-
1
-
-
27244437783
-
Handling marker-marker linkage disequilibrium pedigree analysis with clustered markers
-
ABECASIS, G. R., and J. E. WIGGINTON, 2005 Handling marker-marker linkage disequilibrium pedigree analysis with clustered markers. Am. J. Hum. Genet. 77: 754-767.
-
(2005)
Am. J. Hum. Genet
, vol.77
, pp. 754-767
-
-
ABECASIS, G.R.1
WIGGINTON, J.E.2
-
2
-
-
0036338150
-
Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
-
ABECASIS, G. R., S. S. CHERNY, W. O. COOKSON and L. R. CARDON, 2002 Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat. Genet. 30: 97-101.
-
(2002)
Nat. Genet
, vol.30
, pp. 97-101
-
-
ABECASIS, G.R.1
CHERNY, S.S.2
COOKSON, W.O.3
CARDON, L.R.4
-
3
-
-
33947331887
-
The cluster variation method for efficient linkage analysis on extended pedigrees
-
ALBERS, C. A., M. A. R. LEISINK and H. J. KAPPEN, 2006 The cluster variation method for efficient linkage analysis on extended pedigrees. BMC Bioinform. 7: S1.
-
(2006)
BMC Bioinform
, vol.7
-
-
ALBERS, C.A.1
LEISINK, M.A.R.2
KAPPEN, H.J.3
-
4
-
-
33645231846
-
Efficient inference of haplotypes from genotypes on a large animal pedigree
-
BARUCH, E., J. I. WELLER, M. COHEN, M. RON and E. SEROUSSI, 2006 Efficient inference of haplotypes from genotypes on a large animal pedigree. Genetics 172: 1757-1765.
-
(2006)
Genetics
, vol.172
, pp. 1757-1765
-
-
BARUCH, E.1
WELLER, J.I.2
COHEN, M.3
RON, M.4
SEROUSSI, E.5
-
6
-
-
0038558013
-
Exact genetic linkage computations for general pedigrees
-
FISHELSON, J., and D. GEIGER, 2002 Exact genetic linkage computations for general pedigrees. Bioinformatics 18: S189-S198.
-
(2002)
Bioinformatics
, vol.18
-
-
FISHELSON, J.1
GEIGER, D.2
-
7
-
-
18644375829
-
Maximum likelihood haplotyping for general pedigrees
-
FISHELSON, J., N. DOVGOLEVSKY and D. GEIGER, 2005 Maximum likelihood haplotyping for general pedigrees. Hum. Hered. 59: 41-60.
-
(2005)
Hum. Hered
, vol.59
, pp. 41-60
-
-
FISHELSON, J.1
DOVGOLEVSKY, N.2
GEIGER, D.3
-
10
-
-
4644360739
-
Conditional probability methods for haplotyping in pedigrees
-
GAO, G., I. HOESCHELE, P. SORENSEN and F. DU, 2004 Conditional probability methods for haplotyping in pedigrees. Genetics 167: 2055-2065.
-
(2004)
Genetics
, vol.167
, pp. 2055-2065
-
-
GAO, G.1
HOESCHELE, I.2
SORENSEN, P.3
DU, F.4
-
11
-
-
2542593163
-
Discovering disease genes multipoint linkage analyses via a new Markov chain Monte Carlo approach
-
GEORGE, A. W., and E. A. THOMPSON, 2003 Discovering disease genes multipoint linkage analyses via a new Markov chain Monte Carlo approach. Stat. Sci. 18: 515-535.
-
(2003)
Stat. Sci
, vol.18
, pp. 515-535
-
-
GEORGE, A.W.1
THOMPSON, E.A.2
-
12
-
-
6344271885
-
Approximate inference and constrained optimization
-
Acapulco, Mexico, pp
-
HESKES, T., C. A. ALBERS and H. J. KAPPEN, 2003 Approximate inference and constrained optimization. Proceedings of Uncertainty in AI, Acapulco, Mexico, pp. 313-320.
-
(2003)
Proceedings of Uncertainty in AI
, pp. 313-320
-
-
HESKES, T.1
ALBERS, C.A.2
KAPPEN, H.J.3
-
13
-
-
8844250042
-
Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis
-
HUANG, Q., S. SHETE and C. I. AMOS, 2004 Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis. Am. J. Hum. Genet. 75: 1106-1112.
-
(2004)
Am. J. Hum. Genet
, vol.75
, pp. 1106-1112
-
-
HUANG, Q.1
SHETE, S.2
AMOS, C.I.3
-
14
-
-
0033358743
-
Blocking-Gibbs sampling for linkage analysis in large pedigrees with many loops
-
JENSEN, C. S., and A. KONG, 1999 Blocking-Gibbs sampling for linkage analysis in large pedigrees with many loops. Am. J. Hum. Genet. 65: 885-902.
