Experimental transmission of Pospiviroid populations to weed species characteristic of potato and hop fields

Journal of Virology

Volumn 81, Issue 21, 2007, Pages 11891-11899

  Matousek J ^a,b   Orctova L ^a   Ptacek J ^c   Patzak, J ^d   Dedic P ^c   Steger, G ^e   Riesner, D ^e  

^a INSTITUTE OF PLANT MOLECULAR BIOLOGY   (Czech Republic)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^c Potato Research Institute   (Czech Republic)

^d Chmelarsky Institut   (Czech Republic)

^e HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

AMARANTHUS RETROFLEXUS; ANTHEMIS ARVENSIS; ARTICLE; DNA TRANSFER; HOP STUNT VIROID; HOST; MATRICARIA; MOLECULAR CLONING; MOLECULAR HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; POTATO SPINDLE TUBER; POTATO SPINDLE TUBER VIROID; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA TRANSPORT; SEQUENCE ANALYSIS; VERONICA ARGENSIS; VIROID; VIRUS CONCENTRATION; VIRUS REPLICATION; VIRUS STRAIN; VIRUS TRANSMISSION; WEED;

BASE SEQUENCE; DNA, COMPLEMENTARY; HUMULUS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; PLANT VIRUSES; PLANTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SOLANUM TUBEROSUM; VIROIDS; VIROLOGY;

AMARANTHUS RETROFLEXUS; ANTHEMIS ARVENSIS; GALINSOGA QUADRIRADIATA; HOP STUNT VIROID; HUMULUS LUPULUS; LYCOPERSICON ESCULENTUM; MATRICARIA RECUTITA; POSPIVIROID; SOLANUM TUBEROSUM; VERONICA; VIROIDS;

EID: 35448962097     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01165-07     Document Type: Article

References (39)

