Identification of additional quantitative trait loci (QTL) responsible for susceptibility to infectious pancreatic necrosis virus in rainbow trout

Fish Pathology

Volumn 42, Issue 3, 2007, Pages 131-140

  Ozaki, Akiyuki ^a,b   Khoo, Sok Kean ^b,c   Yoshiura, Yasutoshi ^a   Ototake, Mitsuru ^a   Sakamoto, Takashi ^b   Dijkstra, Johannes Martinus ^a,d   Okamoto, Nobuaki ^b  

^a FISHERIES RESEARCH AGENCY   (Japan)

^b TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^c VAN ANDEL INSTITUTE   (United States)

^d FUJITA HEALTH UNIVERSITY   (Japan)

Author keywords

Disease resistance; Infectious pancreatic necrosis; IPN; Major histocompatibility complex; MHC; Oncorhynchus mykiss; QTL; Quantitative trait loci

Indexed keywords

INFECTIOUS PANCREATIC NECROSIS VIRUS; ONCORHYNCHUS MYKISS;

EID: 36148967247     PISSN: 0388788X     EISSN: None     Source Type: Journal    
DOI: 10.3147/jsfp.42.131     Document Type: Article

References (61)

1. Allendorf, F. W., and G. H. Thorgaard (1984): Tetraploidy and the evolution of salmonid fishes. In: Turner B. J. (ed) Evolutionary Genetics of Fishes. Plenum Press, New York, pp. 1-53.
2. Andersson, L., C. S. Haley, H. Ellegren, S. A. Knott, M. Johansson, K. Andersson, L. Andersson-Eklund, I. Edfofs-Lilja, M. Fredholm, I. Hansson, J. Hakansson, and K. Lundstrom (1994): Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science, 263, 1771-1774.
3. Aoyagi, K., J. M. Dijkstra, C. Xia, I. Denda, M. Ototake, K. Hashimoto, and T. Nakanishi (2002): Classical MHC class I genes composed of highly divergent sequence lineages share a single locus in rainbow trout (Oncorhynchus mykiss). J. Immunol., 168, 260-273.
4. Braud, V. M., D. S. Allan, and A. J. McMichael (1999): Functions of nonclassical MHC and non-MHC-encoded class I molecules. Curr. Opin. Immunol., 11, 100-108.
5. Brown, F. (1986): The classification and nomenclature of viruses: Summary of results of meetings of the International Committee on Taxonomy of Viruses in Sendai, Japan, Sept. 1984: Intervirology, 25, 141-143.
6. Churchill, G. A., and R. W. Doerge (1994): Empirical threshold values for quantitative trait mapping. Genetics, 138, 963-971.
7. Dobos, P., B. J. Hill, R. Hallett, D. T. C. Kells, H. Becht, and T. Teninges (1979): Biophysical biochemical characterization of five animal viruses with bisegmented double-stranded RNA genomes. J. Virol., 32, 593-605.
8. Doerge, R. W., and G. A. Churchill (1996): Permutation tests for multiple loci affecting a quantitative character. Genetics, 142, 285-294.
9. Danzmann, R. G., M. Cairney, M. M. Ferguson, K. Gharbi, R. Guyomard, L. Holm, B. Hoyheim, E. Leder, N. Okamoto, A. Ozaki, C. E. Rexroad, T. Sakamoto, J. B. Taggart, and R. A. Woram (2005): A comparative analysis of the rainbow trout genome with two other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae). Genome, 48, 1037-1051.
10. Dijkstra, J. M., I. Kiryu, Y. Yoshiura, A. Kumanovics, M. Kohara, N. Hayashi, and M. Ototake (2006): Polymorphism of two very similar MHC class Ib loci in rainbow trout (Oncorhynchus mykiss). Immunegenetics, 58, 152-167.
11. Edwards, M. D., T. Helentjaris, S. Wright, and C. W. Stuber (1992): Molecular-marker-facilitated investigations of quantitative trait loci in maize. Theor. Appl. Genet., 83, 765-774.
12. Falconer, D. S. (1981): Introduction to quantitative genetics, 2nd edn. Longman, London.