-
(1999)
Am. J. Hum. Genet
, vol.65
, pp. 885-902
-
-
JENSEN, C.S.1
KONG, A.2
-
16
-
-
1342265651
-
Statistical mechanics of low-density parity-check codes
-
KABASHIMA, Y., and D. SAAD, 2004 Statistical mechanics of low-density parity-check codes. J. Phys. A 37: R1-R43.
-
(2004)
J. Phys. A
, vol.37
-
-
KABASHIMA, Y.1
SAAD, D.2
-
17
-
-
34547459497
-
Free energy estimates of all-atom protein structures using generalized belief propagation
-
San Francisco, pp
-
KAMISETTY, H., E. P. XING and C. J. LANGMEAD, 2007 Free energy estimates of all-atom protein structures using generalized belief propagation. Proceedings of RECOMB 2007 San Francisco, pp. 366-380.
-
(2007)
Proceedings of RECOMB
, pp. 366-380
-
-
KAMISETTY, H.1
XING, E.P.2
LANGMEAD, C.J.3
-
18
-
-
35548998575
-
The cluster variation method for approximate reasoning in medical diagnosis
-
edited by G. NARDULLI and S. STRAMAGLIA. World Scientific, Singapore
-
KAPPEN, H. J., 2002 The cluster variation method for approximate reasoning in medical diagnosis, pp. 3-16 in Modeling Bio-Medical Signals, edited by G. NARDULLI and S. STRAMAGLIA. World Scientific, Singapore.
-
(2002)
Modeling Bio-Medical Signals
, pp. 3-16
-
-
KAPPEN, H.J.1
-
19
-
-
36149021742
-
A theory of cooperative phenomena
-
KIKUCHI, R., 1951 A theory of cooperative phenomena. Phys. Rev. 81: 988.
-
(1951)
Phys. Rev
, vol.81
, pp. 988
-
-
KIKUCHI, R.1
-
20
-
-
0029886532
-
Parametric and non-parametric linkage analysis: A unified multipoints approach
-
KRUGLYAK, L., M. J. DALY, M. P. REEVE- DALY and E. S. LANDER, 1996 Parametric and non-parametric linkage analysis: a unified multipoints approach. Am. J. Hum. Genet. 58: 1347-1363.
-
(1996)
Am. J. Hum. Genet
, vol.58
, pp. 1347-1363
-
-
KRUGLYAK, L.1
DALY, M.J.2
REEVE- DALY, M.P.3
LANDER, E.S.4
-
21
-
-
0023259678
-
An algorithm for automatic genotype elimination
-
LANGE, K., and T. M. GORADIA, 1987 An algorithm for automatic genotype elimination. Am. J. Hum. Genet. 40: 250-256.
-
(1987)
Am. J. Hum. Genet
, vol.40
, pp. 250-256
-
-
LANGE, K.1
GORADIA, T.M.2
-
22
-
-
0029945706
-
Descent graphs in pedigree analysis application to haplotyping, location scores, and marker-sharing statistics
-
LANGE, K., and E. SOBEL, 1996 Descent graphs in pedigree analysis application to haplotyping, location scores, and marker-sharing statistics. Am. J. Hum. Genet. 58: 1323-1337.
-
(1996)
Am. J. Hum. Genet
, vol.58
, pp. 1323-1337
-
-
LANGE, K.1
SOBEL, E.2
-
23
-
-
0004047518
-
-
Oxford University Press, London/New York/Oxford
-
LAURITZEN, S. L., 1996 Graphical Models. Oxford University Press, London/New York/Oxford.
-
(1996)
Graphical Models
-
-
LAURITZEN, S.L.1
-
24
-
-
2542631175
-
Graphical models for genetic analyses
-
LAURITZEN, S. L., and N. A. SHEEHAN, 2003 Graphical models for genetic analyses. Stat. Sci. 4: 489-514.
-
(2003)
Stat. Sci
, vol.4
, pp. 489-514
-
-
LAURITZEN, S.L.1
SHEEHAN, N.A.2
-
25
-
-
33645216459
-
An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming
-
San Diego, pp
-
LI, J., and T. JIANG, 2004 An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming. Proceedings of RECOMB04, San Diego, pp. 101-110.
-
(2004)
Proceedings of RECOMB04
, pp. 101-110
-
-
LI, J.1
JIANG, T.2
-
26
-
-
0032001728
-
Turbo decoding as an instance of Pearl's 'Belief Propagation' algorithm
-
MCELIECE, R. J., D. J. C. MACKAY and J. F. CHENG, 1998 Turbo decoding as an instance of Pearl's 'Belief Propagation' algorithm. IEEE J. Sel. Area Commun. 16: 140-152.
