-
2
-
-
0041932005
-
Aminoglycoside (Neomycin) preference is for A-form nucleic acids, not just RNA: Results from a competition dialysis study
-
Arya D.P., Xue L., and Willis B. Aminoglycoside (Neomycin) preference is for A-form nucleic acids, not just RNA: Results from a competition dialysis study. J. Am. Chem. Soc. 125 (2003) 10148-10149
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10148-10149
-
-
Arya, D.P.1
Xue, L.2
Willis, B.3
-
3
-
-
33846627810
-
Energetic basis of molecular recognition in a DNA aptamer
-
Bishop G.R., Ren J., Polander B.C., Jeanfreau B.D., Trent J.O., and Chaires J.B. Energetic basis of molecular recognition in a DNA aptamer. Biophys. Chem. 126 1-3 (2007) 165-175
-
(2007)
Biophys. Chem.
, vol.126
, Issue.1-3
, pp. 165-175
-
-
Bishop, G.R.1
Ren, J.2
Polander, B.C.3
Jeanfreau, B.D.4
Trent, J.O.5
Chaires, J.B.6
-
4
-
-
0025281866
-
Study of strong to ultratight protein interactions using differential scanning calorimetry
-
Brandts J.F., and Lin L.-N. Study of strong to ultratight protein interactions using differential scanning calorimetry. Biochemistry 29 (1990) 6927-6940
-
(1990)
Biochemistry
, vol.29
, pp. 6927-6940
-
-
Brandts, J.F.1
Lin, L.-N.2
-
5
-
-
0002561369
-
Application of equilibrium binding methods to elucidate the sequence specificity of antibiotic binding to DNA
-
Hurley L.H. (Ed), JAI Press Inc, Greenwich, CT
-
Chaires J.B. Application of equilibrium binding methods to elucidate the sequence specificity of antibiotic binding to DNA. In: Hurley L.H. (Ed). "Advances in DNA Sequence-Specific Agents" Vol. 1 (1992), JAI Press Inc, Greenwich, CT 3-23
-
(1992)
"Advances in DNA Sequence-Specific Agents"
, vol.1
, pp. 3-23
-
-
Chaires, J.B.1
-
6
-
-
0030465221
-
Dissecting the free energy of drug binding to DNA
-
Chaires J.B. Dissecting the free energy of drug binding to DNA. Anti-Cancer Drug Des. 11 (1996) 569-580
-
(1996)
Anti-Cancer Drug Des.
, vol.11
, pp. 569-580
-
-
Chaires, J.B.1
-
7
-
-
4143080522
-
Energetics of drug-DNA interactions
-
Chaires J.B. Energetics of drug-DNA interactions. Biopolymers 44 (1997) 201-215
-
(1997)
Biopolymers
, vol.44
, pp. 201-215
-
-
Chaires, J.B.1
-
8
-
-
0034881197
-
Analysis and interpretation of ligand-DNA binding isotherms
-
Chaires J.B. Analysis and interpretation of ligand-DNA binding isotherms. Methods Enzymol. 340 (2001) 3-22
-
(2001)
Methods Enzymol.
, vol.340
, pp. 3-22
-
-
Chaires, J.B.1
-
9
-
-
7444269235
-
Nucleic acid binding molecules: A competition dialysis assay for the study of structure-selective ligand binding to nucleic acids
-
Beaucage S.L., Bergstrom D.E., Glick G.D., and Jones R.A. (Eds), John Wiley & Sons, New York
-
Chaires J.B. Nucleic acid binding molecules: A competition dialysis assay for the study of structure-selective ligand binding to nucleic acids. In: Beaucage S.L., Bergstrom D.E., Glick G.D., and Jones R.A. (Eds). "Current Protocols in Nucleic Acid Chemistry" Vol. 2 (2002), John Wiley & Sons, New York 831-838
-
(2002)
"Current Protocols in Nucleic Acid Chemistry"
, vol.2
, pp. 831-838
-
-
Chaires, J.B.1
-
10
-
-
32644489370
-
Energetics of Anthracycline-DNA interactions
-
Demeunynck M., Bailly C., and Wilson W.D. (Eds), Wiley-VCH, Weinheim, Germany
-
Chaires J.B. Energetics of Anthracycline-DNA interactions. In: Demeunynck M., Bailly C., and Wilson W.D. (Eds). "Small Molecule DNA and RNA Binders: From Small Molecules to Drugs" Vol. 2 (2003), Wiley-VCH, Weinheim, Germany 461-481
-
(2003)
"Small Molecule DNA and RNA Binders: From Small Molecules to Drugs"
, vol.2
, pp. 461-481
-
-
Chaires, J.B.1
-
11
-
-
22144448571
-
Competition dialysis: An assay to measure the structural selectivity of drug-nucleic acid interactions
-
Chaires J.B. Competition dialysis: An assay to measure the structural selectivity of drug-nucleic acid interactions. Curr. Med. Chem. Anticancer Agents 5 (2005) 339-352
-
(2005)
Curr. Med. Chem. Anticancer Agents
, vol.5
, pp. 339-352
-
-
Chaires, J.B.1
-
12
-
-
33645613755
-
Structural selectivity of drug-nucleic acid interactions probed by competition dialysis
-
Waring M.J., and Chaires J.B. (Eds), Springer-Verlag, Berlin
-
Chaires J.B. Structural selectivity of drug-nucleic acid interactions probed by competition dialysis. In: Waring M.J., and Chaires J.B. (Eds). "DNA Binders and Related Subjects" Vol. 253 (2005), Springer-Verlag, Berlin 33-54
-
(2005)
"DNA Binders and Related Subjects"
, vol.253
, pp. 33-54
-
-
Chaires, J.B.1
-
13
-
-
33747802145
-
A thermodynamic signature for drug-DNA binding mode
-
Chaires J.B. A thermodynamic signature for drug-DNA binding mode. Arch. Biochem. Biophys. 453 (2006) 26-31
-
(2006)
Arch. Biochem. Biophys.
