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Volumn 249, Issue 2, 2007, Pages 271-277

Evolution probabilities and phylogenetic distance of dinucleotides

Author keywords

Analytical solution; Evolutionary distance; Stochastic evolution model

Indexed keywords

DINUCLEOTIDE;

EID: 35448988540     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2007.07.032     Document Type: Article
Times cited : (6)

References (20)
  • 1
    • 0036376015 scopus 로고    scopus 로고
    • Arndt, P.F., Burge, C.B., Hwa, T., 2002. DNA sequence evolution with neighbor-dependent mutation. RECOMB'02, Proceedings of the Sixth Annual International Conference on Computational Biology, pp. 32-38.
  • 3
    • 0025239561 scopus 로고
    • Periodicities in coding and noncoding regions of the genes
    • Arquès D.G., and Michel C.J. Periodicities in coding and noncoding regions of the genes. J. Theor. Biol. 143 (1990) 307-318
    • (1990) J. Theor. Biol. , vol.143 , pp. 307-318
    • Arquès, D.G.1    Michel, C.J.2
  • 4
    • 0027690210 scopus 로고
    • Analytical expression of the purine/pyrimidine codon probability after and before random mutations
    • Arquès D.G., and Michel C.J. Analytical expression of the purine/pyrimidine codon probability after and before random mutations. Bull. Math. Biol. 55 (1993) 1025-1038
    • (1993) Bull. Math. Biol. , vol.55 , pp. 1025-1038
    • Arquès, D.G.1    Michel, C.J.2
  • 5
    • 0029095440 scopus 로고
    • Analytical solutions of the dinucleotide probability after and before random mutations
    • Arquès D.G., and Michel C.J. Analytical solutions of the dinucleotide probability after and before random mutations. J. Theor. Biol. 175 (1995) 533-544
    • (1995) J. Theor. Biol. , vol.175 , pp. 533-544
    • Arquès, D.G.1    Michel, C.J.2
  • 7
    • 0033858879 scopus 로고    scopus 로고
    • Cytosine deamination plays a primary role in the evolution of mammalian isochores
    • Fryxell K.J., and Zuckerkandl E. Cytosine deamination plays a primary role in the evolution of mammalian isochores. Mol. Biol. Evol. 17 (2000) 1371-1383
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1371-1383
    • Fryxell, K.J.1    Zuckerkandl, E.2
  • 8
    • 0028294455 scopus 로고
    • Wide variations in neighbor-dependent substitution rates
    • Hess S.T., Blake J.D., and Blake R.D. Wide variations in neighbor-dependent substitution rates. J. Mol. Biol. 236 (1994) 1022-1033
    • (1994) J. Mol. Biol. , vol.236 , pp. 1022-1033
    • Hess, S.T.1    Blake, J.D.2    Blake, R.D.3
  • 9
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H.N. (Ed), Academic Press, New York
    • Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian protein metabolism (1969), Academic Press, New York 21-132
    • (1969) Mammalian protein metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 0001464973 scopus 로고
    • Estimation of evolutionary distances between homologous nucleotide sequences
    • Kimura M. Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl Acad. Sci. USA 78 (1981) 454-458
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 454-458
    • Kimura, M.1
  • 13
    • 0023189718 scopus 로고
    • Distance analysis helps to establish characteristic motifs in intron sequences
    • Konopka A.K., Smythers G.W., Owens J., and Maizel J.V. Distance analysis helps to establish characteristic motifs in intron sequences. Gene Anal. Tech. 4 (1987) 63-74
    • (1987) Gene Anal. Tech. , vol.4 , pp. 63-74
    • Konopka, A.K.1    Smythers, G.W.2    Owens, J.3    Maizel, J.V.4
  • 15
    • 0023054507 scopus 로고
    • New statistical approach to discriminate between protein coding and non-coding regions in DNA sequences and its evaluation
    • Michel C.J. New statistical approach to discriminate between protein coding and non-coding regions in DNA sequences and its evaluation. J. Theor. Biol. 120 (1986) 223-236
    • (1986) J. Theor. Biol. , vol.120 , pp. 223-236
    • Michel, C.J.1
  • 16
    • 33847321652 scopus 로고    scopus 로고
    • An analytical model of gene evolution with 9 mutation parameters: an application to the amino acids coded by the common circular code
    • Michel C.J. An analytical model of gene evolution with 9 mutation parameters: an application to the amino acids coded by the common circular code. Bull. Math. Biol. 69 (2007) 677-698
    • (2007) Bull. Math. Biol. , vol.69 , pp. 677-698
    • Michel, C.J.1
  • 17
    • 31944432339 scopus 로고    scopus 로고
    • A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
    • Saxonov S., Berg P., and Brutlag D.L. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl Acad. Sci. USA 103 (2006) 1412-1417
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 1412-1417
    • Saxonov, S.1    Berg, P.2    Brutlag, D.L.3
  • 18
    • 0019542835 scopus 로고
    • Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification
    • Shepherd J.C.W. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification. Proc. Natl Acad. Sci. USA 78 (1981) 1596-1600
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 1596-1600
    • Shepherd, J.C.W.1
  • 19
    • 0025299347 scopus 로고
    • The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
    • Sved J., and Bird A. The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc. Natl Acad. Sci. USA 87 (1990) 4692-4696
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 4692-4696
    • Sved, J.1    Bird, A.2
  • 20
    • 0019807817 scopus 로고
    • A model of evolutionary base substitutions and its application with special reference to rapid change of pseudogenes
    • Takahata N., and Kimura M. A model of evolutionary base substitutions and its application with special reference to rapid change of pseudogenes. Genetics 98 (1981) 641-657
    • (1981) Genetics , vol.98 , pp. 641-657
    • Takahata, N.1    Kimura, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.