. Biochem , vol.66 , pp. 2125-2133
    • Saito, T.1    Tanaka, N.2    Shinozawa, T.3
  • 18
    • 26244455009 scopus 로고    scopus 로고
    • Phylogenetic analyses of DNA sequence reveal species partitions amongst isolates of Armillaria from Africa
    • Coetzee, M. P. A., Wingfield, B. D., Bloomer, P., and Wingfield, M. J., Phylogenetic analyses of DNA sequence reveal species partitions amongst isolates of Armillaria from Africa. Mycol. Res., 109, 1223-1234 (2005).
    • (2005) Mycol. Res , vol.109 , pp. 1223-1234
    • Coetzee, M.P.A.1    Wingfield, B.D.2    Bloomer, P.3    Wingfield, M.J.4
  • 19
    • 0029108257 scopus 로고
    • A PCR based identification method for species of Armillaria
    • Harrington, T. C., and Wingfield, B. D., A PCR based identification method for species of Armillaria. Mycologia, 87, 280-288 (1995).
    • (1995) Mycologia , vol.87 , pp. 280-288
    • Harrington, T.C.1    Wingfield, B.D.2
  • 20
    • 26244445440 scopus 로고    scopus 로고
    • Identification and characterization of Armillaria tabescens from the southern United States
    • Schnabel, G., Ash, J. S., and Bryson, P. K., Identification and characterization of Armillaria tabescens from the southern United States. Mycol. Res., 109, 1208-1222 (2005).
    • (2005) Mycol. Res , vol.109 , pp. 1208-1222
    • Schnabel, G.1    Ash, J.S.2    Bryson, P.K.3
  • 21
    • 33745507141 scopus 로고    scopus 로고
    • Genetic polymorphism of ferula mushroom growing on Ferula sinkiangensis
    • Zhang, J. X., Huang, C. Y., Ng, T. B., and Wang, H. X., Genetic polymorphism of ferula mushroom growing on Ferula sinkiangensis. Appl. Microbiol. Biotechnol., 71, 304-309 (2005).
    • (2005) Appl. Microbiol. Biotechnol , vol.71 , pp. 304-309
    • Zhang, J.X.1    Huang, C.Y.2    Ng, T.B.3    Wang, H.X.4
  • 22
    • 4544222472 scopus 로고    scopus 로고
    • SINEs of speciation: Tracking lineages with retroposons
    • Shedlock, A. M., Takahashi, K., and Okada, N., SINEs of speciation: tracking lineages with retroposons. Trends Ecol. Evol., 19, 545-553 (2004).
    • (2004) Trends Ecol. Evol , vol.19 , pp. 545-553
    • Shedlock, A.M.1    Takahashi, K.2    Okada, N.3
  • 23
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen, J. L., Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol., 42, 251-269 (2000).
    • (2000) Plant Mol. Biol , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 25
    • 0025864962 scopus 로고
    • Retroposons-seeds of evolution
    • Brosius, J., Retroposons-seeds of evolution. Science, 251, 753 (1991).
    • (1991) Science , vol.251 , pp. 753
    • Brosius, J.1
  • 26
    • 0000856986 scopus 로고
    • Isolation of DNA from fungal mycelia and single spores
    • eds. Innis, M. A, Gelfand, D. H, Sninsky, J. J, and White, T. J, Acadmic Press, San Diego, pp
    • Lee, S. B., and Taylor, J. W., Isolation of DNA from fungal mycelia and single spores. In "PCR Protocoles: A Guide to Methods and Applications," eds. Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., Acadmic Press, San Diego, pp. 282-299 (1990).
    • (1990) PCR Protocoles: A Guide to Methods and Applications , pp. 282-299
    • Lee, S.B.1    Taylor, J.W.2
  • 28
    • 0032826631 scopus 로고    scopus 로고
    • Identification of repetitive sequences containing motifs of retrotransposons in the ectomycorrhizal basidiomycete Tricholoma matsutake
    • Murata, H., Yamada, A., and Babasaki, K., Identification of repetitive sequences containing motifs of retrotransposons in the ectomycorrhizal basidiomycete Tricholoma matsutake. Mycologia, 91, 766-775 (1999).
    • (1999) Mycologia , vol.91 , pp. 766-775
    • Murata, H.1    Yamada, A.2    Babasaki, K.3
  • 30
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F., Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890 (1988).
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680 (1994).
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
  • 34
    • 0035488587 scopus 로고    scopus 로고
    • marY2N, a LINE-like non-long terminal repeat (non-LTR) retroelement from the ectomycorrhizal homobasidiomycete Tricholoma matsutake
    • Murata, H., Miyazaki, Y., and Yamada, A., marY2N, a LINE-like non-long terminal repeat (non-LTR) retroelement from the ectomycorrhizal homobasidiomycete Tricholoma matsutake. Biosci. Biotechnol. Biochem., 65, 2301-2305 (2001).
    • (2001) Biosci. Biotechnol. Biochem , vol.65 , pp. 2301-2305
    • Murata, H.1    Miyazaki, Y.2    Yamada, A.3
  • 35
    • 0033867739 scopus 로고    scopus 로고
    • marY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake
    • Murata, H., and Yamada, A., marY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake. Appl. Environ. Microbiol., 66, 3642-3645 (2000).