, vol.453
, pp. 26-31
-
-
Chaires, J.B.1
-
14
-
-
54349124438
-
Thermal denaturation of drug-DNA complexes: Tools and tricks
-
Waring M.J. (Ed), Royal Society of Chemistry
-
Chaires J.B., and Shi X. Thermal denaturation of drug-DNA complexes: Tools and tricks. In: Waring M.J. (Ed). "Sequence-specific DNA Binding Agents" (2006), Royal Society of Chemistry 130-151
-
(2006)
"Sequence-specific DNA Binding Agents"
, pp. 130-151
-
-
Chaires, J.B.1
Shi, X.2
-
15
-
-
0015153612
-
Statistical thermodynamics of nucleic acid melting transitions with coupled binding equilibria
-
Crothers D.M. Statistical thermodynamics of nucleic acid melting transitions with coupled binding equilibria. Biopolymers 10 (1971) 2147-2160
-
(1971)
Biopolymers
, vol.10
, pp. 2147-2160
-
-
Crothers, D.M.1
-
16
-
-
0036647051
-
Thermodynamics of drug-DNA interactions
-
Haq I. Thermodynamics of drug-DNA interactions. Arch. Biochem. Biophys. 403 (2002) 1-15
-
(2002)
Arch. Biochem. Biophys.
, vol.403
, pp. 1-15
-
-
Haq, I.1
-
17
-
-
0343167423
-
Drug-DNA recognition: Energetics and implications for design
-
Haq I., and Ladbury J. Drug-DNA recognition: Energetics and implications for design. J. Mol. Recognit. 13 (2000) 188-197
-
(2000)
J. Mol. Recognit.
, vol.13
, pp. 188-197
-
-
Haq, I.1
Ladbury, J.2
-
18
-
-
0034581523
-
Parsing the free energy of drug-DNA interactions
-
Haq I., Jenkins T.C., Chowdhry B.Z., Ren J., and Chaires J.B. Parsing the free energy of drug-DNA interactions. Methods Enzymol. 323 (2000) 373-405
-
(2000)
Methods Enzymol.
, vol.323
, pp. 373-405
-
-
Haq, I.1
Jenkins, T.C.2
Chowdhry, B.Z.3
Ren, J.4
Chaires, J.B.5
-
19
-
-
0031304271
-
Optical absorbance and fluorescence techniques for measuring drug-DNA interactions
-
Fox K.R. (Ed), Humana Press, Totowa, NJ
-
Jenkins T.C. Optical absorbance and fluorescence techniques for measuring drug-DNA interactions. In: Fox K.R. (Ed). "Drug-DNA Interaction Protocols" Vol. 90 (1997), Humana Press, Totowa, NJ 195-218
-
(1997)
"Drug-DNA Interaction Protocols"
, vol.90
, pp. 195-218
-
-
Jenkins, T.C.1
-
21
-
-
0027318084
-
Coralyne binds tightly to both T.A.T- and C.G.C(+)-containing DNA triplexes
-
Lee J.S., Latimer L.J., and Hampel K.J. Coralyne binds tightly to both T.A.T- and C.G.C(+)-containing DNA triplexes. Biochemistry 32 (1993) 5591-5597
-
(1993)
Biochemistry
, vol.32
, pp. 5591-5597
-
-
Lee, J.S.1
Latimer, L.J.2
Hampel, K.J.3
-
23
-
-
0014202608
-
A fluorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization
-
LePecq J.B., and Paoletti C. A fluorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization. J. Mol. Biol. 27 (1967) 87-106
-
(1967)
