Surface chemistry and function of microbial biofilms

Advances in Agronomy

Volumn 76, Issue , 2002, Pages 163-199

  Chappell, M A ^a   Evangelou, V P ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 35448961746     PISSN: 00652113     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0065-2113(02)76005-7     Document Type: Review

References (127)

1. D.R Absolom F.V Lamberti Z Policova W Zingg C.J van Oss A.W Neumann Surface thermodynamics of bacterial adhesion Appl. Environ. Microbiol. 46 1983 90 97
2. G.O Abu R.M Weiner J Rice R.R Colwell Properties of an extracellular adhesive polymer from the marine bacterium, Shewanella colwelliana Biofouling 3 1991 69 84
3. D.L Allan W.M Jarrell Proton and copper adsorption to maize and soybean root cell walls Plant Physiol. 89 1988 823 832
4. D.E Amory P.G Rouxhet Surface properties of Saccharomyces cerevisiae and Saccharomyces carlsbergensis : Chemical composition, electrostatic charge, and hydrophobicity Biochem. Biophys. Acta. 938 1988 61 70
5. N Araki A Ohashi I Machdar H Harada Behaviors of nitrifiers in novel biofilm reactor employing hanging sponge-cubes as attachment site Water Sci. Technol. 39 1999 23 31
6. P Atkins Physical Chemistry 6th ed. 1998 Freeman New York
7. P Bagchi S.M Birnbaum Effect of pH on the adsorption of immunoglobulin G on anionic poly(vinyltoluene) model latex particles J. Colloid Interface Sci. 83 1981 460 478
8. J.E Banaszak D.T Reed B.E Rittman Speciation-dependent toxicity of neptunium (V) toward Chelatobacter heintzii Environ. Sci. Technol. 32 1998 1085 1091
9. E.M Barnes Jr. P Zimniak Transport of ammonium and methylammonium ions by Azobacter vinelandii J. Bacteriol. 146 1981 512 516
10. J.C Baygents J.R Glynn Jr. O Albinger B.K Biesemeyer K.L Ogden R.G Arnold Variation of surface charge density in monoclonal bacterial populations: Implications for transport through porous media Environ. Sci. Technol. 32 1998 1596 1603
11. M.-N Bellon-Fontaine N Mozes H.C van der Mei J Sjollema O Cerf R.G Rouxhet H.J Busscher A comparison of thermodynamic approaches to predict the adhesion of dairy microorganisms to solid substrata Cell. Biophysics 17 1990 93 106
12. D Bergman A.B Hooper The primary structure of cytochrome P460 of Nitrosomonas europaea : Presence of a c-heme binding motif FEBS Lett. 353 1994 324 326
13. D Bergman A.B Hooper Sequence of the gene, amoB, for the 43-kDa polypeptide of ammonia monooxygenase of Nitrosomonas europaea Biochem. Biophys. Res. Commun. 204 1994 759 762
14. T.J Beveridge R.G.E Murray Uptake and retention of metals by cell walls of Bacillus subtilis J. Bacteriol. 127 1976 1502 1518
15. P.L Bishop T Yu A microelectrode study of redox potential change in biofilms Water Sci. Technol. 39 1999 179 185
16. P Borgand G.I Bell Cell-cell adhesion: Parameters and possible mechanisms A.S Peterson C Delis F.W Wiegel Cell Surface Dynamics: Concepts and Models 1984 Dekker New York 459 493
17. S Boussiba W Dilling J Gibson Methylammonium transport in Anacystis nidulans R-2 J. Bacteriol. 160 1984 204 210
18. J.W Bowden A.M Posner J.P Quirk Ionic adsorption on variable charge mineral surfaces. Theoretical-charge development and titration curves Aust. J. Soil Res. 15 1977 121 136
19. E.T Buurman J Pennock D.W Tempest M.J Teixeira de Mattos O.M Neijssel Re-placement of potassium ions by ammonium ions in different microorganisms grown in potassium-limited chemostat culture Arch. Microbiol. 152 1989 58 63
20. F.A Carey Organic chemistry 2nd ed. 1992 McGraw-Hill New York
21. G Cevc D Marsh Phospholipid Bilayers: Physical Principles and Models 1987 Wiley New York
22. H.S Chafetz C Bucaynski Bacterially induced lithification of microbial mats Palaios. 7 1992 277 293
23. M.A Chappell V.P Evangelou Influence of added potassium on inducing ammonium fixation and inhibiting nitrification Soil Sci. 165 2000 420 426
24. M.A Chappell V.P Evangelou Influence of added potassium on ammonium selectivity/mobility with soils exhibiting vermiculitic behavior Soil Sci. 165 2000 858 868