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3642-3645
    • Murata, H.1    Yamada, A.2
  • 36
    • 22144446446 scopus 로고    scopus 로고
    • Intra- and Inter-specific variations in the copy number of two types of retrotransposons from the ectomycorrhizal basidiomycete Tricholoma matsutake
    • Murata, H., and Babasaki, K., Intra- and Inter-specific variations in the copy number of two types of retrotransposons from the ectomycorrhizal basidiomycete Tricholoma matsutake. Mycorrhiza, 15, 381-386 (2005).
    • (2005) Mycorrhiza , vol.15 , pp. 381-386
    • Murata, H.1    Babasaki, K.2
  • 37
    • 20444410449 scopus 로고    scopus 로고
    • Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on δmarY1, the long terminal repeat of gypsy-type retroelement marY1
    • Murata, H., Babasaki, K., and Yamada, A., Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on δmarY1, the long terminal repeat of gypsy-type retroelement marY1. Mycorrhiza, 15, 179-186 (2004).
    • (2004) Mycorrhiza , vol.15 , pp. 179-186
    • Murata, H.1    Babasaki, K.2    Yamada, A.3
  • 38
    • 1842834205 scopus 로고    scopus 로고
    • Genetic evidence that two types of retroelements evolved through different pathways in ectomycorrhizal homobasidiomycetes Tricholoma spp
    • Murata, H., Babasaki, K., Miyazaki, Y., and Yamada, A., Genetic evidence that two types of retroelements evolved through different pathways in ectomycorrhizal homobasidiomycetes Tricholoma spp. Biosci. Biotechnol. Biochem., 66, 1880-1886 (2002).
    • (2002) Biosci. Biotechnol. Biochem , vol.66 , pp. 1880-1886
    • Murata, H.1    Babasaki, K.2    Miyazaki, Y.3    Yamada, A.4
  • 39
    • 27144491010 scopus 로고    scopus 로고
    • Genetic mosaics in the massive persistent rhizosphere colony "shiro" of the ectomycorrhizal basidiomycete Tricholoma matsutake
    • Murata, H., Ohta, A., Yamada, A., Narimatsu, M., and Futamura, N., Genetic mosaics in the massive persistent rhizosphere colony "shiro" of the ectomycorrhizal basidiomycete Tricholoma matsutake. Mycorrhiza, 15, 505-512 (2005).
    • (2005) Mycorrhiza , vol.15 , pp. 505-512
    • Murata, H.1    Ohta, A.2    Yamada, A.3    Narimatsu, M.4    Futamura, N.5
  • 40
    • 0029186929 scopus 로고
    • Skippy, a retrotransposon from the fungal plant pathogen Fusarium oxysporum
    • Anaya, N., and Roncero, M. I. G., Skippy, a retrotransposon from the fungal plant pathogen Fusarium oxysporum. Mol. Gen. Genet., 249, 637-647 (1995).
    • (1995) Mol. Gen. Genet , vol.249 , pp. 637-647
    • Anaya, N.1    Roncero, M.I.G.2
  • 42
    • 0029808061 scopus 로고    scopus 로고
    • MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea
    • Farman, M. L., Tosa, Y., Nitta, N., and Leong, S. A., MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea. Mol. Gen. Genet., 251, 665-674 (1996).
    • (1996) Mol. Gen. Genet , vol.251 , pp. 665-674
    • Farman, M.L.1    Tosa, Y.2    Nitta, N.3    Leong, S.A.4
  • 43
    • 0024828129 scopus 로고
    • Host species-specific conservation of a family of repeated DNA sequences in the genome of a fungal pathogen
    • Hamer, J. E., Farrall, L., Orbach, M. J., Valent, B., and Chumley, F. G., Host species-specific conservation of a family of repeated DNA sequences in the genome of a fungal pathogen. Proc. Natl. Acad. Sci. USA, 86, 9981-9985 (1989).
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9981-9985
    • Hamer, J.E.1    Farrall, L.2    Orbach, M.J.3    Valent, B.4    Chumley, F.G.5
  • 45
    • 0027638003 scopus 로고
    • Host species-specific repetitive DNA sequence in the genome of Magnaporthe grisea, the rice blast fungus
    • Sone, T., Suto, M., and Tomita, F., Host species-specific repetitive DNA sequence in the genome of Magnaporthe grisea, the rice blast fungus. Biosci. Biotechnol. Biochem., 57, 1228-1230 (1993).
    • (1993) Biosci. Biotechnol. Biochem , vol.57 , pp. 1228-1230
    • Sone, T.1    Suto, M.2    Tomita, F.3
  • 47
    • 0041350556 scopus 로고    scopus 로고
    • Babasaki, K., Masuno, K., and Murata, H., Interactions of heterologous mycelia colonized in the substrate govern fruit body production in the cultivated homobasidiomycete Pholiota nameko. Biosci. Biotechnol. Biochem., 67, 100-106 (2003).
    • Babasaki, K., Masuno, K., and Murata, H., Interactions of heterologous mycelia colonized in the substrate govern fruit body production in the cultivated homobasidiomycete Pholiota nameko. Biosci. Biotechnol. Biochem., 67, 100-106 (2003).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.