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Volumn 86, Issue 2, 2007, Pages 103-109

Highly expressed genes are associated with inverse antisense transcription in mouse

Author keywords

Antisense; Gene expression; Gene regulation; Mouse; Transcription

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

EID: 35548998349     PISSN: 00221333     EISSN: 00221333     Source Type: Journal    
DOI: 10.1007/s12041-007-0015-x     Document Type: Article
Times cited : (7)

References (42)
  • 1
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin A. A., Naumova N. M., Tulin A. V., Vagin V. V., Rozovsky Y. M. and Gvozdev V. A. 2001 Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr. Biol. 11, 1017-1027
    • (2001) Curr. Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel D. P. 2004 MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 0035807818 scopus 로고    scopus 로고
    • Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines
    • Billy E., Brondani V., Zhang H., Muller U. and Filipowicz W. 2001 Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines. Proc. Natl. Acad. Sci. USA 98, 14428-14433.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 14428-14433
    • Billy, E.1    Brondani, V.2    Zhang, H.3    Muller, U.4    Filipowicz, W.5
  • 4
    • 0842346470 scopus 로고    scopus 로고
    • Beyond sense: The role of antisense RNA in controlling Xist expression
    • Brown C. J. and Chow J. C. 2003 Beyond sense: the role of antisense RNA in controlling Xist expression. Semin. Cell. Dev. Biol. 14, 341-347.
    • (2003) Semin. Cell. Dev. Biol , vol.14 , pp. 341-347
    • Brown, C.J.1    Chow, J.C.2
  • 5
    • 0037382909 scopus 로고    scopus 로고
    • Antisense starts making more sense
    • Carmichael G. G. 2003 Antisense starts making more sense. Nat. Biotechnol. 21, 371-372
    • (2003) Nat. Biotechnol , vol.21 , pp. 371-372
    • Carmichael, G.G.1
  • 6
    • 0025936351 scopus 로고
    • Effects of IL-3 on promoter usage, attenuation and antisense transcription of the c-myc oncogene in the IL-3-dependent Ba/F3 early pre-B cell line
    • Chang Y., Spicer D. B. and Sonenshein G. E. 1991 Effects of IL-3 on promoter usage, attenuation and antisense transcription of the c-myc oncogene in the IL-3-dependent Ba/F3 early pre-B cell line. Oncogene 6, 1979-1982.
    • (1991) Oncogene , vol.6 , pp. 1979-1982
    • Chang, Y.1    Spicer, D.B.2    Sonenshein, G.E.3
  • 7
    • 4444376317 scopus 로고    scopus 로고
    • Over 20% of human transcripts might form sense-antisense pairs
    • Chen J., Sun M., Kent W. J., Huang X., Xie H., Wang W. et al. 2004 Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res. 32, 4812-4820.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4812-4820
    • Chen, J.1    Sun, M.2    Kent, W.J.3    Huang, X.4    Xie, H.5    Wang, W.6
  • 8
    • 15244364078 scopus 로고    scopus 로고
    • Human antisense genes have unusually short introns: Evidence for selection for rapid transcription
    • Chen J., Sun M., Hurst L. D., Carmichael G. G. and Rowley J. D. 2005a Human antisense genes have unusually short introns: evidence for selection for rapid transcription. Trends Genet. 21, 203-207.
    • (2005) Trends Genet , vol.21 , pp. 203-207
    • Chen, J.1    Sun, M.2    Hurst, L.D.3    Carmichael, G.G.4    Rowley, J.D.5
  • 9
    • 19444386412 scopus 로고    scopus 로고
    • Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts
    • Chen J., Sun M., Hurst L. D., Carmichael G. G. and Rowley J. D. 2005b Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts. Trends Genet. 21, 326-329.
    • (2005) Trends Genet , vol.21 , pp. 326-329
    • Chen, J.1    Sun, M.2    Hurst, L.D.3    Carmichael, G.G.4    Rowley, J.D.5
  • 10
    • 0037188520 scopus 로고    scopus 로고
