Ultra-rapid real-time PCR for the detection of Human Immunodeficiency Virus (HIV)

Korean Journal of Microbiology

Volumn 43, Issue 2, 2007, Pages 91-99

  Lee, Dong Woo ^a   Kim, Eul Hwan ^a   Yoo, Mi Sun ^a   Han, Sang Hoon ^a   Yoon, Byoung Su ^a  

^a Kyonggi University   (South Korea)

Author keywords

HIV; Human immunodeficiency virus; Rapid diagnosis; Ultra rapid real time PCR

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2;

EID: 35648964132     PISSN: 04402413     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (23)

1. Korean source.
2. Korean source.
3. Arens, M.Q, L.M. Mundy, D. Amsterdam, J.T. Barrett, D. Bigg, D. Bruckner, B. Hanna, H. Prince, T. Purington, T. Hanna, R. Hewitt, C. Kalinka, T. Koppes, S. Maxwell, A. Moe, M. Doymaz, M. Poulter, M.S. Tehrani, L. Simard, D.W. Carmody, J. Vidaver, C. Berger, A.H. Davis, and M.T. Alzona. 2005. Preclinical and clinical performance of the efoora test, a rapid test for detection of human immunodeficiency virus-specific antibodies. J. Clin. Microbiol. 43, 2399-2406.
4. Benoit, K-M., P. Henrivaux, J. Ruelle, N. Delferriere, M. Bodeus, and P. Goubau. 2005. Human immunodeficiency virus type 1 (HIV-1) proviral DNA load in purified CD4+ cells by LightCycler Real-time PCR. BMC Infect Dis. 5, 1471-1479.
5. Bergroth, T., A. Sonnerborg, and Z. Yun. 2005. Discrimination of lamivudine resistant minor HIV-1 variants by selective real-time PCR. J. Virol. Methods 127, 100-107.
6. Candotti, D., J. Temple, O.O. Shirley, and J.P. Allain. 2004. Multiplex real-time quantitative RT-PCR assay for hepatitis B virus, hepatitis C virus, and human immunodeficiency virus type 1. J. Virol. Methods. 118, 39-47.
7. Cho, Y.K., J.T. Kim, Y.S. Lee, Y.A. Kim, K. Namkoong, H.K. Lim, K.W. Oh, S.H. Kim, J.I. Han, C.S. Park, Y.E. Pak, C.S. Ki, J.R. Chio, H.K. Myeong, and C. Ko. 2006. Clinical evaluation of micro-scale chip-based PCR system for rapid detection of hepatitis B virus. Biosens. Bioelectron. 21, 2161-2169.
8. Davide, G., V. Francesca, G. Vitone, G. Elisa, L.P. Michele, and C.R. Maria. 2004. Quantitative detection of human immunodeficiency virus type 1(HIV-1) viral load by SYBR green real-time RT-PCR technique in HIV-1 seropositive patients. J. Virol. Methods 115, 183-189.
9. Desire, N., A. Dehee, V. Schneider, C. Jacomet, C. Goujon, P.M. Girard, W. Rozenbaum, and J.C. Nicolas. 2001. Quantification of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay. J. Clin. Microbiol. 39, 1303-1310.
10. Ghosh, M.K., L. Kuhn, J. West, K. Semrau, D. Decker, D.M. Thea, and G.M. Aldrovandi. 2003. Quantitation of Human Immunodeficiency Virus Type 1 in Breast Milk. J. Clin. Microbiol. 41, 2465-2470.
11. Guan, M.K., L.C. Hsueh, Y.K. Liang, T.J. Wen, L.C. Julius, H.L. Ming, T.J. Chang, and J.L. Hung. 2006. Development of a quantitative Light Cycler real-time RT-PCR for detection of avian reovirus. J. Virol. Methods 133, 6-13.
12. Gupta, A. and V.K. Chaudhary. 2006. Bifunctional recombinant fusion proteins for rapid detection of antibodies to both HIV-1 and HIV-2 in whole blood. BMC Biotechnol. 6, 1472-1483.
13. Luo, W., H. Yang, K. Rathbun, C.P. Pau, and C.Y. Ou. 2005. Detection of human immunodeficiency virus type 1 DNA in dried blood spots by a duplex Real-time PCR assay. J. Clin. Microbiol. 43, 1851-1857.
14. Mello, A.J. 2003. DNA amplification moves on. Nature 422, 28-29.
15. O'Shea, J., I. Chrystie, R. Cranston, J. Mullen, K. Corbett, G. Murphy, J.V. Parry, A.D. Ruiter, and J. Banatvala. 2000. Problems in the interpretation of HIV-1 viral load assays using commercial reagents. J. Med. Virol. 61, 187-194.
16. Palmer, S., A.P. Wiegand, F. Maldarelli, H. Bazmi, J.M. Mican, M. Polis, R. L. Dewar, A. Planta, S. Liu, J.A. Metcalf, J.W. Mellors, and M. Coffin. 2003. New Real-Time Reverse Transcriptase-Initiated PCR Assay with Single-Copy Sensitivity for Human Immunodeficiency Virus Type 1 RNA in Plasma. J. Clin. Microbiol. 41, 4531-4536.
17. Primer 3. http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi
18. Rouet, F., D.K. Ekouevi, M.L. Chaix, M. Burgard, A. Inwoley, T.D. Tony, C. Danel, X. Anglaret, V. Leroy, P. Msellati, F. Dabis, and C. Rouzioux. 2005. Transfer and evaluation of an automated, low-cost Real-Time Reverse Transcription-PCR test for diagnosis and monitoring of human immunodeficiency virus type 1 infection in a west African resource-limited setting. J. Clin. Microbiol. 43, 2709-2717.
19. Schutten, M., B. Van den Hoogen, M.E. van den Ende, R.A. Gruters, A.D. Osterhaus, and H.G. Niester. 2000. Development of a real-time quantitative RT-PCR for the detection of HIV-2 RNA in plasma. J. Virol. Methods 88, 81-87.
20. Simon, V., D.D. Ho, and Q.A. Karim. 2006. HIV/AIDS epidemiology, pathogenesis, prevention, and treatment. Lancet. 268, 489-504.
21. Singer, D.E., N. Kiwanuka, D. Serwadda, F. Nalugoda, L. Hird, J.B. Hoover, G. Kigozi, J.A. Malia, E.K. Calero, W. Sateren, M.L. Robb, F.W. Mangen, M. Wawer, R.H. Gray, N. Sewankambo, D.L. Birx, and N.L. Michael. 2005. Use of stored serum from uganda for development and evaluation of a human immunodeficiency virus type 1 testing algorithm involving multiple rapid immunoassays. J. Clin. Microbiol. 43, 5312-5315.
22. Teo, I.A., J.W. Chio, J. Moriese, G. Tayler, and S. Shaunak. 2002. LightCycler qPCR optimisation for low copy number target DNA. J. Immunol. Methods 270, 119-133.
23. vPCR. http://grup.cribi.unipd.it/cgi-bin/mateo/vpcr2.cgi