CAVASS: A computer-assisted visualization and analysis software system

Journal of Digital Imaging

Volumn 20, Issue SUPPL. 1, 2007, Pages 101-118

  Grevera, George ^a   Udupa, Jayaram ^b   Odhner, Dewey ^b   Zhuge, Ying ^b   Souza, Andre ^b   Iwanaga, Tad ^b   Mishra, Shipra ^b  

^a SAINT JOSEPH S UNIVERSITY   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

3 dimensional imaging; Image analysis; Software systems; Visualization

Indexed keywords

3-DIMENSIONAL IMAGING; OPEN SOURCE; SOFTWARE SYSTEMS;

ALGORITHMS; IMAGE ANALYSIS; MEDICAL IMAGING; PARALLEL PROCESSING SYSTEMS; VISUALIZATION;

COMPUTER SOFTWARE;

ALGORITHM; ARTICLE; COMPUTER ASSISTED DIAGNOSIS; COMPUTER PROGRAM; IMAGE PROCESSING; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING;

ALGORITHMS; COMPUTER COMMUNICATION NETWORKS; COMPUTER SYSTEMS; DATABASE MANAGEMENT SYSTEMS; DIAGNOSTIC IMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; INFORMATION STORAGE AND RETRIEVAL; RADIOLOGY INFORMATION SYSTEMS; SOFTWARE; SOFTWARE DESIGN; SOFTWARE VALIDATION; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

EID: 35448936883     PISSN: 08971889     EISSN: 1618727X     Source Type: Journal    
DOI: 10.1007/s10278-007-9060-5     Document Type: Article

References (72)