25. L.W Clapp J.M Regan F Ali J.D Newman J.K Park D.R Noguera Activ-ity, structure, and stratification of membrane-attached methoanogrophic biofilms cometabolically degrading trichloroethylene Water Sci. Technol. 39 1999 153 161
26. A.J Clarke-Sturman J.B Pedley P.L Sturla Influence of anions on the properties of microbial polysaccharides in solution Int. J. Biol. Macromol. 8 1986 355 360
27. Y.E Collins G Stotzky Heavy metals alter the electrokinetic properties of bacteria, yeasts, and clay minerals Appl. Environ. Microbiol. 25 1992 1592 1600
28. A.J Cooke R.K Rowe B.E Rittman I.R Flemming Modeling biochemical driven mineral precipitation in anaerobic biofilms Water Sci. Technol. 39 1999 57 64
29. A.B Cooper H.W Morgan Interactions between Escherichia coli and allophane I. Adsorption. Soil Biol. Biochem. 11 1979 221 226
30. J.W Costerton Z Lewandowski D.E Caldwell D.R Korber H.M Lappin-Scott Microbial Biofilms Annu. Rev. Microbiol. 49 1995 711 745
31. D.J Cox M.J Bazin K Gull Distribution of bacteria in a continuous-flow nitrification column Soil Biol. Biochem. 12 1980 241 246
32. P.N Danese L.A Pratt R Kolter Exopolysaccharide production is required for development of Escherichia coli K-12 biofilm architecture J. Bacteriol. 182 2000 3593 3596
33. S.L Daniels L.L Kempe The separation of bacteria by adsorption onto ion exchange resins. II. Resolution of binary mixtures D Hershey Chemical Engineering in Medicine and Biology 1967 Plenum New York 391 415
34. D de Beer A Schramm Micro-environments and mass transfer phenomena in biofilms studied with microsensors Water Sci. Technol. 39 1999 173 178
35. P Delahay Double Layer and Electrode Kinetics 1977 Interscience New York
36. L Delucas C.E Bugg Calcium binding to D-glucuronate residues: Crystal structure of a hydrated calcium bromide salt of d -glucuronic acid Carbohydr. Res. 41 1975 19 29
37. J Deni M.J Pennickx Nitrification and autotrophic nitrifying bacteria in a hydrocarbon-polluted soil Appl. Environ. Microbiol. 65 1999 4008 4013
38. B.V Derjaguin L Landau A theory of the stability of strongly charged lyophobic soils and the coalescence of strongly charged particles in electrolyte solutions Acta. Physiocochim, USSR. 14 1941 633 662
39. S Diab M Shilo Effect of adhesion to particles on the survival and activity of Nitrosomonas sp Arch. Microbiol. 150 1988 387 393
40. C Drozd J Schwartzbrod Hydrophobic and electrostatic cell surface properties of cryp-tosporidium parvum Appl. Environ. Microbiol. 62 1996 1227 1232
41. P.V Dulm W Norde The adsorption of human plasma albumin on solid surfaces, with special attention to the kinetic aspects J. Colloid Interface Sci. 91 1983 248 255
42. K.J Edwards P.L Bond T.M Gihring J.F Banfield An archael iron-oxidizing extreme acidophile important in acid mine drainage Science 287 2000 1796 1799
43. V.P Evangelou Environmental Soil and Water Chemistry: Principles and Applications 1998 wiley New York
44. V.P Evangelou J Wang R.E Phillips New developments and perspectives in characterization of soil potassium by quantity-intensity (Q/I) relationships D.L Sparks Advances in Agronomy Vol. 52 1994 Academic Press San Diego 173 227
45. F.G Ferris T.J Beveridge Site specificity of metallic ion binding in Escherichia coli K-12 lipopolysaccharide Can. J. Microbiol. 32 1986 52 55
46. G.G Ferris S Schultze T.C Witten W.S Fyfe T.J Beveridge Metal interactions with microbial biofilms in acidic and neutral pH environments Appl. Environ. Microbiol. 55 1989 1249 1257
47. W.F Fett J.M Wells P Cescutti C Wijey Identification of exopolysaccharide produced by fluorescent pseudomonads associated with commercial mushroom ( Agarius bisporus ) production Appl. Environ. Microbiol. 61 2000 513 517
48. H-C Flemming Sorption sites in biofilms Water Sci. Technol. 32 1995 27 33
49. M Fletcher Comparative physiology of attached and free-living bacteria K.C Marshall Microbial Adhesion and Aggregation 1984 Springer-Verlag New York 223 232
