메뉴 건너뛰기




Volumn 23, Issue 20, 2007, Pages 2672-2677

Identification of compositionally distinct regions in genomes using the centroid method

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; INTERLEUKIN 4; MESSENGER RNA;

EID: 35748931450     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm405     Document Type: Article
Times cited : (46)

References (24)
  • 1
    • 84949479246 scopus 로고    scopus 로고
    • On the surprising behavior of distance metrics in high dimensional space
    • Proceedings of the 8th International Conference on Database Theory ICDT, London, UK, January 2001, Springer, Berlin/Heidelberg, p
    • Aggarwal,C.C. et al. (2001) On the surprising behavior of distance metrics in high dimensional space. In Proceedings of the 8th International Conference on Database Theory (ICDT), London, UK, January 2001. (Book Series: Lecture Notes in Computer Science). Springer, Berlin/Heidelberg, p. 420.
    • (2001) Book Series: Lecture Notes in Computer Science , pp. 420
    • Aggarwal, C.C.1
  • 2
    • 0036231045 scopus 로고    scopus 로고
    • Are the PE-PGRS proteins of Mycobacterium tuberculosis variable surface antigens?
    • Banu,S. et al. (2002) Are the PE-PGRS proteins of Mycobacterium tuberculosis variable surface antigens? Mol. Microbiol., 44 9-19.
    • (2002) Mol. Microbiol , vol.44 , pp. 9-19
    • Banu, S.1
  • 3
    • 0028069540 scopus 로고
    • Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen
    • Blum,G. et al. (1994) Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen. Infect. Immun., 62, 606-614.
    • (1994) Infect. Immun , vol.62 , pp. 606-614
    • Blum, G.1
  • 4
    • 0029833779 scopus 로고    scopus 로고
    • Molecular characterization of the Pseudomonias, aeruginosa serotype O5 (PAO1) B-band lipopolysaccharide gene cluster
    • Burrows,L.L. et al. (1996) Molecular characterization of the Pseudomonias, aeruginosa serotype O5 (PAO1) B-band lipopolysaccharide gene cluster. Mol. Microbiol., 22, 481-495.
    • (1996) Mol. Microbiol , vol.22 , pp. 481-495
    • Burrows, L.L.1
  • 5
    • 0036774642 scopus 로고    scopus 로고
    • Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv
    • Camus,J.C. et al. (2002) Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv. Microbiology, 148, 2967-2973.
    • (2002) Microbiology , vol.148 , pp. 2967-2973
    • Camus, J.C.1
  • 6
    • 0033039066 scopus 로고    scopus 로고
    • Learning from the genome sequence of Mycobacterium tuberculosis H37Rv
    • Cole,S.T. (1999) Learning from the genome sequence of Mycobacterium tuberculosis H37Rv. FEBS Lett., 452, 7-10.
    • (1999) FEBS Lett , vol.452 , pp. 7-10
    • Cole, S.T.1
  • 7
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • Cole,S.T. et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature, 393, 537-544.
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1
  • 9
    • 0025005169 scopus 로고
    • Deletions of chromosomal regions coding for fimbriae and hemolysins occur in vitro and in vivo in various extraintestinal Escherichia coli isolates
    • Hacker,J. et al. (1990) Deletions of chromosomal regions coding for fimbriae and hemolysins occur in vitro and in vivo in various extraintestinal Escherichia coli isolates. Microb. Pathog., 8 213-225.
    • (1990) Microb. Pathog , vol.8 , pp. 213-225
    • Hacker, J.1
  • 10
    • 0023610906 scopus 로고
    • Chromosomal-encoded siderophores are required for mouse virulence of enteropathogenic Yersinia species
    • Heesemann,J. et al. (1987) Chromosomal-encoded siderophores are required for mouse virulence of enteropathogenic Yersinia species. FEMS Microbiol. Lett., 48, 229-233.
    • (1987) FEMS Microbiol. Lett , vol.48 , pp. 229-233
    • Heesemann, J.1
  • 11
    • 0035399931 scopus 로고    scopus 로고
    • Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
    • Karlin,S. (2001) Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. Trends Microbiol., 9, 335-343.
    • (2001) Trends Microbiol , vol.9 , pp. 335-343
    • Karlin, S.1
  • 12
    • 0027207047 scopus 로고
    • Chromosomal mapping, expression and synthesis of lipopolysaccharide in Pseudomonas aeruginosa: A role for guanosine diphospho (GDP)-D-mannose
    • Lightfoot,J.L. and Lam,J.S. (1993) Chromosomal mapping, expression and synthesis of lipopolysaccharide in Pseudomonas aeruginosa: A role for guanosine diphospho (GDP)-D-mannose. Mol. Microbiol., 8, 771-782.