1. Udupa JK: DISPLAY-A System of Programs for Two- and Three-dimensional Display of Medical Objects from CT Data. Technical Report MIPG41, Medical Image Processing Group, Department of Computer Science, SUNY/Buffalo, Buffalo, 1980
2. Udupa JK: DISPLAY82-A System of Programs for the Display of 3D Information in CT Data. Technical Report MIPG67, Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, 1983
3. Chen LS, Herman GT, Meyer CR, Reynolds RA, Udupa JK: 3D83-An easy-to-use software package for three-dimensional display from computed tomograms. In: Proceedings of IEEE Computer Society International Symposium on Medical Images and Icons, Arlington, 1984, pp 309-316
4. Udupa JK, Herman GT, Margasahayam PS, Chen LS, Meyer CR: 3D9S: A turnkey system for the display and analysis of 3D medical objects. SPIE Proc 671:154-168, 1986
5. Robb RA, Hanson DP, Karwoski RA, Larson AG, Workman EL, Stacy MC: ANALYZE: A comprehensive, operator-interactive software package for multidimensional medical image display and analysis. Comput Med Imaging Graph 13:433-454, 1989
6. Udupa JK, Odhner D, Samarasekera S, Goncalves R, lyer K, Venugopal K, Furuie S: 3DVIEWNIX: an open, transportable, multidimensional, multimodality, multiparametric imaging software system. SPIE Proc 2164:58-73, 1994
7. Udupa JK, Hung HM, Odhner D, Goncalves R: Multidimensional data format specification: A generalization of the American College of Radiology National Electric Manufacturers Association Standards. J Digit Imaging 5(l):26-45, 1992
8. Ibanez L, Schroeder W, Ng L, Cates J: The ITK Software Guide. New York: Kitware, 2003
9. Wolf I, Vetter M, Wegner I, Böttger T, Nolden M, Schöbinger M, Hastenteufel M, Kunert T, Meinzer H-P: The Medical Imaging Interaction Toolkit (MITK). Med Image Anal 9(6):594-604, 2005
10. Zhao M, Tian J, Zhu X, Xue J, Cheng Z, Zhao H: Design and implementation of a C++ toolkit for integrated medical image processing and analyzing. Proc SPIE 5367:39-47, 2004
11. Gary K, Ibanez L, Aylward S, Gobbi D, Blake MB, Cleary K: IGSTK: An open source software toolkit for image-guided surgery. Computer 39(4):46-53, 2006
12. Falcao A, Udupa JK, Samarasekera S, Sharma S, Hirsch BE, Lotufo R: User-steered image segmentation paradigms: Live wire and live lane. Graph Models Image Process 60(4):233-260, 1998
13. Falcao A, Udupa JK, Miyazawa FK: An ultra-fast user-steered image segmentation paradigm: Live-wire-on-the-fly. IEEE Trans Med Imag 19(1):55-62, 2000
14. Nyul LG, Udupa JK, Zhang X: New variants of a method of MRI scale standardization. IEEE Trans Med Imag 19(2):143-150, 2000
15. Saha PK, Udupa JK: Scale-based image filtering preserving boundary sharpness and fine structure. IEEE Trans Med Imag 20(11):1140-1155, 2001
16. Nyul LG, Udupa JK, Saha PK: Incorporating a measure of local scale in voxel-based 3-D image registration. IEEE Trans Med Imag 22(2):228-237, 2003
17. Souza A, Udupa JK, Saha PK: Volume rendering in the presence of partial volume effects. IEEE Trans Med Imag 24(2):223-235, 2005
18. Madabhushi A, Udupa JK, Souza A: Generalized scale: Theory, algorithms, and application to image inhomogeneity correction. Comput Vis Image Underst 101:100-121, 2006
19. Madabhushi A, Udupa JK: New methods of MR image intensity standardization via generalized scale. Med Phys 33(9):3426-3434, 2006
20. Udupa JK, Hung HM, Odhner D, Goncalves R: The 3DVIEWNIX Software System, Data Format Specification: A Multidimensional Extension to the ACR-NEMA Standards. Version 1.0. Technical Report MIPG177, Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, 1991
21. National Electrical Manufactures Association (NEMA): Digital Imaging and Communication in Medicine (DICOM) Part 1: Introduction and Overview. Washington, DC: NEMA, 1993
22. Altschuler MD, Censor Y, Eggermont PBB, Herman GT, Kuo YH, Lewitt RM, McKay MR, Tuy H, Udupa JK, Yau MM: Demonstration of a software package for the reconstruction of the dynamically changing structure of the human heart from cone-beam x-ray projections. J Med Syst 4(2):289-304, 1980
23. Udupa JK: Display of 3-D information in discrete 3-D scenes produced by computerized tomography. Proc IEEE 71:420-431, 1983
24. Herman GT, Udupa JK: Display of 3-D information in 3-D digital images: Computational foundations and medical applications. IEEE Comput Graph Appl 3:39-46, 1983
25. Udupa JK, Odhner D: Fast visualization, manipulation, and analysis of binary volumetric objects. IEEE Comput Graph Appl 11(6):53-62, 1991
26. Grevera GJ, Udupa JK, Odhner D: An order of magnitude faster surface rendering in software on a PC than using dedicated rendering hardware. IEEE Trans Vis Comput Graph 6(4):335-345, 2000
27. Lorensen WE, Cline HE: Marching cubes: A high resolution 3D surface construction algorithm. Comput Graph 21(4):163-169, 1987
28. Udupa JK, Odhner D: Shell rendering. IEEE Comput Graph Appl 13(6):58-67, 1993
29. Lacroute P, Levoy M: Fast volume rendering using a shear-warp factorization of the viewing transformation. In: Proceedings of SIGGRAPH. New York: ACM Press, 1994, pp 451-458
30. Falcao AX, Rocha LM, Udupa JK: Comparative analysis of shell rendering and shear-warp rendering. SPIE Proc 4681:472-482, 2002
31. Udupa JK: Interactive segmentation and boundary surface formation for 3-D digital images. Comput Graph Image Process 18:213-235, 1982
32. Odhner D, Udupa JK: Shell manipulation: Interactive alteration of multiple-material fuzzy structures. SPIE Proc 2431:35-42, 1995
33. Udupa JK: Determination of 3-D shape parameters from boundary information. Comput Graph Image Process 17:52-59, 1981
34. Nystrom I, Udupa JK, Grevera GJ, Hirsch BE: Area of and volume enclosed by digital and triangulated surfaces. SPIE Proc 4681:669-680, 2002