J. Mol. Biol.
, vol.27
, pp. 87-106
-
-
LePecq, J.B.1
Paoletti, C.2
-
24
-
-
0017116135
-
Theoretical calculations of the helix-coil transition of DNA in the presence of large, cooperatively binding ligands
-
McGhee J.D. Theoretical calculations of the helix-coil transition of DNA in the presence of large, cooperatively binding ligands. Biopolymers 15 (1976) 1345-1375
-
(1976)
Biopolymers
, vol.15
, pp. 1345-1375
-
-
McGhee, J.D.1
-
25
-
-
0018732097
-
Ethidium fluorescence assays. Part II. Enzymatic studies and DNA-protein interactions
-
Morgan A.R., Evans D.H., Lee J.S., and Pulleyblank D.E. Ethidium fluorescence assays. Part II. Enzymatic studies and DNA-protein interactions. Nucleic Acids Res. 7 (1979) 571-594
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 571-594
-
-
Morgan, A.R.1
Evans, D.H.2
Lee, J.S.3
Pulleyblank, D.E.4
-
26
-
-
0018700913
-
Ethidium fluorescence assays. Part I. Physicochemical studies
-
Morgan A.R., Lee J.S., Pulleyblank D.E., Murray N.L., and Evans D.H. Ethidium fluorescence assays. Part I. Physicochemical studies. Nucleic Acids Res. 7 (1979) 547-568
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 547-568
-
-
Morgan, A.R.1
Lee, J.S.2
Pulleyblank, D.E.3
Murray, N.L.4
Evans, D.H.5
-
27
-
-
0016686451
-
Interactions of heteroaromatic compounds with nucleic acids. 1. The influence of heteroatoms and polarizability on the base specificity of intercalating ligands
-
Muller W., and Crothers D.M. Interactions of heteroaromatic compounds with nucleic acids. 1. The influence of heteroatoms and polarizability on the base specificity of intercalating ligands. Eur. J. Biochem. 54 (1975) 267-277
-
(1975)
Eur. J. Biochem.
, vol.54
, pp. 267-277
-
-
Muller, W.1
Crothers, D.M.2
-
28
-
-
0034581194
-
Kinetic, equilibrium and thermodynamic analysis of macromolecule interactions with BIACORE
-
Myszka D.G. Kinetic, equilibrium and thermodynamic analysis of macromolecule interactions with BIACORE. Methods Enzymol. 323 (2000) 325-332
-
(2000)
Methods Enzymol.
, vol.323
, pp. 325-332
-
-
Myszka, D.G.1
-
29
-
-
3242715653
-
Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding
-
Persil O., Santai C.T., Jain S.S., and Hud N.V. Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding. J. Am. Chem. Soc. 126 (2004) 8644-8645
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8644-8645
-
-
Persil, O.1
Santai, C.T.2
Jain, S.S.3
Hud, N.V.4
-
30
-
-
0033922698
-
Analysis of drug-DNA binding data
-
Qu X., and Chaires J.B. Analysis of drug-DNA binding data. Methods Enzymol. 321 (2000) 353-369
-
(2000)
Methods Enzymol.
, vol.321
, pp. 353-369
-
-
Qu, X.1
Chaires, J.B.2
-
31
-
-
34247492023
-
Competition dialysis: A method for the study of structural selective nucleic acid binding
-
Ragazzon P.A., Garbett N.C., and Chaires J.B. Competition dialysis: A method for the study of structural selective nucleic acid binding. Methods 42 2 (2007) 173-182
-
(2007)
Methods
, vol.42
, Issue.2
, pp. 173-182
-
-
Ragazzon, P.A.1
Garbett, N.C.2
Chaires, J.B.3
-
32
-
-
0033534146
-
Sequence and structural selectivity of nucleic acid binding ligands
-
Ren J., and Chaires J.B. Sequence and structural selectivity of nucleic acid binding ligands. Biochemistry 38 (1999) 16067-16075
-
(1999)
Biochemistry
, vol.38
, pp. 16067-16075
-
-
Ren, J.1
Chaires, J.B.2
-
33
-
-
0034891957
-
Rapid screening of structurally selective ligand binding to nucleic acids
-
Ren J., and Chaires J.B. Rapid screening of structurally selective ligand binding to nucleic acids. Methods Enzymol. 340 (2001) 99-108
-
(2001)
Methods Enzymol.