-
(1998)
IEEE J. Sel. Area Commun
, vol.16
, pp. 140-152
-
-
MCELIECE, R.J.1
MACKAY, D.J.C.2
CHENG, J.F.3
-
27
-
-
34249960899
-
Cluster variation method and Moebius inversion formula
-
MORITA, T., 1990 Cluster variation method and Moebius inversion formula. J. Stat. Phys. 59: 819-825.
-
(1990)
J. Stat. Phys
, vol.59
, pp. 819-825
-
-
MORITA, T.1
-
28
-
-
19544389523
-
Mega2: Data-handling for facilitating genetic linkage and association analyses
-
MUKHOPADHYAY, N., L. ALMASY, M. SCHROEDER, W. P. MULVIHILL and D. E. WEEKS, 2005 Mega2: data-handling for facilitating genetic linkage and association analyses. Bioinformatics 21: 2556-2557.
-
(2005)
Bioinformatics
, vol.21
, pp. 2556-2557
-
-
MUKHOPADHYAY, N.1
ALMASY, L.2
SCHROEDER, M.3
MULVIHILL, W.P.4
WEEKS, D.E.5
-
29
-
-
0002425879
-
Loopy belief propagation for approximate inference an empirical study
-
Stockholm, pp
-
MURPHY, K. P., Y. WEISS and M. I. JORDAN, 1999 Loopy belief propagation for approximate inference an empirical study. Proceedings of Uncertainty in AI, Stockholm, pp. 467-475.
-
(1999)
Proceedings of Uncertainty in AI
, pp. 467-475
-
-
MURPHY, K.P.1
WEISS, Y.2
JORDAN, M.I.3
-
31
-
-
23844535141
-
Cluster variation method in statistical physics and probabilistic graphical models
-
PELIZZOLA, A., 2005 Cluster variation method in statistical physics and probabilistic graphical models. J. Phys. A 38: 309-339.
-
(2005)
J. Phys. A
, vol.38
, pp. 309-339
-
-
PELIZZOLA, A.1
-
32
-
-
30344476572
-
Linkage disequilibrium across two different single-nucleotide polymorphism genome scans
-
Noordwijkerhout, The Netherlands
-
PERALTA, J. M., T. D. DYER, D. M. WARREN, J. BLANGERO and L. ALMASY, 2005 Linkage disequilibrium across two different single-nucleotide polymorphism genome scans. Genetic Analysis Workshop 14:Microsatellite and Single-Nucleotide Polymorphism, Noordwijkerhout, The Netherlands, Vol. 6(Suppl. 1), p. S86.
-
(2005)
Genetic Analysis Workshop 14:Microsatellite and Single-Nucleotide Polymorphism
, vol.6
, Issue.SUPPL. 1
-
-
PERALTA, J.M.1
DYER, T.D.2
WARREN, D.M.3
BLANGERO, J.4
ALMASY, L.5
-
33
-
-
0036097372
-
Minimum-recombinant haplotyping in pedigrees
-
QIAN, D., and L. BECKMANN, 2002 Minimum-recombinant haplotyping in pedigrees. Am. J. Hum. Genet. 70: 1434-1445.
-
(2002)
Am. J. Hum. Genet
, vol.70
, pp. 1434-1445
-
-
QIAN, D.1
BECKMANN, L.2
-
34
-
-
0036782136
-
Caution on pedigree haplotype inference with software that assumes linkage equilibrium
-
SCHAID, A. J., S. K. MCDONELL, L. WANG, J. M. CUNNINGHAM and S. N. THIBODEAU, 2002 Caution on pedigree haplotype inference with software that assumes linkage equilibrium. Am. J. Hum. Genet. 71: 992-995.
-
(2002)
Am. J. Hum. Genet
, vol.71
, pp. 992-995
-
-
SCHAID, A.J.1
MCDONELL, S.K.2
WANG, L.3
CUNNINGHAM, J.M.4
THIBODEAU, S.N.5
-
35
-
-
19544386433
-
Generalized belief propagation receiver for near-optimal detection of two-dimensional channels with memory
-
San Antonio, TX, pp
-
SHENTAL, O., N. SHENTAL, A. J. WEISS and Y. WEISS, 2004 Generalized belief propagation receiver for near-optimal detection of two-dimensional channels with memory. Proceedings of the IEEE Information Theory Workshop San Antonio, TX, pp. 225-229.