    • (1993) Mol. Microbiol , vol.8 , pp. 771-782
    • Lightfoot, J.L.1    Lam, J.S.2
  • 13
    • 0347756648 scopus 로고    scopus 로고
    • Islander: A database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
    • Mantri,Y. and,Williams,K.P. (2004) Islander: A database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities. Nucleic Acids Res., 32, D55-D58.
    • (2004) Nucleic Acids Res , vol.32
    • Mantri, Y.1    Williams, K.P.2
  • 14
    • 0023719858 scopus 로고
    • Differences in virulence of Mice among strains of Mycoplasma pulmonis
    • Maureen,K.D. et al. (1988) Differences in virulence of Mice among strains of Mycoplasma pulmonis. Infect. Immun., 56, 2156-2162.
    • (1988) Infect. Immun , vol.56 , pp. 2156-2162
    • Maureen, K.D.1
  • 15
    • 33646804475 scopus 로고    scopus 로고
    • Unsupervised statistical identification of genomic islands using oligonucleotide distributions with application to Vibrio genomes
    • Nag,S. et al. (2006) Unsupervised statistical identification of genomic islands using oligonucleotide distributions with application to Vibrio genomes. Sadhana, 31, 105-115.
    • (2006) Sadhana , vol.31 , pp. 105-115
    • Nag, S.1
  • 16
    • 0242349604 scopus 로고    scopus 로고
    • Helicobacter pylori cag pathogenicity island is associated with the reduced expression of interleukin-4 (IL-4) mRNA and modulation of the IL-4δ2 mRNA isoform in human gastric mucosa
    • Orsini,B. et al. (2003) Helicobacter pylori cag pathogenicity island is associated with the reduced expression of interleukin-4 (IL-4) mRNA and modulation of the IL-4δ2 mRNA isoform in human gastric mucosa. Infect. Immun., 71, 6664-6667.
    • (2003) Infect. Immun , vol.71 , pp. 6664-6667
    • Orsini, B.1
  • 17
    • 31544472392 scopus 로고    scopus 로고
    • A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria
    • Ou,H.Y. et al. (2006) A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria. Nucleic Acids Res., 34 e3.
    • (2006) Nucleic Acids Res , vol.34
    • Ou, H.Y.1
  • 18
    • 0034887748 scopus 로고    scopus 로고
    • Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
    • Sandberg,R. et al. (2001) Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier. Genome Res., 11, 1404-1409.
    • (2001) Genome Res , vol.11 , pp. 1404-1409
    • Sandberg, R.1
  • 19
    • 0034018444 scopus 로고    scopus 로고
    • Gene rearrangements in the vsa locus of Mycoplasma pulmonis
    • Shen,X. et al. (2000) Gene rearrangements in the vsa locus of Mycoplasma pulmonis. J. Bacteriol., 182, 2900-2908.
    • (2000) J. Bacteriol , vol.182 , pp. 2900-2908
    • Shen, X.1
  • 20
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan,S. et al. (1997) Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl Acad. Sci. USA 94, 9869-9874.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1
  • 21
    • 0032574728 scopus 로고    scopus 로고
    • Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
    • Sullivan,J.T. and Ronson,C.W. (1998) Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc. Natl Acad. Sci. USA, 95, 5145-5149.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 5145-5149
    • Sullivan, J.T.1    Ronson, C.W.2
  • 22
    • 0142093984 scopus 로고    scopus 로고
    • Detecting pathogenicity islands and anomalous gene clusters by iterative discriminant analysis
    • Tu,Q. and Ding,D. (2003) Detecting pathogenicity islands and anomalous gene clusters by iterative discriminant analysis. FEMS Microbiol. Lett., 221, 269-275.
    • (2003) FEMS Microbiol. Lett , vol.221 , pp. 269-275
    • Tu, Q.1    Ding, D.2
  • 23
    • 1842507580 scopus 로고    scopus 로고
    • A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I
    • Zhang,R. and Zhang,C.T. (2004) A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I. Bioinformatics, 20, 612-622.
    • (2004) Bioinformatics , vol.20 , pp. 612-622
    • Zhang, R.1    Zhang, C.T.2
  • 24
    • 0034755052 scopus 로고    scopus 로고
    • A novel method to calculate the G+C content of genomic DNA sequences
    • Zhang,C.T. et al. (2001) A novel method to calculate the G+C content of genomic DNA sequences. J. Biomol. Struct.Dyn., 19 333-341.
    • (2001) J. Biomol. Struct.Dyn , vol.19 , pp. 333-341
    • Zhang, C.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.