13. Fujiwara, A., I. Kiryu, J. M. Dijkstra, Y. Yoshiura, C. Nishida-Umehara, and M. Ototake (2003): Chromosome mapping of MHC class I in rainbow trout (Oncorhynchus mykiss). Fish Shellfish Immunol., 14, 171-175.
14. Georges, M., D. Nielsen, M. Mackinnon, A. Mishra, R. Okimoto, A. T. Pasquino, L. S. Sargeant, A. Sorensen, M. R. Steele, X. Zhao, J. E. Womack, and I. Hoeschele (1995): Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics, 139, 907-920.
15. Germain, R. N. (1994): MHC-dependent antigen processing and peptide presentation: providing ligands for T lymphocyte activation. Cell, 76, 287-299.
16. Grimholt, U., S. Larsen, R. Nordmo, P. Midtlyng, S. Kjoeglum, A. Storset, S. Saebo, and R.J. Stet (2003): MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histo-compatibility class I and class II loci. Immunogenetics, 55, 210-219.
17. Hedrick, P. W., and T. J. Kim (2000): Genetics of complex poly morphisms: parasites and maintenance of the major histo-compatibility complex variation. In: Singh R. S., Krimbas C. B. (eds.) Evolutionary genetics: from molecules to morphology. Cambridge Univ Press, Cambridge, pp. 204-234.
18. Hendel, H., S. Caillat-Zucman, H. Lebuanec, M. Carrington, S. O'Brien, J. M. Andrieu, F. Schachter, D. Zagury, J. Rappaport, C. Winkler, G. W. Nelson, and J. F. Zagury (1999): New class I and II HLA alleles strongly associated with opposite patterns of progression to AIDS. J. Immunol., 162, 6942-6946.
19. Jackson, T. R., M. M. Ferguson, R. G. Danzmann, A. G. Fishback, P. E. Ihssen, and T. J. Crease (1998): Identification of two QTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity, 80, 143-151.
20. Khoo, S. K., A. Ozaki, F. Nakamura, T. Arakawa, S. Ichimoto, R. Nickolov, T. Sakamoto, T. Akutsu, M. Mochizuki, I. Denda, and N. Okamoto (2004): Identification of a novel chromosomal region associated with infectious hematopoietic necrosis (IHN) resistance in rainbow trout Oncorhynchus mykiss. Fish Pathol., 39, 95-101.
21. Kiryu, I., J. M. Dijkstra, R. I. Sarder, A. Fujiwara, Y. Yoshiura, and M. Ototake (2005): New MHC class Ia domain lineages in rainbow trout (Oncorhynchus mykiss) which are shared with other fish species. Fish Shellfish Immunol., 18, 243-254.
22. Kjøglum, S., S. Larsen, H. G. Bakke and U. Grimholt (2006): How specific MHC class I and class II combinations affect disease resistance against infectious salmon anaemia in Atlantic salmon (Salmo salar). Fish Shellfish Immunol., 21, 431-441.
23. Lander, E. S., and D. Botstein (1989): Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics, 121, 185-199.
24. Lander, E. S., and L. Kruglyak (1995): Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat. Genet., 11, 241-247.
25. Landis E. D., Y. Palti, J. Dekoning, R. Drew, R. B. Phillips, and J. D. Hansen (2006): Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes. Immunogenetics, 58, 56-69.
26. Manly, K. F., and J. M. Olson (1999): Overview of QTL mapping software and introduction to Map Manager QT. Mamm. Genome, 10, 335-348.
27. May, B., and K. R. Johnson (1989): Composite linkage map of salmonids fishes (Salvelinus, Salmo, Oncorhynchus). In: O'Brien S. J. (ed) Genetic maps. Cold Spring Harbor, New York, pp. 4.151-4.159.
28. Mikko, S., and L. Andersson (1995): Low major histocompatibility complex class II diversity in European and North American moose. Proc. Natl. Acad. Sci. USA., 92, 4259-4263.