-
(2004)
Proceedings of the IEEE Information Theory Workshop
, pp. 225-229
-
-
SHENTAL, O.1
SHENTAL, N.2
WEISS, A.J.3
WEISS, Y.4
-
36
-
-
0032893464
-
Bayesian mapping of multiple quantitative trait loci from incomplete outbred offspring data
-
SILLANPÄÄ, M. J., and E. ARJAS, 1998 Bayesian mapping of multiple quantitative trait loci from incomplete outbred offspring data. Genetics 151: 1605-1619.
-
(1998)
Genetics
, vol.151
, pp. 1605-1619
-
-
SILLANPÄÄ, M.J.1
ARJAS, E.2
-
37
-
-
0036157589
-
Detection and integration of genotyping errors in statistical genetics
-
SOBEL, E., J. C. PAPP and K. LANGE, 2002 Detection and integration of genotyping errors in statistical genetics. Am. J. Hum. Genet. 70: 496-508.
-
(2002)
Am. J. Hum. Genet
, vol.70
, pp. 496-508
-
-
SOBEL, E.1
PAPP, J.C.2
LANGE, K.3
-
38
-
-
0000915362
-
Cluster variation method and image restoration problem
-
TANAKA, K., and T. MORITA, 1995 Cluster variation method and image restoration problem. Phys. Lett. A 203: 122-128.
-
(1995)
Phys. Lett. A
, vol.203
, pp. 122-128
-
-
TANAKA, K.1
MORITA, T.2
-
39
-
-
0042226484
-
Multilocus linkage analysis by blocked Gibbs sampling
-
THOMAS, A., V. ABKEVICH and A. BANSAI, 2000 Multilocus linkage analysis by blocked Gibbs sampling. Stat. Comput. 10: 259-269.
-
(2000)
Stat. Comput
, vol.10
, pp. 259-269
-
-
THOMAS, A.1
ABKEVICH, V.2
BANSAI, A.3
-
40
-
-
84972506925
-
Monte Carlo likelihood in genetic mapping
-
THOMPSON, E. A., 1994 Monte Carlo likelihood in genetic mapping. Stat. Sci. 9: 355-366.
-
(1994)
Stat. Sci
, vol.9
, pp. 355-366
-
-
THOMPSON, E.A.1
-
41
-
-
35548976916
-
-
THOMPSON, E. A., and S. C. HEATH, 1999 Estimation of conditional multilocus gene identity among relatives, pp. 95-113 in Statistics in Molecular Biology and Genetics (IMS Lecture Notes-Monograph Series, 33). Institute of Mathematical Studies, Hayward, CA
-
THOMPSON, E. A., and S. C. HEATH, 1999 Estimation of conditional multilocus gene identity among relatives, pp. 95-113 in Statistics in Molecular Biology and Genetics (IMS Lecture Notes-Monograph Series, Vol. 33). Institute of Mathematical Studies, Hayward, CA
-
-
-
-
42
-
-
0023581971
-
A deductive method of haplotype analysis in pedigrees
-
WIJSMAN, E., 1987 A deductive method of haplotype analysis in pedigrees. Am. J. Hum. Genet. 41: 356-373.
-
(1987)
Am. J. Hum. Genet
, vol.41
, pp. 356-373
-
-
WIJSMAN, E.1
-
43
-
-
1242322483
-
Rapid haplotype reconstruction in pedigrees with dense marker maps
-
WINDIG, J. J., and T. H. E. MEUWISSEN, 2004 Rapid haplotype reconstruction in pedigrees with dense marker maps. J. Anim. Breed. Genet. 121: 26-39.
-
(2004)
J. Anim. Breed. Genet
, vol.121
, pp. 26-39
-
-
WINDIG, J.J.1
MEUWISSEN, T.H.E.2
-
44
-
-
23744513375
-
Constructing freeenergy approximations and generalized belief propagation algorithms
-
YEDIDIA, J. S., W. T. FREEMAN and Y. WEISS, 2005 Constructing freeenergy approximations and generalized belief propagation algorithms. IEEE Trans. Inform. Theory 51: 2282-2312.
-
(2005)
IEEE Trans. Inform. Theory
, vol.51
, pp. 2282-2312
-
-
YEDIDIA, J.S.1
FREEMAN, W.T.2
WEISS, Y.3
-
45
-
-
12744269459
-
HAPLORE: A program for haplotype reconstruction in general pedigrees without recombination
-
ZHANG, K., F. SUN and H. ZHAO, 2005 HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination. Bioinformatics 21: 90-103.
-
(2005)
Bioinformatics
, vol.21
, pp. 90-103
-
-
ZHANG, K.1
SUN, F.2
ZHAO, H.3
|