50. E Fourest B Volesky Contribution of sulfonate groups and alginate to heavy metal biosorption by the dry biomass of Sargassum fluitans Environ. Sci. Technol. 30 1996 277 282
51. D Gadkari Nitrification in the presence of soil particles, sand, alginate beads, and agar strands Soil Biol. Biochem. 22 1990 17 21
52. C Garbisu D.O Hall M.J Llama J.L Serra Inorganic nitrogen and phosphate removal from water by free-living and polyvinyl-immobilized Phormidium laminosum in batch and continuous-flow bioreactors Enzyme Microb. Technol. 16 1994 395 401
53. G Geesey L Lang Extracellular polymers for metal binding H.L Ehrlich C.L Brierly Microbial Mineral Recovery 1990 McGraw-Hill New York 223 247
54. K.R Gilmore K.J Husovitz T Holst N.G Love Influence of organic ammonia loading on nitrifier activity and nitrification performance for a two-stage biological aerated filter system Water Sci. Technol. 39 1999 227 234
55. S.S Goldberg P.L Gainey Role of surface phenomena in nitrification Soil Sci. 80 1955 43 53
56. H Grasdalen O Smidsrod Gelation of gellan gum Carbohydr. Polym. 7 1987 371 393
57. L He B.M Tebo Surface charge properties of and Cu(II) adsorption by spores of the marine Bacillus sp. strain SG-1 Appl. Environ. Microbiol. 64 1998 1123 1129
58. C Helmer S Kunst S Juretschko M.C Schmid K.-H Schleifer M Wagner Nitrogen loss in a nitrifying biofilm system Water Sci. Technol. 39 1999 13 21
59. K.M Hsieh L.W Lion M.L Shuler Bioreactor for the study of defined interactions of toxic metals and biofilms Appl. Environ. Microbiol. 50 1985 1155 1161
60. B.A Humphrey M.R Dickson K.C Marshall Physicochemical and in situ observations on the adhesion of gliding bacteria to surfaces Arch. Microbiol. 120 1979 231 238
61. A.M James Molecular aspects of biological surfaces Chem. Soc. Rev. 8 1979 389 418
62. A.M James The electrical properties and topochemistry of bacterial cells Adv. Colloid Interface Sci. 15 1982 171 221
63. A.M James Charge properties of microbial cell surfaces N Mozes P.S Handley H.J Busscher P.G Rouxhet Microbial Cell Surface Analysis—Structural and Physicochemical Methods 1991 VCH New York 221 262
64. R.O James J.A Davis J.O Leckie Computer simulation of the conductometric and potentiometric titrations of the surface groups of ionizable latexes J. Colloid Interface Sci. 65 1978 331 344
65. P-E Jansson B Lindberg J Lindberg E Maekawa Structural studies of a polysaccharide (S-194) elaborated by Alcaligenes ATCC 31961 Carbohydr. Res. 156 1986 157 163
66. A.E Khoury K Lam B Ellis J.W Costerton Prevention and control of bacterial infections associated with medical devices ASAIO J. 38 1992 M174 M178
67. D Kleiner Bacterial ammonium transport FEMS Microbiol. Rev. 32 1985 87 100
68. R.D Knight Physics: A Contemporary Perspective Vol. 2 1997 Addison-Wesley Reading, MS (preliminary edition)
69. R Kohn Ion binding on polyuronates-alginate and pectin Pure Appl. Chem. 42 1975 371 397
70. P.J Krell T.J Beveridge The structure of bacteria and molecular biology of viruses Int. Rev. Cytol. 17 1987 15 88
71. F Kunc G Stotzky Acceleration by montmorillonite of nitrification in soil Folia Microbiol. 25 1980 106 125
72. M Lalande F Rene J.P Tissier Fouling and its control in heat exchangers in the dairy industry Biofouling. 1 1989 233 250
73. C.N Liang M.A Tabatabai Effects of trace elements on nitrification in soils J. Environ Qual. 7 1978 291 293
74. Y Liu B Capdeville Specific activity of nitrifying biofilm in water nitrification process Water Res. 30 1996 1645 1650
75. J Macura G Stotzky Effect of montmorillonite and kaolinite in nitrification in soil Folia Microbiol. 25 1980 90 105
76. K.B Medrzycka The effect of particle concentration on zeta potential in extremely dilute solutions Colliod Polym. Sci. 269 1991 85 90
77. M.W Mittleman G.G Geesey Copper-binding characteristics of exopolymers from a freshwater sediment bacteria Appl. Environ. Microbiol. 49 1985 846 851
