TMpro web server and web service: Transmembrane helix prediction through amino acid property analysis

Bioinformatics

Volumn 23, Issue 20, 2007, Pages 2795-2796

  Ganapathiraju, Madhavi ^a   Jursa, Christopher Jon ^b   Karimi, Hassan A ^b   Klein Seetharaman, Judith ^a,c  

^a Carnegie Mellon University   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

^c UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN;

ALGORITHM; AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; INTERNET; PREDICTION; PRIORITY JOURNAL; STATISTICAL DISTRIBUTION;

EID: 35748979116     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm398     Document Type: Article

References (4)

1. Ganapathiraju,M. et al. (2007) Transmembrane helix prediction using amino acid property features and latent semantic analysis. InCoB2007, Hong Kong SAR. http://srs1.bic.nus.edu.sg/ocs/ viewabstract.php?id=46
2. Krogh,A. et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol Biol., 305, 567-580.
3. Kyte,J. and Doolittle,R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
4. Viklund,H. and Elofsson,A. (2004) Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information. Protein Sci., 13, 1908-1917.