1. Baumstark, T., A. R. Schröder, and D. Riesner. 1997. Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation. EMBO J. 16:599-610.
2. Diener, T. O. (ed.). 1979. Viroids and viroid diseases. Wiley, New York, NY.
3. Diener, T. O. (ed.). 1987. The viroids. Plenum Press, Inc., New York, NY.
4. Diener, T. O. 1995. Origin and evolution of viroids and viroid-like satellite RNAs. Virus Genes 11:119-131.
5. Eigen, M. 1993. Viral quasispecies. Sci. Am. 269:42-49.
6. Flores, R., C. Hernandez, A. E. Martínez de Alba, J. A. Daròs, and F. Di Serio. 2005. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 43:117-139.
7. Flores, R., J. W. Randles, M. Bar-Joseph, and T. O. Díener. 1998. A proposed scheme for viroid classification and nomenclature. Arch. Virol. 143:623-629.
8. Gascuel, O. 1997. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14:685-695.
9. Gross, H. J., H. Domdey, C. Lossow, P. Jank, M. Raba, H. Alberty, and H. L. Sänger. 1978. Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273:203-208.
10. Hadidi, A., R. Flores, J. W. Randles, and J. S. Semancik (ed.). 2003. Viroids. CSIRO Publishing, Collingwood, Victoria, Australia.
11. Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
12. Hofacker, I. L. 2003. Vienna RNA secondary structure server. Nucleic Acids Res. 31:3429-3431.
13. Huson, D. H., and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
14. Itaya, A., A. Folimonov, Y. Matsuda, R. S. Nelson, and B. Ding. 2001. Potato spindle tuber viroid as inducer of RNA silencing in infected tomato. Mol. Plant-Microbe Interact. 14:1332-1334.
15. Itaya, A., X. Zhong, R. Bundschuh, Y. Qi, Y. Wang, R. Takeda, A. R. Harris, C. Molina, R. S. Nelson, and B. Ding. 2007. A structured viroid RNA is substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. J. Virol. 81:2980-2994.
16. Keese, P., and R. H. Symons. 1985. Domains in viroids: evidence of intermolecular RNA rearrangement and their contribution to viroid evolution. Proc. Natl. Acad. Sci. USA 82:4582-4586.
17. Knabel, S., H. L. Seigner, and P. R. Wallnöfer. 1999. Detection of hop latent viroid (HLVd) using the polymerase chain reaction (PCR). Gesunde Pflanzen. 51:243-249.
18. Lück, R., S. Graf, and G. Steger. 1999. Construct: a tool for thermodynamic controlled prediction of conserved secondary structure. Nucleic Acids Res. 27:4208-4217.
19. Markarian, N., H. W. Li, S. W. Ding, and J. S. Semancik. 2004. RNA silencing as related to viroid induced symptom expression. Arch. Virol. 149:397-406.
20. Martínez de Alba, A. E., R. Flores, and C. Herná ndez. 2002. Two chloroplastic viroids induce the accumulation of small RNAs associated with posttranscriptional gene silencing. J. Virol. 76:13094-13096.
21. Matoušek, J. 2003. Hop latent viroid (HLVd) microevolution: an experimental transmission of HLVd "thermomutants" to solanaceous species. Biologia Plantarum 46:607-610.
22. Matoušek, J., V. Junker, L. Vrba, J. Schubert, J. Patzak, and G. Steger. 1999. Molecular characterization and genome organization of 7SL RNA genes from hop (Humulus lupulus L.). Gene 239:173-183.
23. Matoušek, J., P. Kozlová, L. Orctová, A. Schmitz, K. Pešina, O. Bannach, N. Diermann, G. Steger, and D. Riesner. 2007. Accumulation of viroid-specific small RNAs and increase of nucleolytic activities linked to viroid-caused pathogenesis. Biol. Chem. 388:1-13.
24. Matoušek, J., L. Orctová, J. Patzak, P. Svoboda, and I. Ludvíková. 2003. Molecular sampling of hop stunt viroid (HSVd) from grapevines in hop production area in the Czech Republic and hop protection. Plant Soil Environ. 49:168-175.
25. Matoušek, J., L. Orctová, G. Steger, and D. Riesner. 2004. Biolistic inoculation of plants with viroid nucleic acids. J. Virol. Methods 122:153-164.
26. Matoušek, J., L. Orctová, G. Steger, J. Škopek, M. Moors, P. Dědič, and D. Riesner. 2004. Analysis of thermal stress-mediated PSTVd variation and biolistic inoculation of progeny of viroid "thermomutants" to tomato and Brassica species. Virology 323:9-23.
27. Matoušek, J., J. Patzak, L. Orctová, J. Schubert, L. Vrba, G. Steger, and D. Riesner. 2001. The variability of hop latent viroid as induced upon heat treatment. Virology 287:349-358.
28. Matousek, J., A. R. W. Schröder, L. Trněná, M. Reimers, T. Baumstark, P. Dědič, J. Vlasák, I. Becker, F. Kreuzaler, M. Fladung, and D. Riesner. 1994. Inhibition of viroid infection by antisense RNA expression in transgenic plants. Biol. Chem. Hoppe-Seyler 375:765-777.
29. Papaefthimiou, I., J. A. Hamilton, M. A. Denti, D. C. Baulcombe, M. Tsagris, and M. Tabler. 2001. Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of posttranscriptional gene silencing. Nucleic Acids Res. 29:2395-2400.
30. Rocheleau, L., and M. Pelchat. 2006. The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research. BMC Microbiol. 6:24.
31. Sano, T., R. Mimura, and K. Ohshima. 2001. Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease. Virus Genes 22:53-59.
32. Schnölzer, M., B. Haas, K. Ramm, H. Hofmann, and H. L. Sänger. 1985. Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV). EMBO J. 4:2181-2190.
33. Singh, R. P. 1973. Experimental host range of the potato spindle tuber "virus." Am. Potato J. 50:111-123.
34. Singh, R. P. 1985. Clones of Solanum berthaultii resistant to potato spindle tuber viroid. Phytopathology 75:1432-1434.
35. Steger, G., and D. Riesner. 2003. Properties of viroids: molecular characteristics, p. 15-29. In A. Hadidi, R. Flores, J. W. Randles, and J. S. Semancik (ed.), Viroids. CSlRO Publishing, Collingwood, Victoria, Australia.
36. Tabler, M., and M. Tsagris. 2004. Viroids: petite RNA pathogens with distinguished talents. Trends Plant Sci. 9:339-348.
37. Vance, V., and H. Vaucheret. 2001. RNA silencing in plants defense and counterdefense. Science 292:2277-2280.
38. Voinnet, O. 2001. RNA silencing as a plant immune system against viruses. Trends Genet. 17:449-459.
39. Wang, M. B., X. Y. Bian, L. M. Wu, L. X. Liu, N. A. Smith, D. Isenegger, R. M. Wu, C. Masuta, V. B. Vance, J. M. Watson, A. Rezaian, E. S. Dennis, and P. M. Waterhouse. 2004. On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proc. Natl. Acad. Sci. USA 101:3275-3280.