78. E.R Morris D.A Rees G Robinson Cation-specific aggregation of carrageenan helices: Domain model of polymer gel structure J. Mol. Biol. 138 1980 349 362
79. Y.M Nelson L.W Lion M.L Schuler W.C Ghiorse Modeling oligotrophic biofilm formation and lead adsorption to biofilm components Environ. Sci. Technol. 30 1996 2027 2035
80. T Nishio T Fujimoto Kinetics of nitrification of various amounts of ammonium added to soils Soil. Biol. Biochem. 22 1990 51 55
81. W Norde J Lyklema Protein adsorption and bacterial adhesion to solid surfaces: A colloid-chemical approach Colloid Surfaces 38 1989 1 13
82. S Okabe H Satoh Y Watanabe In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes Appl. Environ. Microbiol. 65 1999 3182 3191
83. S Okabe T Itoh H Satoh Y Watanabe Analyses of spatial distributions of sulfate-reducing bacteria and their activity in aerobic wastewater biofilms Appl. Environ. Microbiol. 65 1999 5107 5116
84. K Otto H Elwing M Hermansson Effect of ionic strength on initial interactions of Escherichia coli with surfaces, studied on-line by a novel quartz crystal microbalance technique J. Bacteriol. 181 1999 5210 5218
85. H.A Painter A review of literature on inorganic nitrogen metabolism in microorganisms Water Res. 4 1970 410 424
86. R.I Papendick G.S Campbell Theory and measurement of water potential J.F Parr Water potential relations in soil microbiology 1981 SSSA Madison, WI 1 22 SSSA Spec. Publ. 9
87. J.C Parker L.W Zelazny S Sampath W.G Harris A critical evaluation of the extension of zero point of charge (ZPC) theory to soil systems Soil Sci. Soc. Am. J. 43 1979 668 676
88. A Parsegian Energy of an ion crossing a low dielectric membrane: Solutions to four relevant electrostatic problems Nature 221 1969 844 846
89. A.R Pedersen E Arvin The function of a toluene-degrading bacterial community in a waste gas trickling filter Water Sci. Technol. 39 1999 121 137
90. A.V Quinlan Prediction of the optimum pH for ammonia-N oxidation by Nitrosomonas europaea in well-aerated natural and domestic-waste waters Water Res. 18 1984 561 566
91. P.J Quinn The fluidity of cell membranes and its regulation Prog. Biophys. Mol. Biol. 38 1981 1 104
92. A.N Rai P Rowell W.D.P Stewart Evidence for an ammonium transport system in free-living and symbiotic cyanobacteria Arch. Microbiol. 137 1984 241 246
93. B.E Rittman M Pettis H.W Reeves D.A Stahl How biofilm clusters affect substrate flux and ecological selection Water Sci. Technol. 39 1999 99 105
94. I.D Robb Stereo-chemistry and function of polymers K.C Marshall Microbial Adhesion and Aggregation 1984 Springer-Verlag New York 39 50
95. E.B Roberson M.K Firestone Relationship between dessication and exopolysaccharide production in a soil Pseudomonas sp Appl. Environ. Microbiol. 58 1992 1284 1291
96. J.F Robyt Essentials of Carbohydrate Chemistry 1998 Springer-Verlag New York
97. N.J Russell P Gacesa Chemistry and biology of the alginate of mucoid strains of Pseudomonas aeruginosa in cystic fibrosis Mol. Aspects. Med. 10 1988 1 91
98. F Sano N Asakawa Y Inoue M Sakurai A dual role for intracellular trehalose in the resistance of yeast cells to water stress Cryobiol. 39 1999 80 87
99. D Schiby E Ruckenstein The role of the polarization layers in hydration forces Chem. Phys. Lett. 95 1983 435 443
100. M.J Semmens J.T Wang A.C Booth Biological regeneration of ammonium-saturated clinoptilolite. II. Mechanism of regeneration and influence of salt concentration Environ. Sci. Technol. 11 1977 260 265
101. M.A Sindhu A.H Cornfield Comparative effects of varying levels of chlorides and sulfates of sodium, potassium, calcium, and magnesium, on ammonification and nitrification during incubation of soil Plant Soil 27 1967 468 472
102. O Smidsrod A Haug Dependence upon uronic acid composition of some ion-exchange properties of alginates Acta Chem. Scand. 22 1968 1989 1997
103. J.M Stark M.K Firestone Mechanisms for soil moisture effects on activity of nitrifying bacteria Appl. Environ. Microbiol. 61 1995 218 221