    • A polymorphic gene nested within an intron of the tau gene: Implications for Alzheimer's disease
    • Conrad C., Vianna C., Freeman M. and Davies P. 2002 A polymorphic gene nested within an intron of the tau gene: implications for Alzheimer's disease. Proc. Natl. Acad. Sci. 99, 7751-7756.
    • (2002) Proc. Natl. Acad. Sci , vol.99 , pp. 7751-7756
    • Conrad, C.1    Vianna, C.2    Freeman, M.3    Davies, P.4
  • 11
    • 27744565709 scopus 로고    scopus 로고
    • Natural antisense as potential regulator of alternative initiation, splicing and termination
    • Enerly E., Sheng Z. and Li K. B. 2005 Natural antisense as potential regulator of alternative initiation, splicing and termination. In Silico Biol. 5, 367-77.
    • (2005) In Silico Biol , vol.5 , pp. 367-377
    • Enerly, E.1    Sheng, Z.2    Li, K.B.3
  • 12
    • 33745080545 scopus 로고    scopus 로고
    • RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals
    • Faghihi M. A. and Wahlestedt C. 2006 RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals. Genome Biol. 7, R38.
    • (2006) Genome Biol , vol.7
    • Faghihi, M.A.1    Wahlestedt, C.2
  • 13
    • 0028854931 scopus 로고
    • Naturally occurring antisense transcripts are present in chick embryo chondrocytes simultaneously with the down-regulation of the alpha 1 (I) collagen gene
    • Farrell C. M. and Lukens L. N. 1995 Naturally occurring antisense transcripts are present in chick embryo chondrocytes simultaneously with the down-regulation of the alpha 1 (I) collagen gene. J. Biol. Chem. 270, 3400-3408.
    • (1995) J. Biol. Chem , vol.270 , pp. 3400-3408
    • Farrell, C.M.1    Lukens, L.N.2
  • 14
    • 0026770382 scopus 로고
    • Differential antisense transcription from the Dictyostelium EB4 gene locus: Implications on antisense-mediated regulation of mRNA stability
    • Hildebrandt M. and Nellen W. 1992 Differential antisense transcription from the Dictyostelium EB4 gene locus: implications on antisense-mediated regulation of mRNA stability. Cell 69, 197-204.
    • (1992) Cell , vol.69 , pp. 197-204
    • Hildebrandt, M.1    Nellen, W.2
  • 15
    • 0029069318 scopus 로고
    • Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility
    • Hsieh-Li H. M., Witte D. P., Weinstein M., Brandford W., Li H. and Small K. 1995 Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility. Development. 121, 1373-1385.
    • (1995) Development , vol.121 , pp. 1373-1385
    • Hsieh-Li, H.M.1    Witte, D.P.2    Weinstein, M.3    Brandford, W.4    Li, H.5    Small, K.6
  • 16
    • 12144287461 scopus 로고    scopus 로고
    • Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
    • Kampa D., Cheng J., Kapranov P., Yamanaka M., Brubaker S., Cawley S. et al. 2004 Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res. 14, 331-342.
    • (2004) Genome Res , vol.14 , pp. 331-342
    • Kampa, D.1    Cheng, J.2    Kapranov, P.3    Yamanaka, M.4    Brubaker, S.5    Cawley, S.6
  • 17
    • 24644472515 scopus 로고    scopus 로고
    • Katayama S., Tomaru Y., Kasukawa T., Waki K., Nakanishi M., Nakamura M. et al. RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium 2005 Antisense transcription in the mammalian transcriptome. Science. 309, 1564-1566.
    • Katayama S., Tomaru Y., Kasukawa T., Waki K., Nakanishi M., Nakamura M. et al. RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium 2005 Antisense transcription in the mammalian transcriptome. Science. 309, 1564-1566.
  • 18
    • 0037673656 scopus 로고    scopus 로고
    • Kiyosawa H., Yamanaka I., Osato N., Kondo S., Hayashizaki Y., RIKEN GER Group, GSL Members and Yoshihide H. 2003 Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. 13, 1324-1334.
    • Kiyosawa H., Yamanaka I., Osato N., Kondo S., Hayashizaki Y., RIKEN GER Group, GSL Members and Yoshihide H. 2003 Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. 13, 1324-1334.