29. Miller, K. M., J.R. Winton, A. D. Schulze, M. K. Purcell, and T. J. Ming (2004): Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus. Environ. Biol. Fishes, 69, 307-316.
30. Miller, K. M, S. Li, T. J. Ming, K. H. Kaukinen, and A. D. Schulze (2006): The salmonid MHC class I: more ancient loci uncovered. Immunogenetics, 58, 571-589.
31. Mizuki. N., M. Ota, M. Kimura, S. Ohno, H. Ando, Y. Katsuyama, M. Yamazaki, K. Watanabe, K. Goto, S. Nakamura, S. Bahram, and H. Inoko (1997): Triplet repeat polymorphism in the transmembrane region of the MICA gene: a strong association of six GCT repetitions with Behcet disease. Proc. Natl. Acad. Sci. USA., 94, 1298-1303.
32. Nakamura. K., A. Ozaki, T. Akutsu, K. Iwai, T. Sakamoto, G. Yoshizaki, and N. Okamoto (2001): Genetic mapping of the dominant albino locus in rainbow trout (Oncorhynchus mykiss) Mol. Genet. Genomics, 265, 687-693.
33. Nichols, K. M., J. Bartholomew, and G. H. Thorgaard (2003a): Mapping multiple genetic loci associated with Ceratomyxa shasta resistance in Oncorhynchus mykiss. Dis. Aquat. Organ., 56, 145-154.
34. Nichols, K. M., W. P. Young, R. G. Danzmann, B. D. Robison, C. Rexroad, M. Noakes, R. B. Phillips, P. Bentzen, I. Spies, K. Knudsen, F. W. Allendorf, B. M. Cunningham, J. Brunelli, H. Zhang, S. Ristow, R. Drew, K. H. Brown, P. A. Wheeler, and G. H. Thorgaard (2003b): A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Anim. Genet., 34, 102-115.
35. Okamoto, N., T. Sano, R. P. Hedrick, and J. L. Fryer (1983): Antigenic relationships of selected strains of infectious pancreatic necrosis virus and eel virus European. J. Fish. Dis., 6, 19-25.
36. Okamoto, N., N. Taniguchi, Y. Seno, and T. Sano (1984): The relation between the change of quantities of infectious pancreatic necrosis virus in infected rainbow trout fry and the disease process. Fish. Pathol., 19, 1-4.
37. Okamoto, N., M. Tanaka, H. Fukuda, S. Suzuki, Y. Yasuda, and T. Sano (1987): A selected strain (RT-101) of rainbow trout, Salmo gairdneri Richardson, highly sensitive to IPN virus. Bull. Eur. Ass. Fish Pathol., 7, 2-5.
38. Okamoto, N., T. Tayama, M. Kawanobe, N. Fujiki, Y. Yasuda, and T. Sano (1993): Resistance of a rainbow trout strain to infectious pancreatic necrosis. Aquaculture, 117, 71-76.
39. O'Malley, K. G., T. Sakamoto, R. G. Danzmann, and M. M. Ferguson (2003): Quantitative trait loci for spawning date and body weight in rainbow trout: testing for conserved effects across ancestrally duplicated chromosomes. J. Hered., 94, 273-284.
40. Ozaki, A., T. Sakamoto, S. Khoo, K. Nakamura, M. R. Coimbra, T. Akutsu, and N. Okamoto (2001): Quantitative trait loci (QTL) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics, 265, 23-31.
41. Paterson, A. H., E. S. Lander, J. D. Hewitt, S. Peterson, S. E. Lincoln, and S. D. Tanksley (1988): Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature, 335, 721-726.
42. Perry, G. M., R. G. Danzmann, M. M. Ferguson, and J. P. Gibson (2001): Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss). Heredity, 86, 333-341.
43. Phillips, R. B., A. Zimmerman, M. A. Noakes, Y. Palti, M. R. Morasch, L. Eiben, S. S. Ristow, G. H. Thorgaard, and J. D. Hansen (2003): Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region. Immunogenetics, 55, 561-569.
44. Pilcher, R. S., and J. L. Fryer (1980): The viral diseases of fish: a review through 1978. Crit. Rev. Microbiol., 7, 287-364.