35. Stindel E, Udupa J, Hirsch B, Odhner D, Couture C: 3D MR image analysis of the morphology of the rear foot: Application to classification of bones. Comput Med Imaging Graph 23:75-83, 1999
36. Stindel E, Udupa J, Hirsch B, Odhner D: A characterization of the geometric architecture of the peritalar joint complex via MRI: An aid to classification of feet. IEEE Trans Med Imag 18:753-763, 1999
37. Udupa J, Hirsch B, Samarasekera S, Hillstrom H, Bauer G, Kneeland B: Analysis of in vivo 3D internal kinematics of the joints of the foot. IEEE Trans Biomed Eng 45:1387-1396, 1998
38. Grevera GJ, Udupa JK: Shape-based interpolation of multidimensional grey-level images. IEEE Trans Med Imag 15(6):881-892, 1996
39. Raya SP, Udupa JK: Shape-based interpolation of multidimensional objects. IEEE Trans Med Imag 9(l):32-42, 1990
40. Higgins WE, Morice C, Ritman EL: Shape-based interpolation of thin structures in three-dimensional images. IEEE Trans Med Imag 12(3):439-450, 1993
41. Herman GT, Zheng J, Bucholtz CA: Shape-based interpolation. IEEE Comput Graph Appl 12(3):69-79, 1992
42. Treece GM: Volume Measurement and Surface Visualisation in Sequential Freehand 3D Ultrasound. Ph.D. Thesis, Cambridge University, 2000
43. Wells WM III, Viola P, Atsumi H, Makajima S, Kikinis R: Multi-modal volume registration by maximization of mutual information. Med Image Anal 1(1):35-51, 1996
44. Lauchaud JO, Montanvert A: Continuous analogs of digital boundaries: A topological approach to iso-surfaces. Graph Models 62(3):129-164, 2000
45. Gerig G, Kubler O, Kikinis R, Jolesz FA: Nonlinear anisotropic filtering of MRI data. IEEE Trans Med Imag 11(2):221-232, 1992
46. Saha PK, Udupa JK: Scale-based image filtering preserving boundary sharpness and fine structure. IEEE Trans Med Imag 20(11):1140-1155, 2001
47. Perona P, Malik J: Scale-space and edge detection using anisotropic diffusion. IEEE Trans Pattern Anal Mach Intell 12(7):629-639, 1990
48. Zhuge Y, Udupa JK, Liu J, Saha PK, Iwanaga T: Scale-based method for correcting background intensity variation in acquired images. Proc SPIE 4684:1103-1111, 2002
49. Udupa JK: Multidimensional digital boundaries. CVGIP Graph Models Image Process 50(4):311-323, 1994
50. Udupa JK, Srihari SN, Herman GT: Boundary detection in multidimensions. IEEE Trans Pattern Anal Mach Intell 4:41-50, 1982
51. Boykov Y, Veksler O, Zabih R: Fast approximate energy minimization via graph cuts. IEEE Trans Pattern Anal Mach Intell 23:1222-1239, 2001
52. Udupa J, Samarasekera S: Fuzzy connectedness and object definition: Theory, algorithms, and applications in image segmentation. Graph Models Image Process 58:246-261, 1996
53. Saha P, Udupa J, Odhner D: Scale-based fuzzy connected image segmentation: Theory, algorithms and validation. Comput Vis Image Underst 77:145-174, 2000
54. Saha P, Udupa J: Relative fuzzy connectedness among multiple objects: Theory, algorithms, and applications in image segmentation. Comput Vis Image Underst 82:42-56, 2001
55. Saha P, Udupa J: Fuzzy connected object delineation: Axiomatic path strength definition and the case of multiple seeds. Comput Vis Image Underst 83:275-295, 2001
56. Udupa J, Saha P, Lotufo R: Relative fuzzy connectedness and object definition: Theory, algorithms, and applications in image segmentation. IEEE Trans Pattern Anal Mach Intell 24:1485-1500, 2002
57. Jones T: Image-Based Ventricular Blood Flow Analysis. Doctoral Dissertation, University of Pennsylvania, 1998
58. Cutrona J, Bonnet N: Two methods for semi-automatic image segmentation based on fuzzy connectedness and watersheds. France-Iberic Microscopy Congress, Barcelona, 2001, pp 23-24
59. He R, Narayana P: Detection and delineation of multiple sclerosis lesions in gadolinium-enhanced 3D Tl-weighted MRI data. In: Proceedings of IEEE Symposium on Computer Based Medical Systems, 2000
60. Aldeliesten T, Niessen W, Vincken K, Maintz J, Jansen F, van Nieuwenhuizen O, Viergever M: Objective and reproducible segmentation and quantification of tuberous sclerosis lesions in FLAIR brain MR images. Proc SPIE 4322:1509-1518, 2001
61. Jin Y, Laine A, Imielinska C: An adaptive speed term based on homogeneity for level-set segmentation. Proc SPIE 4684(1):383-390, 2002
62. Henn S, Lemole MG, Ferreira MAT, Gonzalez FL, Schornak M, Preul MC, Spetzler RF: Interactive stereoscopic virtual reality: a new tool for neurosurgical education. J Neurosurg 96(1):144-149, 2002
63. Sethian J: Level Set Methods. Cambridge: Cambridge University Press, 1996
64. Raya SP, Udupa JK, Barrett WA: A PC-based 3D imaging system: algorithms, software, and hardware considerations. Comput Med Imaging Graph 14(5):353-370, 1990
65. Frieder G, Gordon D, Reynolds RA: Back-to-front display of voxel-based objects. IEEE Comput Graph Appl 5:52-60, 1985
66. Mockus A, Fielding RT, Herbsleb JD: Two case studies of open source software development: Apache and Mozilla. ACM Trans Softw Eng Methodol 11(3):309-346, 2002
67. Cochran S: wxWindows 2.2 offers cross-platform alternative to Java. Dr Dobb's J, August 2000
68. Zeitlin V: The wxWindows cross-platform framework. Dr Dobb's J, May 2001
69. Rampersad T: wxWindows for cross-platform coding. Linux J 2003(111):6, 2003
70. Udupa JK, Grevera GJ, Odhner D, Zhuge Y, Souza A, Mishra S, Iwanaga T: CAVASS: a computer-assisted visualization and analysis software system-image processing aspects. SPIE Proc 6509, 2007
71. Grevera GJ, Udupa JK, Odhner D, Zhuge Y, Souza A, Mishra S, Iwanaga T: CAVASS: a computer assisted visualization and analysis software system-visualization aspects. SPIE Proc 6509, 2007
72. Grevera GJ, Udupa JK, Odhner D, Zhuge Y, Souza A, Mishra S, Iwanaga T: Introducing CAVASS: a computer-assisted visualization and analysis software system. SPIE Proc 6516, 2007