, vol.340
, pp. 99-108
-
-
Ren, J.1
Chaires, J.B.2
-
34
-
-
0034713855
-
Energetics of intercalation reactions
-
Ren J., Jenkins T.C., and Chaires J.B. Energetics of intercalation reactions. Biochemistry 39 (2000) 8439-8447
-
(2000)
Biochemistry
, vol.39
, pp. 8439-8447
-
-
Ren, J.1
Jenkins, T.C.2
Chaires, J.B.3
-
35
-
-
33645319676
-
Overcoming roadblocks in lead optimization: A thermodynamic perspective
-
Ruben A.J., Kiso Y., and Freire E. Overcoming roadblocks in lead optimization: A thermodynamic perspective. Chem. Biol. Drug Des. 67 (2006) 2-4
-
(2006)
Chem. Biol. Drug Des.
, vol.67
, pp. 2-4
-
-
Ruben, A.J.1
Kiso, Y.2
Freire, E.3
-
36
-
-
84969001783
-
The attraction of proteins for small molecules and ions
-
Scatchard G. The attraction of proteins for small molecules and ions. Ann. N.Y. Acad. Sci. 51 (1949) 660-672
-
(1949)
Ann. N.Y. Acad. Sci.
, vol.51
, pp. 660-672
-
-
Scatchard, G.1
-
37
-
-
33947476272
-
The factors affecting the stability of hydrogen-bonded polypeptide structures in solution
-
Schellman J.A. The factors affecting the stability of hydrogen-bonded polypeptide structures in solution. J. Phys. Chem. 62 (1958) 1485-1494
-
(1958)
J. Phys. Chem.
, vol.62
, pp. 1485-1494
-
-
Schellman, J.A.1
-
38
-
-
32644448247
-
Sequence- and structural-selective nucleic acid binding revealed by the melting of mixtures
-
Shi X., and Chaires J.B. Sequence- and structural-selective nucleic acid binding revealed by the melting of mixtures. Nucleic Acids Res. 34 (2006) e14
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Shi, X.1
Chaires, J.B.2
-
39
-
-
0034650726
-
Exact analysis of competition ligand binding by displacement isothermal titration calorimetry
-
Sigurskjold B.W. Exact analysis of competition ligand binding by displacement isothermal titration calorimetry. Anal. Biochem. 277 (2000) 260-266
-
(2000)
Anal. Biochem.
, vol.277
, pp. 260-266
-
-
Sigurskjold, B.W.1
-
40
-
-
0034887465
-
Thermal denaturation as a tool to study DNA-ligand interactions
-
Spink C.H., and Wellman S.E. Thermal denaturation as a tool to study DNA-ligand interactions. Methods Enzymol. 340 (2001) 193-211
-
(2001)
Methods Enzymol.
, vol.340
, pp. 193-211
-
-
Spink, C.H.1
Wellman, S.E.2
-
41
-
-
0345293146
-
On the value of c: Can low affinity systems be studied by isothermal titration calorimetry?
-
Turnbull W.B., and Daranas A.H. On the value of c: Can low affinity systems be studied by isothermal titration calorimetry?. J. Am. Chem. Soc. 125 (2003) 14859-14866
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14859-14866
-
-
Turnbull, W.B.1
Daranas, A.H.2
-
42
-
-
0035876257
-
The binding energetics of first- and second-generation HIV-1 protease inhibitors: Implications for drug design
-
Velazquez-Campoy A., Kiso Y., and Freire E. The binding energetics of first- and second-generation HIV-1 protease inhibitors: Implications for drug design. Arch. Biochem. Biophys. 390 (2001) 169-175
-
(2001)
Arch. Biochem. Biophys.
, vol.390
, pp. 169-175
-
-
Velazquez-Campoy, A.1
Kiso, Y.2
Freire, E.3
-
43
-
-
0034093758
-
HIV-1 protease inhibitors: Enthalpic versus entropic optimization of the binding affinity
-
Velazquez-Campoy A., Todd M.J., and Freire E. HIV-1 protease inhibitors: Enthalpic versus entropic optimization of the binding affinity. Biochemistry 39 (2000) 2201-2207
-
(2000)
Biochemistry
, vol.39
, pp. 2201-2207
-
-
Velazquez-Campoy, A.1
Todd, M.J.2
Freire, E.3
-
46
-
-
0024356301
-
Rapid measurement of binding constants and heats of binding using a new titration calorimeter
-
Wiseman T., Williston S., Brandts J.F., and Lin L.N. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179 (1989) 131-137
-
(1989)
Anal. Biochem.
, vol.179
, pp. 131-137
-
-
Wiseman, T.1
Williston, S.2
Brandts, J.F.3
Lin, L.N.4
-
48
-
-
0032144872
-
Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: A thermodynamic study of ligand binding to protein tyrosine phosphatase 1B
-
Zhang YL., and Zhang Z.Y. Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: A thermodynamic study of ligand binding to protein tyrosine phosphatase 1B. Anal. Biochem. 261 (1998) 139-148
-
(1998)
Anal. Biochem.
, vol.261
, pp. 139-148
-
-
Zhang, YL.1
Zhang, Z.Y.2
|