104. G Stehr S Zorner B Bottcher H.P Koops Exopolymers: An ecological characteristic of a floc-attached ammonia-oxidizing bacterium Microb. Ecol. 30 1995 115 126
105. P Steinle G Stucki R Stettler K.W Hanselmann Aerobic mineralization of 2,6-dichlorophenol by Rastonia sp. Strain RK1 Appl. Environ. Microbiol. 64 1998 2566 2571
106. A.L Stepanov M.M Umarov Effect of nitrogen and phosphorous fertilizers on nitrification and denitrification in sod-podzolic soil Vestnik Mostkovskogo Universiteta 4 1984 52 54
107. S Stojkovski R.J Magee J Liesgang Molybdenum binding by Pseudomonas aeruginosa Aust. J. Chem. 39 1986 1205 1212
108. P Stoodley D de Beer H.M Lappin-Scott Influence of electric fields and pH on biofilm structure as related to the bioelectric effect Antimicrob. Agents Chemother. 41 1995 1876 1879
109. W Stumm J.J Morgan Aquatic Chemistry 2nd ed. 1981 Wiley New York
110. I Suzuki S.C Kwok U Dular Ammonia or ammonium ion as substrate for oxidation by Nitrosomonas europaea cell extracts J. Bacteriol. 120 1974 556 558
111. P Thiel P.J Estrup Metal surface reconstructions A.T Hubbard The Handbook of Surface Imaging and Visualization 1995 CRC Press Boca Raton, FL 407 432
112. S.E Underhill J.L Prosser Surface attachment of nitrifying bacteria and their inhibition by potassium ethyl xanthate Microb. Ecol. 14 1987 129 139
113. H.C van der Mei M Rosenberg H.J Busscher Assessment of microbial cell surface hydrophobicity N Mozes P.S Handley H.J Busscher P.G Rouxhet Microbial Cell Surface Analysis-Structural and Physicochemical Methods 1991 VCH New York 263 287
114. H.C van der Mei J de Vries H.J Busscher Hydrophobic and electrostatic cell surface properties of thermophilic dairy streptococci Appl. Environ. Microbiol. 59 1993 4305 4312
115. M.C.M van Loosdrecht J Lyklema W Norde G Schraa A.J.B Zehnder Elec-trophoretic mobility and hydrophobicity as a measure to predict the initial steps of bacterial adhesion Appl. Environ. Microbiol. 53 1987 1898 1903
116. M.C.M van Loosdrecht J Lyklema W Norde A.J.B Zehnder Influence of interfaces on microbial activity Microbiol. Rev. 54 1990 75 87
117. C.J van Oss Energetics of cell-cell and cell-biopolymer interactions Cell Biophys. 14 1989 1 16
118. T Vanelli D Bergmann D.M Arciero A.B Hooper Mechanism of N-oxidation and electron transfer in the ammonia oxidizing autotrophs M.E Lidstroom F.R Tabita Microbial Growth on C1 Compounds 1996 Kluwer Academic Amsterdam, The Netherlands 80 87
119. E.J.W Verwey J.Th.G Overbeek Theory of the Stability of Lyophobic Colloids 1948 Elsevier Amsterdam
120. M.A Vigeant R.M Ford Interactions between motile Escherichia coli and glass in media with various ionic strengths, as observed with a three-dimensional tracking microscope Appl. Environ. Microbiol. 63 1997 3474 3479
121. D Voet J Voet Biochemistry 2nd ed. 1995 Wiley New York
122. S.G Walker C.A Flemming F.G Ferris T.J Beveridge G.W Bailey Physicochemical interaction of Escherichia coli cell envelopes and Bacillus subtillis cell walls with two clays and ability of the composite to immobilize heavy metals from solution Appl. Environ. Microbiol. 55 1989 2976 2984
123. Z.-Y Wang Q.-Z Zhang M Konno S Saito Sol-gel transition of alginate solution by the addition of various divalent cations: 13 C-NMR spectroscopic study Biopolymers 33 1993 703 711
124. L.F Welch A.D Scott Nitrification of fixed ammonium in clay minerals as affected by added potassium Soil Sci. 90 1960 79 85
125. N Wellman S.M Fortun B.R McLeod Bacterial biofilms and the bioelectric effect Antimicrob. Agents Chemother. 40 1996 2012 2014
126. M Wrangstadh U Szewzyk J Ostling S Kjelleberg Starvation-specific formation of a peripheral exopolysaccharide by a marine Pseudomonas sp., strain S9 Appl. Environ. Microbiol. 56 1990 2065 2072
127. A Zita M Hermansson Effects of ionic strength on bacterial adhesion and stability of flocs in a wastewater activated sludge system Appl. Environ. Microbiol. 60 1994 3041 3048