  • 19
    • 0030972389 scopus 로고    scopus 로고
    • Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts
    • Kumar M. and Carmichael G. G. 1997 Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts. Proc. Natl. Acad. Sci. USA 94, 3542-3547.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3542-3547
    • Kumar, M.1    Carmichael, G.G.2
  • 22
    • 0037453015 scopus 로고    scopus 로고
    • Molecular links between X-inactivation and autosomal imprinting: X-inactivation as a driving force for the evolution of imprinting?
    • Lee J. T. 2003 Molecular links between X-inactivation and autosomal imprinting: X-inactivation as a driving force for the evolution of imprinting? Curr. Biol. 13, 242-254.
    • (2003) Curr. Biol , vol.13 , pp. 242-254
    • Lee, J.T.1
  • 23
    • 0032932528 scopus 로고    scopus 로고
    • Tsix, a gene antisense to Xist at the X-inactivation centre
    • Lee J. T., Davidow L. S. and Warshawsky D. 1999 Tsix, a gene antisense to Xist at the X-inactivation centre. Nat. Genet. 21, 400-404.
    • (1999) Nat. Genet , vol.21 , pp. 400-404
    • Lee, J.T.1    Davidow, L.S.2    Warshawsky, D.3
  • 24
    • 0035205381 scopus 로고    scopus 로고
    • RNA Expression Analysis Using an Antisense Bacillus subtilis Genome Array
    • Lee J. M., Zhang S., Saha S., Santa Anna S., Jiang C. and Perkins J. 2001 RNA Expression Analysis Using an Antisense Bacillus subtilis Genome Array. J. Bacteriol. 183, 7371-7380.
    • (2001) J. Bacteriol , vol.183 , pp. 7371-7380
    • Lee, J.M.1    Zhang, S.2    Saha, S.3    Santa Anna, S.4    Jiang, C.5    Perkins, J.6
  • 26
    • 0026499294 scopus 로고
    • Evidence for a third transcript from the human factor VIII gene
    • Levinson B., Kenwrick S., Gamel P., Fisher K. and Gitschier J. 1992 Evidence for a third transcript from the human factor VIII gene. Genomics 14, 585-589.
    • (1992) Genomics , vol.14 , pp. 585-589
    • Levinson, B.1    Kenwrick, S.2    Gamel, P.3    Fisher, K.4    Gitschier, J.5
  • 27
    • 0034704473 scopus 로고    scopus 로고
    • Expression of alternatively spliced FGF-2 antisense RNA transcripts in the central nervous system: Regulation of FGF-2 mRNA translation
    • Li A. W. and Murphy P. R. 2000 Expression of alternatively spliced FGF-2 antisense RNA transcripts in the central nervous system: regulation of FGF-2 mRNA translation. Mol. Cell. Endocrinol. 170, 233-242.
    • (2000) Mol. Cell. Endocrinol , vol.170 , pp. 233-242
    • Li, A.W.1    Murphy, P.R.2
  • 28
    • 0030748996 scopus 로고    scopus 로고
    • Making (anti)sense of non-coding sequence conservation
    • Lipman D. J. 1997 Making (anti)sense of non-coding sequence conservation. Nucleic Acids Res. 25, 3580-3583.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3580-3583
    • Lipman, D.J.1
  • 29
    • 0028803438 scopus 로고
    • Identification of an antisense WT1 promoter in intron 1: Implications for WT1 gene regulation
    • Malik K. T., Wallace J. I., Ivins S. M. and Brown K. W. 1995 Identification of an antisense WT1 promoter in intron 1: implications for WT1 gene regulation. Oncogene 11, 1589-1595.
    • (1995) Oncogene , vol.11 , pp. 1589-1595
    • Malik, K.T.1    Wallace, J.I.2    Ivins, S.M.3    Brown, K.W.4
  • 30
    • 0030730287 scopus 로고    scopus 로고
    • Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2
    • Moore T., Constancia M., Zubair M., Bailleul B., Feil R., Sasaki H. and Reik W. 1997 Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2. Proc. Natl. Acad. Sci. USA. 94, 12509-12514.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 12509-12514
    • Moore, T.1    Constancia, M.2    Zubair, M.3    Bailleul, B.4    Feil, R.5    Sasaki, H.6    Reik, W.7
  • 31
    • 0038813723 scopus 로고    scopus 로고
    • RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts
    • Peters N. T., Rohrbach J. A., Zalewski B. A., Byrkett C. M. and Vaughn J. C. 2003 RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts. RNA 9, 698-710.
    • (2003) RNA , vol.9 , pp. 698-710
    • Peters, N.T.1    Rohrbach, J.A.2    Zalewski, B.A.3    Byrkett, C.M.4    Vaughn, J.C.5
  • 32
    • 0036731650 scopus 로고    scopus 로고
    • Alternative splicing of brain-specific PTB defines a tissue-specific isoform pattern that predicts distinct functional roles
    • Rahman L., Bliskovski V., Reinhold W. and Zajac-Kaye M. 2002 Alternative splicing of brain-specific PTB defines a tissue-specific isoform pattern that predicts distinct functional roles. Genomics 80, 245-249.
    • (2002) Genomics , vol.80 , pp. 245-249
    • Rahman, L.1    Bliskovski, V.2    Reinhold, W.3    Zajac-Kaye, M.4
  • 33
    • 0037075032 scopus 로고    scopus 로고
    • The non-coding Air RNA is required for silencing autosomal imprinted genes
    • Sleutels F., Zwart R. and Barlow D. P. 2002 The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813.
    • (2002) Nature , vol.415 , pp. 810-813
    • Sleutels, F.1    Zwart, R.2    Barlow, D.P.3
  • 34
    • 0030825876 scopus 로고    scopus 로고
    • Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene
    • Sureau A., Soret J., Guyon C., Gaillard C., Dumon S., Keller M. et al. 1997 Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene. Nucleic Acids Res. 25, 4513-4522.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4513-4522
    • Sureau, A.1    Soret, J.2    Guyon, C.3    Gaillard, C.4    Dumon, S.5    Keller, M.6
  • 35
    • 4444288436 scopus 로고    scopus 로고
    • An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region
    • Thakur N., Tiwari V. K., Thomassin H., Pandey R. R., Kanduri M., Gondor A. et al. 2004 An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region. Mol. Cell. Biol. 24, 7855-7862.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 7855-7862
    • Thakur, N.1    Tiwari, V.K.2    Thomassin, H.3    Pandey, R.R.4    Kanduri, M.5    Gondor, A.6
  • 37
    • 0038581890 scopus 로고    scopus 로고
    • Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
    • Tufarelli C., Stanley J. A., Garrick D., Sharpe J. A., Ayyub H., Wood W. G. and Higgs D. R. 2003 Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat. Genet. 34, 157-165.
    • (2003) Nat. Genet , vol.34 , pp. 157-165
    • Tufarelli, C.1    Stanley, J.A.2    Garrick, D.3    Sharpe, J.A.4    Ayyub, H.5    Wood, W.G.6    Higgs, D.R.7
  • 38
    • 24644448635 scopus 로고    scopus 로고
    • Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
    • Wang X. J., Gaasterland T. and Chua N. H. 2005 Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol. 6, R30.
    • (2005) Genome Biol , vol.6
    • Wang, X.J.1    Gaasterland, T.2    Chua, N.H.3
  • 40
    • 0242432463 scopus 로고    scopus 로고
    • Neurons but not glial cells show reciprocal imprinting of sense and antisense transcripts of Ube3a
    • Yamasaki K., Joh K., Ohta T., Masuzaki H., Ishimaru T., Mukai T. et al. 2003 Neurons but not glial cells show reciprocal imprinting of sense and antisense transcripts of Ube3a. Hum. Mol. Genet. 12, 837-847.
    • (2003) Hum. Mol. Genet , vol.12 , pp. 837-847
    • Yamasaki, K.1    Joh, K.2    Ohta, T.3    Masuzaki, H.4    Ishimaru, T.5    Mukai, T.6
  • 42
    • 33746785696 scopus 로고    scopus 로고
    • Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
    • Zhang Y., Liu X. S., Liu Q. R. and Wei L. 2006 Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res. 34, 3465-3475.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3465-3475
    • Zhang, Y.1    Liu, X.S.2    Liu, Q.R.3    Wei, L.4


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