45. Robison, B. D., P. A. Wheeler, K. Sundin, P. Sikka, and G. H. Thorgaard (2001): Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Hered., 92, 16-22.
46. Rodriguez, M. F., S. LaPatra, S. Williams, T. Famula, and B. May (2004): Linkage maps of rainbow trout: genetic markers associated with resistance to infectious hematopoietic necrosis. Aquaculture, 241, 93-115.
47. Sakamoto, T., R. G. Danzmann, N. Okamoto, M. M. Ferguson, and P. E. Ihssen (1999): Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture, 173, 33-43.
48. Sakamoto, T., R. G. Danzmann, K. Gharbi, P. Howard, A. Ozaki, K. Sokkean, R. A. Woram, N. Okamoto, M. M. Ferguson, P. E. Ihssen, L. E. Holm, R. Guyomard, and B. Hoyheim (2000): A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics, 155, 1331-1345.
49. Sano, T. (1971): Studies on viral diseases of Japanese fishes I. Infectious pancreatic necrosis of rainbow trout: First isolation from epizootics in Japan. Bull. Japan. Soc. Sci. Fish., 37, 495-498.
50. Shiina, T., H. Inoko, and J. K. Kulski (2004): An update of the HLA genomic region, locus information and disease associations: 2004. Tissue Antigens, 64, 631-649.
51. Shiina, T., J. M. Dijkstra, S. Shimizu, A. Watanabe, K. Yanagiya, I. Kiryu, A. Fujiwara, C. Nishida-Umehara, Y. Kaba, I. Hirono, Y. Yoshiura, T. Aoki, H. Inoko, J. K. Kulski, and M. Ototake (2005): Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry. Immunogenetics, 56, 878-893.
52. Shum, B. P., L. Guethlein, L. R. Flodin, M.A. Adkison, R. P. Hedrick, R. B. Nehring, R. J. Stet, C. Secombes, and P. Parham (2001): Modes of salmonid MHC class I and II evolution differ from the primate paradigm. J. Immunol., 166, 3297-3308.
53. Sissel K., Stig L., Hege G. B., and Unni G., (2006): How specific MHC class I and class Il combinations affect disease resistance against infectious salmon anaemia in Atlantic salmon (Salmo salar). Fish Shellfish Immunol., 21, 431-441.
54. Tanksley, S. D. (1993): Mapping polygenes. Annu. Rev. Genet., 27, 205-233.
55. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Homes, A. Frijters, J. Pot, J. Peleman, and M. Kuiper (1995): AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res., 23, 4407-4414.
56. Wallny, H. J., D. Avila, L. G. Hunt, T. J. Powell, P. Riegert, J. Salomonsen, K. Skjodt, O. Vainio, F. Vilbois, M. V. Wiles, and J. Kaufman (2006): Peptide motifs of the single dominantly expressed class I molecule explain the striking MHC-determined response to Rous sarcoma virus in chickens. Proc Natl. Acad. Sci. USA., 103, 1434-1439.
57. Wiegertjes, G. F., R.J. Stet, H. K. Parmentier, and W. B. van Muiswinkel, (1996): Immunogenetics of disease resistance in fish: A comparative approach. Dev. Comp. Immunol., 20, 365-381.
58. Wolf, K., S. F. Snieszko, C. E. Dunbar, and E. Pyle (1960): Virus nature of infectious pancreatic necrosis in trout. Proc. Soc. Exp. Biol., 104, 105-108.
59. Wolf, K., and M. C. Quimby (1962): Established eurythermic line of fish cells in vitro. Science, 135, 1065-1066.
60. Young, W. P., P. A. Wheeler, V. H. Coryell, P. Keim, and G. H. Thorgaard (1998): A detailed linkage map of rainbow trout produced using doubled haploids. Genetics, 148, 839-850.
61. Zimmerman, A. M., J. P. Evenhuis, G. H. Thorgaard, and S. S. Ristow (2004): A single major chromosomal region controls natural killer cell-like activity in rainbow trout. Immunogenetics, 55, 825-835.