Amplification of plasmid DNA bound on soil colloidal particles and clay minerals by the polymerase chain reaction

Journal of Environmental Sciences

Volumn 19, Issue 11, 2007, Pages 1326-1329

  CAI, Peng ^a   HUANG, Qiao yun ^a   LU, Yan du ^a   CHEN, Wen li ^a   JIANG, Dai hua ^a   LIANG, Wei ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

adsorption; amplification; mineral; PCR; plasmid DNA; soil colloid

Indexed keywords

ADSORPTION; DILUTION; DNA; MICROORGANISMS; MINERALOGY; MOLECULAR BIOLOGY; SOILS;

MOLECULAR MICROBIAL ECOLOGY; POLYMERASE CHAIN REACTION;

BIOGEOCHEMISTRY;

ALUMINUM SILICATE; BACTERIAL DNA; BENTONITE; FERRIC HYDROXIDE; IRON DERIVATIVE; KAOLIN;

ADSORPTION; BIOGEOCHEMISTRY; DILUTION; DNA; MICROORGANISMS; MINERALOGY; MOLECULAR BIOLOGY; SOILS;

ALFISOL; BIOGEOCHEMISTRY; BROWN SOIL; CLAY MINERAL; CONCENTRATION (COMPOSITION); DILUTION; DNA; MICROORGANISM; POLYMERASE CHAIN REACTION; RED SOIL; ULTISOL;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; CLAY; COLLOID; GENETICS; METHODOLOGY; PLASMID; POLYMERASE CHAIN REACTION; SOIL;

ALUMINUM SILICATES; ANIMALS; BENTONITE; CATTLE; COLLOIDS; DNA, BACTERIAL; IRON COMPOUNDS; KAOLIN; PLASMIDS; POLYMERASE CHAIN REACTION; SOIL;

EID: 36148940669     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(07)60216-2     Document Type: Article

References (23)

1. Alvarez A., Khanna M., Toranzos A., et al. Amplification of DNA bound on clay minerals[J]. Molecular Ecology 7 (1998) 775-778
2. Birnboim H., and Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA[J]. Nucleic Acids Research 7 (1979) 1513-1523
3. Blum S., Lorenz M., and Wackernagel W. Mechanism of retarded degradation and prokaryotic origin of DNases in non sterile soils[J]. Systematic & Applied Microbiology 20 (1997) 513-521
4. Cai P., Huang Q., and Zhang X. Interactions of DNA with clay minerals and soil colloidal particles and protection against degradation by DNase[J]. Environmental Science & Technology 40 (2006) 2971-2976
5. Crecchio C., and Stotzky G. Binding of DNA on humic acids: effect on transformation of Bacillus subtilis and resistance to DNase I[J]. Soil Biology & Biochemisty 30 (1998) 1061-1067
6. Cullen D., and Hirsch P. Simple and rapid method for direct extraction of microbial DNA from soil for PCR[J]. Soil Biology & Biochemisty 30 (1998) 983-993
7. Ford S., and Olson B. Methods for detecting genetically engineered microorganisms in the environment[J]. Advances in Microbial Ecology 10 (1988) 45-79
8. Gallori E., Bazzicalupo M., Canto D., et al. Transformation of Bacillus subtilis by DNA bound on clay in non-sterile soil[J]. FEMS Microbiology Ecology 15 (1994) 119-126
9. Huang Q., Zhao Z., and Chen W. Effects of several low-molecular weight organic acids and phosphate on the adsorption of acid phosphatase by soil colloids and minerals[J]. Chemosphere 52 (2003) 571-579
10. Jain R., Burlage R., and Sayler G. Methods for detecting recombinant DNA in the environment[J]. Critical Reviews in Biotechnology 8 (1988) 33-84
11. Khanna M., and Stotzky G. Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA[J]. Applied and Environmental Microbiology 58 (1992) 1930-1939
12. Lorenz M., and Wackernagel W. Bacterial gene transfer by natural genetic transformation in the environment[J]. Microbiology Review 58 (1994) 563-602
13. Paget E., and Simonet P. On the track of natural transformation in soil[J]. FEMS Microbiology Ecology 15 (1994) 109-118
14. Picard C., Ponsonnet C., Paget E., et al. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction[J]. Applied and Environmental Microbiology 58 (1992) 2717-2722
15. Recorbet G., Picard C., Normand P., et al. Kinetics of the persistence of chromosomal DNA from genetically engineered Escherichia coli introduced into soil[J]. Applied and Environmental Microbiology 59 (1993) 4289-4294
16. Romanowski G., Lorenz M., and Wackernagel W. Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils[J]. Applied and Environmental Microbiology 59 (1993) 3438-3446
17. Smith D., and Johnson N. Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase[J]. Gene 67 (1988) 31-40
18. Stotzky G. Persistence and Biological activity in soil of insecticidal proteins from Bacillus thuringiensis and of bacterial DNA bound on clays and humic acids[J]. Journal of Environmental Quality 29 (2000) 691-705
19. Trevors J. DNA extraction from soil[J]. Microb Releases 1 (1992) 3-9
20. Tsai Y., and Olson B. Detection of low number of bacterial cells in soils and sediments by polymerase chain reaction[J]. Applied and Environmental Microbiology 58 (1992) 754-757
21. Vettori C., Paffetti D., Pietramellara G., et al. Amplification of bacterial DNA bound on clay minerals by the random amplified polymorphic DNA (RAPD) technique[J]. FEMS Microbiology Ecology 20 (1996) 251-260
22. Vettori C., Calamai L., Yoder M., et al. Adsorption and binding of AmpliTaq DNA polymerase on the clay minerals, montmorillonite and kaolinite[J]. Soil Biology & Biochemisty 31 (1999) 587-593
23. Xiong Y. Soil colloids[M] (1985), Science Press, Beijing 620